Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004689.1

Orthogroup ID

OG0004306

Physical Location & Seq

Genomic Coordinates Reverse (-)

53874 .. 67096

Gene Structure 13223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004689.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3684 bp

atggcgtgtgcaactccgggagcaaaccctaaaagctcatcgaaaagctcgtaccgcatcggaggcatcgatgtggagttcccgtaccagccgtacgcggcgcagatggcgttcatgagcagagtcgtctccactctcgatcgagctgtcagggacgaccactgccacgccttgctcgagtctcccaccggaaccggcaaatccctctctcttctctgctccatcctcgcctggcagcagagcttcaaggccaagaatatgtacgccaatctctcccattccaagcccaaccccaaggccatgaccgatcccatcgcccacggcggcggctttgttcccgaagaggagcactccagtgagtccgattttgcatttgagtggtcaagttttgatcttggtgctcagccatcggaaaagccagggccgtctcaatctgaaaataggaagaaaaaggcagctcctaccatatactatgcatcaaacgtacacaaagtcaaaggacatccatctcttcagacaggaggctgccacgaggcctacgatattgaggatctcgtgaaagttggaaaagttgtcaaaggttgttcatattatgccgctcgttctatgtcagacgatgcagaactggttttttgtccatataactacatcattaatccagtcattaggggagccatggaagtagatattcaggggtccattgtagttctggatgaagcccacaatatagaggatgttgctcgtgatgctggtagtgtagatattgatgaagaagttttgaacaaattgcagatggaactagagcagctttgcccactggatgttttggtttaccaacctctgtatgaaatgatacaggacctcttaagttggattgagcgaaggaaagataagttagaaaagcgtgaatttcagcactttgtgtcttgttggactggtgacaaggctttgagagagcttcaggaagctaatatatcacagcagtgcttcccagtcttacttgaatgtgccacaaaggcaatcaaagctgctacagataaagaatcagaggtagcccatttaagtggcatggctgttgtgacattggaaggattgttctcttcgcttacttacttcttctcaagaaatgggtctcatatggtcgattatcagcttgctttacagagatatgttaaaagagatgttggaacttttggcgattggacacatacattcagtttgtggtgcttgaatcctgctgttgtgtttcaagatattgccaatctttccttgtcagtcattttaacatcggggactttgtcaccaatgaattccttttcatctgagcttggccttcagtttggaagtactctggaagctccccatgtaattgatgttgaatcacaggtttggcccgctattatttctactggcccaggtaatgtgccattgaatgcaagttataagacagcagatgaatatgccttccaggatgcacttggaaaatccttagaggaaattttcaaaagtgtgccgggtgggtgtcttgtcttcttcccaagttacaagctaatggggaagttatgcaagcgttggcgtgaaacaggacaatggtctctgctaaacgaaagaaagtccctttttattgagcccggtggagaccaggaggaatttgagtttgtactgaagggttattatgattcaattcgtgggggcaataagcctgcttttgggagaaataaaggtgctaacaagaaattaagacaaagtagcttcactgcagtcaagtgtgcacaaaagaataacactgatggagctgctttactggctgtgtgccgaggaaaggtttcagaaggaatcgacttcacagatgacaatgctcgggctgtggaggtttcagaaggaatcgacttcacagatgacaatgctcgggctgtggtaggaagaaatacagcatatgtgtcaaagtggctaaagaaatccattagacagtatgaaagctttgacacgtcaatagaggaattaaaatcctttttcaacaatgtcaaggaaagggtaagcaagaatatggtcaatgtgtcacagagttctgacactagagagaaaatcattctttctatggatcacagtaaagggtttacaagactgaaagatcagaatttgaataaatctgatcctcagggacagacaaaaacttatgtaggcaagcacgattctctactgacatctcaagatgatcttgatgtatcatcacgaatggatgtatatgctgacaatagcaaggactttatcaatatcagatctactcctcagaaagatacaaggtaccttaagccatctttgtccatgtcattctctgatgcagatccagacatctcagttgtcaatgaaaccccttgtatggacggcatcttttccacgtgcagtccaggatcaattactaaggatgagaagtgctgttcgacttcgactacaattgagtcctcttctttctttttggaccaattctcattccaatcaacatccttaaccaattgtagcaaggcttctccaaagggccagtgttctgtagctgctactcctgaaaagaatgcaactttgaactcttacagctcaatgacagaaacagaatcatctttggatttgagtgttaattctcatatccagaaaaggagaaagtccatatatcaatccttggttaactccagtcagggacagtctggtggtgctcctgattctgaaactcctgattgtcctgattccgtaaaagagacgatgaccagtggagatgccattcgcaaaattgaatttagtgaatctaattattcagagcactattgtaagtccatagttcatcatcttcccccgagtacctgtggcacgtcatctgtgtcagttggttctgtcatggacaagagactagaaatctgttgctcactctgcaaaagcccattgggccttcctgagaataatctacatgttacatgctcgataacttcatcatcgaaactttacttggaatctcttcataacgaaatattgaaatctcaaactgggaatacatcagcaggcatacgtgttctcataactgacatttcatcagttgattatcgagtctgccatgaaatttctgaaggcactcctggacagggtgtatggtgtgaaaaagatgggtttgttttcggtaccatcttgtgccccttttgctgtcaccacaagagtagccacgataatttccttggcgtacaggtcatggcaactaatgcatcaaatgttcatttactcaacaagatcatgttttacttagatcagttggaaattacaaattttgaggcatcttctgacagggctacaaaagacaaagtaagattaggagtttgtgttgatagtaggagtggacattttgtacggaaaatgtggttaccgtcccgaaccgcaccgaaaaaacagttcggtaaccgcaccgaactaaaacagttcggtaaccgcaccgaactaaaacagtgtagttttatgatcacacctcaccgaaccgtattaaagcgcttctgctacttccatggcgttccggatgttcttaaccactccgtttttgccttggtaggattcaacggagccgaggcttggagacgacggagcagaactcataatgactcaatttcgactcccgccgctcgcagctcgccgctcgccgccaccggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003678 GO:0003824 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

