Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009085.1

Orthogroup ID

OG0004306

Physical Location & Seq

Genomic Coordinates Reverse (-)

28324 .. 38236

Gene Structure 9913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009085.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3666 bp

atggcgtgtgcaactccgggagcaaaccctaaaagctcatcgaaaagctcgtaccgcatcggaggcatcgatgtggagttcccgtaccagccgtacgcggcgcagatggcgttcatgagcagagtcgtctccactctcgatcgagctgtcagggacgaccactgccacgccttgctcgagtctcccaccggaaccggcaaatccctctctcttctctgctccatcctcgcctggcagcagagcttcaaggccaagaatatgtacgccaatctctcccattccaagcccaaccccaaggccatgaccgatcccatcgcccacggcggcggctttgttcccgaagaggagcactccagtgagtccgattttgcatttgagtggtcaagttttgatcttggtgctcagccatcggaaaagccagggccgtctcaatctgaaaatcggaagaaaaaggcagctcctaccatatactatgcatcacttccaataattatggttgctgtctttcttgtttacatgtcccaggcctctaggaagcattactgcacaaatgcacaagtacatgggagagagaatattgacgaagaatgtaagcttcttttgaaggatcgagtggttggatgcgtagaatttaaaaacgtacacaaagtcaaaggacatccatctcttcagaaaggaggctgccatgaggcctacgatattgaggatctcgtgaaagttggaaaagttgtcaaaggttgttcatattatgccgctcgttctatgtcagacgatgcagaactggttttttgtccatataactacatcattaatccagtcattaggggagccatggaagtagatattcaggggtccattgtagttctggatgaagcccacaatatagaggatgttgctcgcgatgctggtagtgtagatattgatgaagaagttttgaacaaattgcagatggaactagagcagctttgcccactggatgttttggtttaccaacctctgtatgaaatgatacaggacctcttaagttggattgagcgaaggaaagataagttagaaaagcgtgaatttcagcactttgtgtcttgttggactggtgacaaggctttgagagagcttcaggaagctaatatatcacagcagtgcttcccagtcttacttgaatgtgccacaaaggcaatcaaagctgctacagataaagaatcagaggtagcccatttaagtggcatggctgttgtgacattggaaggattgttctcttcgcttacttacttcttctcaagaaatgggtctcatatggtcgattatcagcttgctttacagagatatgttaaaagagatgttggaacttttggcgattggacacatacattcagtttgtggtgcttgaatcctgctgttgtgtttcaagatattgccaatctttccttgtcagtcattttaacatcggggactttgtcaccaatgaattccttttcatctgagcttggccttcagtttggaagtactctggaagctccccatgtaattgatgttgaatcacaggtttggcccgctattatttctactggcccaggtaatgtgccattgaatgcaagttataagacagcagatgaatatgccttccaggatgcacttggaaaatccttagaggaaattttcaaaagtgtgccgggtgggtgtcttgtcttcttcccaagttacaagctaatggggaagttatgcaagcgttggcgtgaaacaggacaatggtctctgctaaacgaaagaaagtccctttttattgagcccggtggagaccaggaggaatttgagtttgtactgaagggttattatgattcaattcgtgggggcaataagcctgcttttgggagaaataaaggtgctaacaagaaattaagacaaagtagcttcactgcagtcaagtgtgcacaaaagaataacactgatggagctgctttactggctgtgtgccgaggaaaggtttcagaaggaatcgacttcacagatgacaatgctcgggctgtggtaggaagaaatacagcatatgtgtcaaagtggctaaagaaatccattagacagtatgaaagctttgacacgtcaatagaggaattaaaatcctttttcaacaatgtcaaggaaagggtaagcaagaatatggtcaatgtgtcacagagttctgacactagagagaaaatcattctttctatggatcacagtaaagggtttacaagactgaaagatcagaatttgaataaatctgatcctcagggacagacaaaaacttatgtaggcaagcacgattctctactgacatctcaagatgatcttgatgtatcatcacgaatggatgtatatgctgacaatagcaaggactttatcaatatcagatctactcctcagaaagatacaaggtaccttaagccatctttgtccatgtcattctctgatgcagatccagacatctcagttgtcaatgaaaccccttgtatggacggcatcttttccacgtgcagtccaggatcaattactaaggatgagaagtgctgttcgacttcgactacaattgagtcctcttctttctttttggaccaattctcattccaatcaacatccttaaccaattgtagcaaggcttctccaaagggccagtgttctgtagccgctactcctgaaaagaatgcaactttgaactcttacagctcaatgacagaaacagaatcatctttggatttgagtgttaattctcatatccagaaaaggagaaagtccatatatcaatccttggttaactccagtcagggacagtctggtggtgctcctgattctgaaactcctgattgtcctgattccgtaaaagagacgatgaccagtggagatgccattcgcaaaattgaatttagtgaatctaattattcagagcactattgtaagtccatagttcatcatcttcccccgagtacctgtggcacgtcatctgtgtcagttggttctgtcatggacaagagactagaaatctgttgctcactctgcaaaagcccattgggccttcctgagaataatctacatgttacatgctcgataacttcatcatcgaaactttacttggaatctcttcataacgaaatattgaaatctcaaactgggaatacatcagcaggcatacgtgttctcataactgacatttcatcagttgattatcgagtctgccatgaaatttctgaaggcactcctggacagggtgtatggtgtgaaaaagatgggtttgttttcggtaccatcttgtgccccttttgccgtcaccacaagagtagccacgataattttcttggcgtacaggtcatggcaactaatgcatcaaatgttcatttactcaacaagatcatgttttacttagatcagttggaaattacaaattttgaggcatcttctgacagggctacaaaagacaaagatttcttgcctgttaacggttccaacgtcgacaaagttgccattctcaatcccttcgataaattctcgtactctccagtacagcaggaccaaggaggatggaggactacaaaatcaaagcagattatcaaggagaggactatatcttttattggtggcacatatccgcttttggaagatgtcagcatatgtggtcctgcagctgaaacttattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003678 GO:0003824 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