DEAD_2 Helicase_C_2

Protein Analysis

1227

Amino Acids

135.68

Weight (kDa)

6.23

Isoelectric Point (pI)

47.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20720 AT1G20720 AT1G20750
fragaria_vesca	FvH4_5g25570 FvH4_5g25570 FvH4_5g25570 FvH4_5g25570 FvH4_5g25570 FvH4_5g25570 FvH4_5g25570 FvH4_5g25570 FvH4_5g25570 FvH4_5g25570 FvH4_5g25570 FvH4_5g25570 FvH4_5g25570 FvH4_5g25570 FvH4_5g25570
malus_domestica	MD16G1283500.v1.1
prunus_persica	Prupe.5G009400_v2.0.a1 Prupe.5G009400_v2.0.a1 Prupe.5G009400_v2.0.a1
pyrus_communis	pycom16g26050
rosa_chinensis	RchiOBHm_Chr7g0215861
rosa_multiflora	Rmu_co7960896.1_g000001 Rmu_sc0004689.1_g000011 Rmu_sc0009085.1_g000007
rosa_roxburghii	Rroxscaffold_3G00243840
rosa_samantha	Rh7AG294400 Rh7CG314400 Rh7DG297200
rosa_wichuraiana	Rw7G024990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1443
Acc65I	GGTACC	2 cut(s)	2304, 3164
AccB1I	GGYRCC	2 cut(s)	2304, 3164
AccBSI	CCGCTC	3 cut(s)	599, 3653, 3667
AccII	CGCG	1 cut(s)	98
AccIII	TCCGGA	1 cut(s)	3547
AclWI	GGATC	6 cut(s)	302, 558, 2109, 2147, 2339, 2419
AcsI	RAATTY	8 cut(s)	908, 1309, 1497, 1649, 2137, 2786, 3105, 3304
AcuI	CTGAAG	5 cut(s)	497, 944, 1319, 1685, 3132
AcvI	CACGTG	1 cut(s)	2400
AdeI	CACNNNGTG	1 cut(s)	922
AfeI	AGCGCT	1 cut(s)	3524
AfiI	CCNNNNNNNGG	5 cut(s)	1709, 1822, 2380, 3128, 3603
AflII	CTTAAG	2 cut(s)	865, 2309
AflIII	ACRYGT	3 cut(s)	1986, 2956, 3055
AgeI	ACCGGT	1 cut(s)	3677
AjiI	CACGTC	2 cut(s)	1989, 2862
AjnI	CCWGG	7 cut(s)	230, 418, 1414, 1467, 1641, 2407, 3121
AjuI	GAANNNNNNNTTGG	2 cut(s)	2978, 3010
AleI	CACNNNNGTG	2 cut(s)	354, 982
AloI	GAACNNNNNNTCC	2 cut(s)	1079, 1111
Alw21I	GWGCWC	5 cut(s)	351, 403, 1774, 2710, 2814
Alw26I	GTCTC	9 cut(s)	133, 186, 432, 1137, 1599, 1632, 2744, 2890, 3601
Alw44I	GTGCAC	1 cut(s)	1770
AlwI	GGATC	6 cut(s)	302, 558, 2109, 2147, 2339, 2419
Ama87I	CYCGRG	4 cut(s)	176, 1860, 1908, 2845
Aor13HI	TCCGGA	1 cut(s)	3547
Aor51HI	AGCGCT	1 cut(s)	3524
AoxI	GGCC	9 cut(s)	249, 297, 422, 534, 1330, 1391, 1411, 2536, 2935
ApaLI	GTGCAC	1 cut(s)	1770
ApeKI	GCWGC	8 cut(s)	235, 455, 525, 805, 1028, 1796, 2552, 3657
ApoI	RAATTY	8 cut(s)	908, 1309, 1497, 1649, 2137, 2786, 3105, 3304
AseI	ATTAAT	1 cut(s)	654
AsiGI	ACCGGT	1 cut(s)	3677
Asp700I	GAANNNNTTC	2 cut(s)	1825, 3003
Asp718I	GGTACC	2 cut(s)	2304, 3164
AspLEI	GCGC	2 cut(s)	103, 3525
AspS9I	GGNCC	8 cut(s)	422, 696, 859, 1392, 1412, 2479, 2536, 2935
AsuC2I	CCSGG	3 cut(s)	18, 1515, 1632
AsuHPI	GGTGA	4 cut(s)	950, 1293, 3182, 3497
AvaI	CYCGRG	4 cut(s)	176, 1860, 1908, 2845
AvaII	GGWCC	3 cut(s)	696, 859, 2479
AxyI	CCTNAGG	1 cut(s)	2157
BaeGI	GKGCMC	2 cut(s)	1774, 3179
BanI	GGYRCC	2 cut(s)	2304, 3164
BanII	GRGCYC	1 cut(s)	1632
BarI	GAAGNNNNNNTAC	2 cut(s)	2509, 2541
BauI	CACGAG	3 cut(s)	530, 554, 741
BbrPI	CACGTG	1 cut(s)	2400
BbsI	GAAGAC	1 cut(s)	1522
Bbv12I	GWGCWC	5 cut(s)	351, 403, 1774, 2710, 2814
BbvI	GCAGC	8 cut(s)	247, 467, 512, 817, 1015, 1783, 2539, 3669
BceAI	ACGGC	4 cut(s)	76, 337, 409, 2401
BciT130I	CCWGG	7 cut(s)	232, 420, 1416, 1469, 1643, 2409, 3123
BclI	TGATCA	1 cut(s)	3495
BcnI	CCSGG	3 cut(s)	18, 1515, 1632
BcoDI	GTCTC	9 cut(s)	133, 186, 432, 1137, 1599, 1632, 2744, 2890, 3601
BfaI	CTAG	3 cut(s)	800, 2076, 2900
BfmI	CTRYAG	3 cut(s)	1032, 1758, 2547
BfoI	RGCGCY	1 cut(s)	3526
BfrI	CTTAAG	2 cut(s)	865, 2309
BglI	GCCNNNNNGGC	2 cut(s)	1016, 2934
BglII	AGATCT	1 cut(s)	2279
BlpI	GCTNAGC	1 cut(s)	402
BmcAI	AGTACT	1 cut(s)	1348
Bme18I	GGWCC	3 cut(s)	696, 859, 2479
BmeT110I	CYCGRG	4 cut(s)	176, 1860, 1908, 2845
BmgBI	CACGTC	2 cut(s)	1989, 2862
BmgT120I	GGNCC	8 cut(s)	422, 696, 859, 1392, 1412, 2479, 2536, 2935
BmiI	GGNNCC	6 cut(s)	193, 673, 697, 2306, 3166, 3595
BmrI	ACTGGG	2 cut(s)	986, 3042
BmuI	ACTGGG	2 cut(s)	986, 3042
BoxI	GACNNNNGTC	1 cut(s)	1591
BpiI	GAAGAC	1 cut(s)	1522
BplI	GAGNNNNNCTC	4 cut(s)	335, 367, 3607, 3639
BpmI	CTGGAG	2 cut(s)	337, 2668
Bpu1102I	GCTNAGC	1 cut(s)	402
BpuEI	CTTGAG	2 cut(s)	1105, 2193
BpuMI	CCSGG	3 cut(s)	18, 1515, 1632
Bsa29I	ATCGAT	1 cut(s)	69
BsaAI	YACGTR	2 cut(s)	2400, 3056
BsaBI	GATNNNNATC	1 cut(s)	2343
BsaI	GGTCTC	3 cut(s)	1137, 1599, 1632
BsaWI	WCCGGW	3 cut(s)	188, 3547, 3677
BsaXI	ACNNNNNCTCC	4 cut(s)	68, 98, 3345, 3375
Bsc4I	CCNNNNNNNGG	5 cut(s)	1709, 1822, 2380, 3128, 3603