DEAD_2 Helicase_C_2

Protein Analysis

1221

Amino Acids

135.08

Weight (kDa)

5.87

Isoelectric Point (pI)

46.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20720 AT1G20720 AT1G20750
fragaria_vesca	FvH4_5g25570 FvH4_5g25570 FvH4_5g25570 FvH4_5g25570 FvH4_5g25570 FvH4_5g25570 FvH4_5g25570 FvH4_5g25570 FvH4_5g25570 FvH4_5g25570 FvH4_5g25570 FvH4_5g25570 FvH4_5g25570 FvH4_5g25570 FvH4_5g25570
malus_domestica	MD16G1283500.v1.1
prunus_persica	Prupe.5G009400_v2.0.a1 Prupe.5G009400_v2.0.a1 Prupe.5G009400_v2.0.a1
pyrus_communis	pycom16g26050
rosa_chinensis	RchiOBHm_Chr7g0215861
rosa_multiflora	Rmu_co7960896.1_g000001 Rmu_sc0004689.1_g000011 Rmu_sc0009085.1_g000007
rosa_roxburghii	Rroxscaffold_3G00243840
rosa_samantha	Rh7AG294400 Rh7CG314400 Rh7DG297200
rosa_wichuraiana	Rw7G024990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1599
Acc65I	GGTACC	2 cut(s)	2412, 3272
AccB1I	GGYRCC	2 cut(s)	2412, 3272
AccBSI	CCGCTC	1 cut(s)	755
AccI	GTMKAC	1 cut(s)	3480
AccII	CGCG	2 cut(s)	98, 900
AciI	CCGC	8 cut(s)	55, 98, 324, 327, 753, 1551, 2661, 3617
AclWI	GGATC	7 cut(s)	302, 615, 714, 2217, 2255, 2447, 2527
AcuI	CTGAAG	5 cut(s)	653, 1100, 1475, 1841, 3240
AcvI	CACGTG	1 cut(s)	2508
AdeI	CACNNNGTG	1 cut(s)	1078
AfiI	CCNNNNNNNGG	5 cut(s)	1865, 1978, 2488, 3236, 3467
AflII	CTTAAG	2 cut(s)	1021, 2417
AflIII	ACRYGT	4 cut(s)	516, 2094, 3064, 3163
AjiI	CACGTC	2 cut(s)	2097, 2970
AjnI	CCWGG	8 cut(s)	230, 418, 522, 1570, 1623, 1797, 2515, 3229
AjuI	GAANNNNNNNTTGG	2 cut(s)	3086, 3118
AleI	CACNNNNGTG	2 cut(s)	354, 1138
AloI	GAACNNNNNNTCC	2 cut(s)	1235, 1267
Alw21I	GWGCWC	5 cut(s)	351, 403, 1930, 2818, 2922
Alw26I	GTCTC	8 cut(s)	133, 186, 432, 1293, 1755, 1788, 2852, 2998
Alw44I	GTGCAC	1 cut(s)	1926
AlwI	GGATC	7 cut(s)	302, 615, 714, 2217, 2255, 2447, 2527
Ama87I	CYCGRG	3 cut(s)	176, 2016, 2953
ApaLI	GTGCAC	1 cut(s)	1926
ApeKI	GCWGC	7 cut(s)	235, 455, 681, 961, 1184, 1952, 3650
AseI	ATTAAT	1 cut(s)	810
Asp700I	GAANNNNTTC	2 cut(s)	1981, 3111
Asp718I	GGTACC	2 cut(s)	2412, 3272
AspLEI	GCGC	1 cut(s)	103
AsuC2I	CCSGG	3 cut(s)	18, 1671, 1788
AsuHPI	GGTGA	3 cut(s)	1106, 1449, 3290
AvaI	CYCGRG	3 cut(s)	176, 2016, 2953
AvaII	GGWCC	5 cut(s)	852, 1015, 2587, 3538, 3644
AxyI	CCTNAGG	1 cut(s)	2265
BaeGI	GKGCMC	2 cut(s)	1930, 3287
BanI	GGYRCC	2 cut(s)	2412, 3272