Bse118I	RCCGGY	2 cut(s)	194, 3677
Bse21I	CCTNAGG	1 cut(s)	2157
Bse8I	GATNNNNATC	1 cut(s)	2343
BseAI	TCCGGA	1 cut(s)	3547
BseBI	CCWGG	7 cut(s)	232, 420, 1416, 1469, 1643, 2409, 3123
BseCI	ATCGAT	1 cut(s)	69
BseJI	GATNNNNATC	1 cut(s)	2343
BseLI	CCNNNNNNNGG	5 cut(s)	1709, 1822, 2380, 3128, 3603
BseMII	CTCAG	6 cut(s)	416, 1314, 2171, 2303, 2370, 2934
BseRI	GAGGAG	2 cut(s)	359, 2277
BseSI	GKGCMC	2 cut(s)	1774, 3179
BseXI	GCAGC	8 cut(s)	247, 467, 512, 817, 1015, 1783, 2539, 3669
BsgI	GTGCAG	1 cut(s)	2422
Bsh1236I	CGCG	1 cut(s)	98
Bsh1285I	CGRYCG	1 cut(s)	142
BshFI	GGCC	9 cut(s)	251, 299, 424, 536, 1332, 1393, 1413, 2538, 2937
BshNI	GGYRCC	2 cut(s)	2304, 3164
BshTI	ACCGGT	1 cut(s)	3677
BshVI	ATCGAT	1 cut(s)	69
BsiEI	CGRYCG	1 cut(s)	142
BsiHKAI	GWGCWC	5 cut(s)	351, 403, 1774, 2710, 2814
BsiHKCI	CYCGRG	4 cut(s)	176, 1860, 1908, 2845
BsiSI	CCGG	7 cut(s)	17, 189, 195, 1514, 1632, 3548, 3678
BsiWI	CGTACG	1 cut(s)	93
BslFI	GGGAC	6 cut(s)	167, 1306, 1600, 2175, 2706, 3391
BslI	CCNNNNNNNGG	5 cut(s)	1709, 1822, 2380, 3128, 3603
BsmAI	GTCTC	9 cut(s)	133, 186, 432, 1137, 1599, 1632, 2744, 2890, 3601
BsmBI	CGTCTC	4 cut(s)	133, 432, 2744, 3601
BsmFI	GGGAC	6 cut(s)	167, 1306, 1600, 2175, 2706, 3391
BsmI	GAATGC	2 cut(s)	1438, 2575
BsnI	GGCC	9 cut(s)	251, 299, 424, 536, 1332, 1393, 1413, 2538, 2937
Bso31I	GGTCTC	3 cut(s)	1137, 1599, 1632
BsoBI	CYCGRG	4 cut(s)	176, 1860, 1908, 2845
Bsp1286I	GDGCHC	7 cut(s)	351, 403, 1632, 1774, 2710, 2814, 3179
Bsp13I	TCCGGA	1 cut(s)	3547
Bsp1720I	GCTNAGC	1 cut(s)	402
Bsp19I	CCATGG	2 cut(s)	675, 3538
BspANI	GGCC	9 cut(s)	251, 299, 424, 536, 1332, 1393, 1413, 2538, 2937
BspCNI	CTCAG	6 cut(s)	415, 1315, 2170, 2302, 2369, 2935
BspDI	ATCGAT	1 cut(s)	69
BspEI	TCCGGA	1 cut(s)	3547
BspFNI	CGCG	1 cut(s)	98
BspHI	TCATGA	1 cut(s)	114
BspLI	GGNNCC	6 cut(s)	193, 673, 697, 2306, 3166, 3595
BspMAI	CTGCAG	1 cut(s)	1762
BspPI	GGATC	6 cut(s)	302, 558, 2109, 2147, 2339, 2419
BspT107I	GGYRCC	2 cut(s)	2304, 3164
BspTI	CTTAAG	2 cut(s)	865, 2309
BspTNI	GGTCTC	3 cut(s)	1137, 1599, 1632
BsrBI	CCGCTC	3 cut(s)	599, 3653, 3667
BsrFI	RCCGGY	2 cut(s)	194, 3677
BssAI	RCCGGY	2 cut(s)	194, 3677
BssSI	CACGAG	3 cut(s)	530, 554, 741
BssT1I	CCWWGG	6 cut(s)	294, 675, 2673, 3217, 3538, 3576
Bst2BI	CACGAG	3 cut(s)	530, 554, 741
Bst2UI	CCWGG	7 cut(s)	232, 420, 1416, 1469, 1643, 2409, 3123
Bst4CI	ACNGT	8 cut(s)	1971, 2108, 2697, 3405, 3429, 3456, 3483, 3514
Bst6I	CTCTTC	6 cut(s)	216, 336, 516, 1105, 2470, 3009
BstAFI	CTTAAG	2 cut(s)	865, 2309
BstAPI	GCANNNNNTGC	1 cut(s)	3242
BstBAI	YACGTR	2 cut(s)	2400, 3056
BstC8I	GCNNGC	9 cut(s)	1155, 1395, 1568, 1704, 2186, 3049, 3655, 3662, 3669
BstDEI	CTNAG	9 cut(s)	402, 1323, 1489, 2157, 2289, 2356, 2421, 2943, 3283
BstDSI	CCRYGG	3 cut(s)	319, 675, 3538
BstEII	GGTNACC	3 cut(s)	3399, 3434, 3461
BstFNI	CGCG	1 cut(s)	98
BstH2I	RGCGCY	1 cut(s)	3526
BstHHI	GCGC	2 cut(s)	103, 3525
BstMAI	GTCTC	9 cut(s)	133, 186, 432, 1137, 1599, 1632, 2744, 2890, 3601
BstMCI	CGRYCG	1 cut(s)	142
BstNI	CCWGG	7 cut(s)	232, 420, 1416, 1469, 1643, 2409, 3123
BstNSI	RCATGY	2 cut(s)	2960, 2967
BstPAI	GACNNNNGTC	1 cut(s)	1591
BstPI	GGTNACC	3 cut(s)	3399, 3434, 3461
BstSFI	CTRYAG	3 cut(s)	1032, 1758, 2547
BstSLI	GKGCMC	2 cut(s)	1774, 3179
BstUI	CGCG	1 cut(s)	98
BstV1I	GCAGC	8 cut(s)	247, 467, 512, 817, 1015, 1783, 2539, 3669
BstV2I	GAAGAC	1 cut(s)	1522
BstX2I	RGATCY	3 cut(s)	550, 2279, 2344
BstXI	CCANNNNNNTGG	1 cut(s)	1064
BstYI	RGATCY	3 cut(s)	550, 2279, 2344
Bsu15I	ATCGAT	1 cut(s)	69
Bsu36I	CCTNAGG	1 cut(s)	2157
BsuRI	GGCC	9 cut(s)	251, 299, 424, 536, 1332, 1393, 1413, 2538, 2937
BsuTUI	ATCGAT	1 cut(s)	69
BtgI	CCRYGG	3 cut(s)	319, 675, 3538
BtgZI	GCGATG	1 cut(s)	298
BtrI	CACGTC	2 cut(s)	1989, 2862
BtsI	GCAGTG	3 cut(s)	160, 989, 1755
BtsIMutI	CAGTG	9 cut(s)	160, 361, 815, 989, 1755, 1785, 2546, 2767, 3488
Cac8I	GCNNGC	9 cut(s)	1155, 1395, 1568, 1704, 2186, 3049, 3655, 3662, 3669
CciI	TCATGA	1 cut(s)	114
CfoI	GCGC	2 cut(s)	103, 3525
Cfr10I	RCCGGY	2 cut(s)	194, 3677
Cfr13I	GGNCC	8 cut(s)	422, 696, 859, 1392, 1412, 2479, 2536, 2935
ClaI	ATCGAT	1 cut(s)	69
CspAI	ACCGGT	1 cut(s)	3677
DdeI	CTNAG	9 cut(s)	402, 1323, 1489, 2157, 2289, 2356, 2421, 2943, 3283
DraIII	CACNNNGTG	1 cut(s)	922
Eam1104I	CTCTTC	6 cut(s)	216, 336, 516, 1105, 2470, 3009