BanII	GRGCYC	1 cut(s)	1788
BarI	GAAGNNNNNNTAC	2 cut(s)	2617, 2649
BauI	CACGAG	1 cut(s)	710
BbrPI	CACGTG	1 cut(s)	2508
BbsI	GAAGAC	1 cut(s)	1678
Bbv12I	GWGCWC	5 cut(s)	351, 403, 1930, 2818, 2922
BbvI	GCAGC	7 cut(s)	247, 467, 668, 973, 1171, 1939, 3662
BceAI	ACGGC	5 cut(s)	76, 337, 409, 2509, 3279
BcgI	CGANNNNNNTGC	2 cut(s)	3470, 3504
BciT130I	CCWGG	8 cut(s)	232, 420, 524, 1572, 1625, 1799, 2517, 3231
BcnI	CCSGG	3 cut(s)	18, 1671, 1788
BcoDI	GTCTC	8 cut(s)	133, 186, 432, 1293, 1755, 1788, 2852, 2998
BfaI	CTAG	4 cut(s)	531, 956, 2184, 3008
BfmI	CTRYAG	4 cut(s)	1188, 1914, 2655, 3648
BfrI	CTTAAG	2 cut(s)	1021, 2417
BglI	GCCNNNNNGGC	2 cut(s)	1172, 3042
BglII	AGATCT	1 cut(s)	2387
BlpI	GCTNAGC	1 cut(s)	402
BmcAI	AGTACT	1 cut(s)	1504
Bme18I	GGWCC	5 cut(s)	852, 1015, 2587, 3538, 3644
BmeT110I	CYCGRG	3 cut(s)	176, 2016, 2953
BmgBI	CACGTC	2 cut(s)	2097, 2970
BmiI	GGNNCC	6 cut(s)	193, 829, 853, 2414, 3274, 3472
BmrI	ACTGGG	2 cut(s)	1142, 3150
BmuI	ACTGGG	2 cut(s)	1142, 3150
BoxI	GACNNNNGTC	1 cut(s)	1747
BpiI	GAAGAC	1 cut(s)	1678
BplI	GAGNNNNNCTC	2 cut(s)	335, 367
BpmI	CTGGAG	3 cut(s)	337, 2776, 3510
Bpu1102I	GCTNAGC	1 cut(s)	402
BpuEI	CTTGAG	2 cut(s)	1261, 2301
BpuMI	CCSGG	3 cut(s)	18, 1671, 1788
Bsa29I	ATCGAT	1 cut(s)	69
BsaAI	YACGTR	2 cut(s)	2508, 3164
BsaBI	GATNNNNATC	1 cut(s)	2451
BsaI	GGTCTC	3 cut(s)	1293, 1755, 1788
BsaJI	CCNNGG	9 cut(s)	294, 319, 419, 522, 831, 1570, 1972, 2781, 3541
BsaWI	WCCGGW	1 cut(s)	188
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	5 cut(s)	1865, 1978, 2488, 3236, 3467
Bse118I	RCCGGY	1 cut(s)	194
Bse21I	CCTNAGG	1 cut(s)	2265
Bse8I	GATNNNNATC	1 cut(s)	2451
BseBI	CCWGG	8 cut(s)	232, 420, 524, 1572, 1625, 1799, 2517, 3231
BseCI	ATCGAT	1 cut(s)	69
BseDI	CCNNGG	9 cut(s)	294, 319, 419, 522, 831, 1570, 1972, 2781, 3541
BseJI	GATNNNNATC	1 cut(s)	2451
BseLI	CCNNNNNNNGG	5 cut(s)	1865, 1978, 2488, 3236, 3467
BseMII	CTCAG	6 cut(s)	416, 1470, 2279, 2411, 2478, 3042
BseRI	GAGGAG	2 cut(s)	359, 2385
BseSI	GKGCMC	2 cut(s)	1930, 3287
BseXI	GCAGC	7 cut(s)	247, 467, 668, 973, 1171, 1939, 3662
BsgI	GTGCAG	2 cut(s)	529, 2530
Bsh1236I	CGCG	2 cut(s)	98, 900
Bsh1285I	CGRYCG	1 cut(s)	142
BshNI	GGYRCC	2 cut(s)	2412, 3272
BshVI	ATCGAT	1 cut(s)	69
BsiEI	CGRYCG	1 cut(s)	142
BsiHKAI	GWGCWC	5 cut(s)	351, 403, 1930, 2818, 2922