EarI	CTCTTC	6 cut(s)	216, 336, 516, 1105, 2470, 3009
Eco130I	CCWWGG	6 cut(s)	294, 675, 2673, 3217, 3538, 3576
Eco147I	AGGCCT	1 cut(s)	536
Eco24I	GRGCYC	1 cut(s)	1632
Eco31I	GGTCTC	3 cut(s)	1137, 1599, 1632
Eco47I	GGWCC	3 cut(s)	696, 859, 2479
Eco47III	AGCGCT	1 cut(s)	3524
Eco57I	CTGAAG	5 cut(s)	497, 944, 1319, 1685, 3132
Eco72I	CACGTG	1 cut(s)	2400
Eco81I	CCTNAGG	1 cut(s)	2157
Eco88I	CYCGRG	4 cut(s)	176, 1860, 1908, 2845
Eco91I	GGTNACC	3 cut(s)	3399, 3434, 3461
EcoO109I	RGGNCCY	1 cut(s)	859
EcoO65I	GGTNACC	3 cut(s)	3399, 3434, 3461
EcoRI	GAATTC	1 cut(s)	1309
EcoRII	CCWGG	7 cut(s)	230, 418, 1414, 1467, 1641, 2407, 3121
EcoT14I	CCWWGG	6 cut(s)	294, 675, 2673, 3217, 3538, 3576
EcoT22I	ATGCAT	2 cut(s)	478, 3247
EcoT38I	GRGCYC	1 cut(s)	1632
ErhI	CCWWGG	6 cut(s)	294, 675, 2673, 3217, 3538, 3576
Esp3I	CGTCTC	4 cut(s)	133, 432, 2744, 3601
FalI	AAGNNNNNCTT	2 cut(s)	2202, 2234
FaqI	GGGAC	6 cut(s)	167, 1306, 1600, 2175, 2706, 3391
FauI	CCCGC	2 cut(s)	1402, 3655
FauNDI	CATATG	2 cut(s)	1137, 1936
FbaI	TGATCA	1 cut(s)	3495
FriOI	GRGCYC	1 cut(s)	1632
FspBI	CTAG	3 cut(s)	800, 2076, 2900
GlaI	GCGC	2 cut(s)	102, 3524
GsuI	CTGGAG	2 cut(s)	337, 2668
HaeII	RGCGCY	1 cut(s)	3526
HaeIII	GGCC	9 cut(s)	251, 299, 424, 536, 1332, 1393, 1413, 2538, 2937
HapII	CCGG	7 cut(s)	17, 189, 195, 1514, 1632, 3548, 3678
HhaI	GCGC	2 cut(s)	103, 3525
Hin6I	GCGC	2 cut(s)	101, 3523
HinP1I	GCGC	2 cut(s)	101, 3523
HincII	GTYRAC	1 cut(s)	2680
HindII	GTYRAC	1 cut(s)	2680
HindIII	AAGCTT	1 cut(s)	1978
HpaI	GTTAAC	1 cut(s)	2680
HpaII	CCGG	7 cut(s)	17, 189, 195, 1514, 1632, 3548, 3678
HphI	GGTGA	4 cut(s)	950, 1293, 3182, 3497
Hpy166II	GTNNAC	6 cut(s)	487, 832, 1772, 2118, 2680, 3377
Hpy8I	GTNNAC	6 cut(s)	487, 832, 1772, 2118, 2680, 3377
Hpy99I	CGWCG	1 cut(s)	3615
HpyAV	CCTTC	9 cut(s)	876, 1082, 1343, 1474, 1660, 1826, 1874, 2948, 3107
HpyCH4III	ACNGT	8 cut(s)	1971, 2108, 2697, 3405, 3429, 3456, 3483, 3514
HpyCH4IV	ACGT	5 cut(s)	483, 1988, 2399, 2861, 3055
HpyF3I	CTNAG	9 cut(s)	402, 1323, 1489, 2157, 2289, 2356, 2421, 2943, 3283
HpySE526I	ACGT	5 cut(s)	483, 1988, 2399, 2861, 3055