BsiHKCI	CYCGRG	3 cut(s)	176, 2016, 2953
BsiSI	CCGG	5 cut(s)	17, 189, 195, 1670, 1788
BsiWI	CGTACG	1 cut(s)	93
BslFI	GGGAC	6 cut(s)	167, 505, 1462, 1756, 2283, 2814
BslI	CCNNNNNNNGG	5 cut(s)	1865, 1978, 2488, 3236, 3467
BsmAI	GTCTC	8 cut(s)	133, 186, 432, 1293, 1755, 1788, 2852, 2998
BsmBI	CGTCTC	3 cut(s)	133, 432, 2852
BsmFI	GGGAC	6 cut(s)	167, 505, 1462, 1756, 2283, 2814
BsmI	GAATGC	2 cut(s)	1594, 2683
Bso31I	GGTCTC	3 cut(s)	1293, 1755, 1788
BsoBI	CYCGRG	3 cut(s)	176, 2016, 2953
Bsp1286I	GDGCHC	7 cut(s)	351, 403, 1788, 1930, 2818, 2922, 3287
Bsp1720I	GCTNAGC	1 cut(s)	402
Bsp19I	CCATGG	1 cut(s)	831
Bsp68I	TCGCGA	1 cut(s)	900
BspACI	CCGC	8 cut(s)	55, 98, 324, 327, 753, 1551, 2661, 3617
BspCNI	CTCAG	6 cut(s)	415, 1471, 2278, 2410, 2477, 3043
BspDI	ATCGAT	1 cut(s)	69
BspFNI	CGCG	2 cut(s)	98, 900
BspHI	TCATGA	1 cut(s)	114
BspLI	GGNNCC	6 cut(s)	193, 829, 853, 2414, 3274, 3472
BspMAI	CTGCAG	2 cut(s)	1918, 3652
BspPI	GGATC	7 cut(s)	302, 615, 714, 2217, 2255, 2447, 2527
BspT107I	GGYRCC	2 cut(s)	2412, 3272
BspTI	CTTAAG	2 cut(s)	1021, 2417
BspTNI	GGTCTC	3 cut(s)	1293, 1755, 1788
BsrBI	CCGCTC	1 cut(s)	755
BsrFI	RCCGGY	1 cut(s)	194
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	9 cut(s)	294, 319, 419, 522, 831, 1570, 1972, 2781, 3541
BssSI	CACGAG	1 cut(s)	710
BssT1I	CCWWGG	4 cut(s)	294, 831, 2781, 3541
Bst2BI	CACGAG	1 cut(s)	710
Bst2UI	CCWGG	8 cut(s)	232, 420, 524, 1572, 1625, 1799, 2517, 3231
Bst4CI	ACNGT	4 cut(s)	2079, 2216, 2805, 3470
Bst6I	CTCTTC	6 cut(s)	216, 336, 672, 1261, 2578, 3117
BstAFI	CTTAAG	2 cut(s)	1021, 2417
BstAPI	GCANNNNNTGC	1 cut(s)	3350
BstBAI	YACGTR	2 cut(s)	2508, 3164
BstC8I	GCNNGC	7 cut(s)	898, 1311, 1551, 1724, 1860, 2294, 3157
BstDEI	CTNAG	9 cut(s)	402, 1479, 1645, 2265, 2397, 2464, 2529, 3051, 3391
BstDSI	CCRYGG	2 cut(s)	319, 831
BstFNI	CGCG	2 cut(s)	98, 900
BstHHI	GCGC	1 cut(s)	103
BstMAI	GTCTC	8 cut(s)	133, 186, 432, 1293, 1755, 1788, 2852, 2998
BstMCI	CGRYCG	1 cut(s)	142
BstNI	CCWGG	8 cut(s)	232, 420, 524, 1572, 1625, 1799, 2517, 3231
BstNSI	RCATGY	3 cut(s)	520, 3068, 3075
BstPAI	GACNNNNGTC	1 cut(s)	1747
BstSFI	CTRYAG	4 cut(s)	1188, 1914, 2655, 3648
BstSLI	GKGCMC	2 cut(s)	1930, 3287
BstUI	CGCG	2 cut(s)	98, 900
BstV1I	GCAGC	7 cut(s)	247, 467, 668, 973, 1171, 1939, 3662
BstV2I	GAAGAC	1 cut(s)	1678
BstX2I	RGATCY	3 cut(s)	706, 2387, 2452
BstXI	CCANNNNNNTGG	1 cut(s)	1220
BstYI	RGATCY	3 cut(s)	706, 2387, 2452
Bsu15I	ATCGAT	1 cut(s)	69
Bsu36I	CCTNAGG	1 cut(s)	2265
BsuTUI	ATCGAT	1 cut(s)	69
BtgI	CCRYGG	2 cut(s)	319, 831
BtgZI	GCGATG	2 cut(s)	298, 915
BtrI	CACGTC	2 cut(s)	2097, 2970
BtsI	GCAGTG	3 cut(s)	160, 1145, 1911
BtsIMutI	CAGTG	8 cut(s)	160, 361, 971, 1145, 1911, 1941, 2654, 2875
BtuMI	TCGCGA	1 cut(s)	900
Cac8I	GCNNGC	7 cut(s)	898, 1311, 1551, 1724, 1860, 2294, 3157
CciI	TCATGA	1 cut(s)	114
CfoI	GCGC	1 cut(s)	103
Cfr10I	RCCGGY	1 cut(s)	194
ClaI	ATCGAT	1 cut(s)	69
DdeI	CTNAG	9 cut(s)	402, 1479, 1645, 2265, 2397, 2464, 2529, 3051, 3391
DraI	TTTAAA	1 cut(s)	634
DraIII	CACNNNGTG	1 cut(s)	1078
Eam1104I	CTCTTC	6 cut(s)	216, 336, 672, 1261, 2578, 3117
EarI	CTCTTC	6 cut(s)	216, 336, 672, 1261, 2578, 3117
Eco130I	CCWWGG	4 cut(s)	294, 831, 2781, 3541
Eco147I	AGGCCT	2 cut(s)	527, 692
Eco24I	GRGCYC	1 cut(s)	1788
Eco31I	GGTCTC	3 cut(s)	1293, 1755, 1788
Eco47I	GGWCC	5 cut(s)	852, 1015, 2587, 3538, 3644
Eco57I	CTGAAG	5 cut(s)	653, 1100, 1475, 1841, 3240
Eco72I	CACGTG	1 cut(s)	2508
Eco81I	CCTNAGG	1 cut(s)	2265
Eco88I	CYCGRG	3 cut(s)	176, 2016, 2953
EcoO109I	RGGNCCY	1 cut(s)	1015
EcoRI	GAATTC	1 cut(s)	1465
EcoRII	CCWGG	8 cut(s)	230, 418, 522, 1570, 1623, 1797, 2515, 3229
EcoT14I	CCWWGG	4 cut(s)	294, 831, 2781, 3541
EcoT22I	ATGCAT	2 cut(s)	478, 3355
EcoT38I	GRGCYC	1 cut(s)	1788
ErhI	CCWWGG	4 cut(s)	294, 831, 2781, 3541
Esp3I	CGTCTC	3 cut(s)	133, 432, 2852
FalI	AAGNNNNNCTT	2 cut(s)	2310, 2342
FaqI	GGGAC	6 cut(s)	167, 505, 1462, 1756, 2283, 2814
FauI	CCCGC	1 cut(s)	1558
FauNDI	CATATG	3 cut(s)	1293, 2044, 3638
FblI	GTMKAC	1 cut(s)	3480
FriOI	GRGCYC	1 cut(s)	1788
FspBI	CTAG	4 cut(s)	531, 956, 2184, 3008
GlaI	GCGC	1 cut(s)	102
GsuI	CTGGAG	3 cut(s)	337, 2776, 3510
HapII	CCGG	5 cut(s)	17, 189, 195, 1670, 1788
HhaI	GCGC	1 cut(s)	103
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HincII	GTYRAC	3 cut(s)	2788, 3466, 3481
HindII	GTYRAC	3 cut(s)	2788, 3466, 3481
HindIII	AAGCTT	2 cut(s)	593, 2086
HpaI	GTTAAC	2 cut(s)	2788, 3466
HpaII	CCGG	5 cut(s)	17, 189, 195, 1670, 1788
HphI	GGTGA	3 cut(s)	1106, 1449, 3290
Hpy166II	GTNNAC	8 cut(s)	514, 643, 988, 1928, 2226, 2788, 3466, 3481
Hpy8I	GTNNAC	8 cut(s)	514, 643, 988, 1928, 2226, 2788, 3466, 3481
Hpy99I	CGWCG	1 cut(s)	3482
HpyCH4III	ACNGT	4 cut(s)	2079, 2216, 2805, 3470
HpyCH4IV	ACGT	6 cut(s)	639, 2096, 2507, 2969, 3163, 3477
HpyF3I	CTNAG	9 cut(s)	402, 1479, 1645, 2265, 2397, 2464, 2529, 3051, 3391
HpySE526I	ACGT	6 cut(s)	639, 2096, 2507, 2969, 3163, 3477
HspAI	GCGC	1 cut(s)	101
KpnI	GGTACC	2 cut(s)	2416, 3276
KspAI	GTTAAC	2 cut(s)	2788, 3466
LmnI	GCTCC	8 cut(s)	20, 224, 346, 463, 827, 1519, 1949, 2821
Lsp1109I	GCAGC	7 cut(s)	247, 467, 668, 973, 1171, 1939, 3662
MaeI	CTAG	4 cut(s)	531, 956, 2184, 3008
MaeII	ACGT	6 cut(s)	639, 2096, 2507, 2969, 3163, 3477
MaeIII	GTNAC	7 cut(s)	1094, 1234, 1455, 1697, 2166, 3067, 3296
MbiI	CCGCTC	1 cut(s)	755
MfeI	CAATTG	2 cut(s)	2562, 2620
MflI	RGATCY	3 cut(s)	706, 2387, 2452
MhlI	GDGCHC	7 cut(s)	351, 403, 1788, 1930, 2818, 2922, 3287
MlyI	GAGTC	5 cut(s)	132, 188, 368, 2576, 3210
MmeI	TCCRAC	7 cut(s)	598, 700, 1007, 1067, 1321, 3381, 3498
Mph1103I	ATGCAT	2 cut(s)	478, 3355
MroXI	GAANNNNTTC	2 cut(s)	1981, 3111
MslI	CAYNNNNRTG	5 cut(s)	71, 354, 376, 1138, 1218
MspA1I	CMGCKG	1 cut(s)	3653
MspCI	CTTAAG	2 cut(s)	1021, 2417
MspI	CCGG	5 cut(s)	17, 189, 195, 1670, 1788
MunI	CAATTG	2 cut(s)	2562, 2620
Mva1269I	GAATGC	2 cut(s)	1594, 2683
MvaI	CCWGG	8 cut(s)	232, 420, 524, 1572, 1625, 1799, 2517, 3231
MvnI	CGCG	2 cut(s)	98, 900
NciI	CCSGG	3 cut(s)	18, 1671, 1788
NcoI	CCATGG	1 cut(s)	831
NdeI	CATATG	3 cut(s)	1293, 2044, 3638
NlaIV	GGNNCC	6 cut(s)	193, 829, 853, 2414, 3274, 3472
NmeAIII	GCCGAG	1 cut(s)	1997
NmuCI	GTSAC	5 cut(s)	1094, 1234, 1455, 2166, 3296
NruI	TCGCGA	1 cut(s)	900
NsiI	ATGCAT	2 cut(s)	478, 3355
NspI	RCATGY	3 cut(s)	520, 3068, 3075
OliI	CACNNNNGTG	2 cut(s)	354, 1138
PaeR7I	CTCGAG	1 cut(s)	176
PagI	TCATGA	1 cut(s)	114
PceI	AGGCCT	2 cut(s)	527, 692
PciI	ACATGT	2 cut(s)	516, 3064
PcsI	WCGNNNNNNNCGW	4 cut(s)	47, 66, 174, 3474
PctI	GAATGC	2 cut(s)	1594, 2683
PdmI	GAANNNNTTC	2 cut(s)	1981, 3111
Pfl23II	CGTACG	1 cut(s)	93
PflFI	GACNNNGTC	1 cut(s)	1453
PfoI	TCCNGGA	4 cut(s)	16, 1623, 2515, 3229
Ple19I	CGATCG	1 cut(s)	142
PleI	GAGTC	5 cut(s)	131, 187, 367, 2575, 3209
PmaCI	CACGTG	1 cut(s)	2508
PmlI	CACGTG	1 cut(s)	2508
PpsI	GAGTC	5 cut(s)	131, 187, 367, 2575, 3209
Ppu21I	YACGTR	2 cut(s)	2508, 3164
PpuMI	RGGWCCY	1 cut(s)	1015
PscI	ACATGT	2 cut(s)	516, 3064
PshAI	GACNNNNGTC	1 cut(s)	1747
PshBI	ATTAAT	1 cut(s)	810
PsiI	TTATAA	1 cut(s)	1599
Psp5II	RGGWCCY	1 cut(s)	1015
Psp6I	CCWGG	8 cut(s)	230, 418, 522, 1570, 1623, 1797, 2515, 3229
PspCI	CACGTG	1 cut(s)	2508
PspGI	CCWGG	8 cut(s)	230, 418, 522, 1570, 1623, 1797, 2515, 3229
PspLI	CGTACG	1 cut(s)	93
PspN4I	GGNNCC	6 cut(s)	193, 829, 853, 2414, 3274, 3472
PspPPI	RGGWCCY	1 cut(s)	1015
PspXI	VCTCGAGB	1 cut(s)	176
PstI	CTGCAG	2 cut(s)	1918, 3652
PsuI	RGATCY	3 cut(s)	706, 2387, 2452
PsyI	GACNNNGTC	1 cut(s)	1453
PvuI	CGATCG	1 cut(s)	142
PvuII	CAGCTG	1 cut(s)	3653
RruI	TCGCGA	1 cut(s)	900
RseI	CAYNNNNRTG	5 cut(s)	71, 354, 376, 1138, 1218
SalI	GTCGAC	1 cut(s)	3479
ScaI	AGTACT	1 cut(s)	1504
SchI	GAGTC	5 cut(s)	132, 188, 368, 2576, 3210
SduI	GDGCHC	7 cut(s)	351, 403, 1788, 1930, 2818, 2922, 3287
SfcI	CTRYAG	4 cut(s)	1188, 1914, 2655, 3648
Sfr274I	CTCGAG	1 cut(s)	176
SinI	GGWCC	5 cut(s)	852, 1015, 2587, 3538, 3644
SlaI	CTCGAG	1 cut(s)	176
SmiMI	CAYNNNNRTG	5 cut(s)	71, 354, 376, 1138, 1218
SmlI	CTYRAG	5 cut(s)	176, 1021, 1276, 2316, 2417
SmoI	CTYRAG	5 cut(s)	176, 1021, 1276, 2316, 2417
SseBI	AGGCCT	2 cut(s)	527, 692
SsiI	CCGC	8 cut(s)	55, 98, 324, 327, 753, 1551, 2661, 3617
SspI	AATATT	2 cut(s)	577, 3126
SspMI	CTAG	4 cut(s)	531, 956, 2184, 3008
StuI	AGGCCT	2 cut(s)	527, 692
StyI	CCWWGG	4 cut(s)	294, 831, 2781, 3541
TaaI	ACNGT	4 cut(s)	2079, 2216, 2805, 3470
TaiI	ACGT	6 cut(s)	642, 2099, 2510, 2972, 3166, 3480
TaqII	GACCGA	1 cut(s)	320
TatI	WGTACW	4 cut(s)	559, 1502, 1816, 3529
TauI	GCSGC	5 cut(s)	101, 327, 330, 755, 2663
TscAI	CASTG	8 cut(s)	167, 361, 978, 1145, 1918, 1948, 2654, 2875
TseFI	GTSAC	5 cut(s)	1094, 1234, 1455, 2166, 3296
TseI	GCWGC	7 cut(s)	235, 455, 681, 961, 1184, 1952, 3650
Tsp45I	GTSAC	5 cut(s)	1094, 1234, 1455, 2166, 3296
TspGWI	ACGGA	1 cut(s)	2839
TspRI	CASTG	8 cut(s)	167, 361, 978, 1145, 1918, 1948, 2654, 2875
Tth111I	GACNNNGTC	1 cut(s)	1453
Vha464I	CTTAAG	2 cut(s)	1021, 2417
VneI	GTGCAC	1 cut(s)	1926
VpaK11BI	GGWCC	5 cut(s)	852, 1015, 2587, 3538, 3644
VspI	ATTAAT	1 cut(s)	810
XceI	RCATGY	3 cut(s)	520, 3068, 3075
XcmI	CCANNNNNNNNNTGG	2 cut(s)	862, 1631
XhoI	CTCGAG	1 cut(s)	176
XmiI	GTMKAC	1 cut(s)	3480
XmnI	GAANNNNTTC	2 cut(s)	1981, 3111
XspI	CTAG	4 cut(s)	531, 956, 2184, 3008
ZrmI	AGTACT	1 cut(s)	1504
Zsp2I	ATGCAT	2 cut(s)	478, 3355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.