HspAI	GCGC	2 cut(s)	101, 3523
Kpn2I	TCCGGA	1 cut(s)	3547
KpnI	GGTACC	2 cut(s)	2308, 3168
Ksp22I	TGATCA	1 cut(s)	3495
KspAI	GTTAAC	1 cut(s)	2680
Lsp1109I	GCAGC	8 cut(s)	247, 467, 512, 817, 1015, 1783, 2539, 3669
MaeI	CTAG	3 cut(s)	800, 2076, 2900
MaeII	ACGT	5 cut(s)	483, 1988, 2399, 2861, 3055
MbiI	CCGCTC	3 cut(s)	599, 3653, 3667
MfeI	CAATTG	2 cut(s)	2454, 2512
MflI	RGATCY	3 cut(s)	550, 2279, 2344
MhlI	GDGCHC	7 cut(s)	351, 403, 1632, 1774, 2710, 2814, 3179
MlyI	GAGTC	7 cut(s)	132, 188, 368, 2468, 3102, 3626, 3637
MmeI	TCCRAC	5 cut(s)	544, 851, 911, 1165, 3273
Mph1103I	ATGCAT	2 cut(s)	478, 3247
MroI	TCCGGA	1 cut(s)	3547
MroXI	GAANNNNTTC	2 cut(s)	1825, 3003
MslI	CAYNNNNRTG	5 cut(s)	71, 354, 376, 982, 1062
MspCI	CTTAAG	2 cut(s)	865, 2309
MspI	CCGG	7 cut(s)	17, 189, 195, 1514, 1632, 3548, 3678
MunI	CAATTG	2 cut(s)	2454, 2512
Mva1269I	GAATGC	2 cut(s)	1438, 2575
MvaI	CCWGG	7 cut(s)	232, 420, 1416, 1469, 1643, 2409, 3123
MvnI	CGCG	1 cut(s)	98
NciI	CCSGG	3 cut(s)	18, 1515, 1632
NcoI	CCATGG	2 cut(s)	675, 3538
NdeI	CATATG	2 cut(s)	1137, 1936
NlaIV	GGNNCC	6 cut(s)	193, 673, 697, 2306, 3166, 3595
NmeAIII	GCCGAG	2 cut(s)	1841, 3622
NmuCI	GTSAC	5 cut(s)	938, 1078, 1299, 2058, 3188
NsiI	ATGCAT	2 cut(s)	478, 3247
NspI	RCATGY	2 cut(s)	2960, 2967
OliI	CACNNNNGTG	2 cut(s)	354, 982
PaeR7I	CTCGAG	1 cut(s)	176
PagI	TCATGA	1 cut(s)	114
PceI	AGGCCT	1 cut(s)	536
PciI	ACATGT	1 cut(s)	2956
PcsI	WCGNNNNNNNCGW	4 cut(s)	47, 66, 174, 537
PctI	GAATGC	2 cut(s)	1438, 2575
PdmI	GAANNNNTTC	2 cut(s)	1825, 3003
Pfl23II	CGTACG	1 cut(s)	93
PflFI	GACNNNGTC	1 cut(s)	1297
PfoI	TCCNGGA	4 cut(s)	16, 1467, 2407, 3121
PinAI	ACCGGT	1 cut(s)	3677
Ple19I	CGATCG	1 cut(s)	142
PleI	GAGTC	7 cut(s)	131, 187, 367, 2467, 3101, 3626, 3637
PmaCI	CACGTG	1 cut(s)	2400
PmlI	CACGTG	1 cut(s)	2400
PpsI	GAGTC	7 cut(s)	131, 187, 367, 2467, 3101, 3626, 3637
Ppu21I	YACGTR	2 cut(s)	2400, 3056
PpuMI	RGGWCCY	1 cut(s)	859
PscI	ACATGT	1 cut(s)	2956
PshAI	GACNNNNGTC	1 cut(s)	1591
PshBI	ATTAAT	1 cut(s)	654
PsiI	TTATAA	1 cut(s)	1443
Psp5II	RGGWCCY	1 cut(s)	859
Psp6I	CCWGG	7 cut(s)	230, 418, 1414, 1467, 1641, 2407, 3121
PspCI	CACGTG	1 cut(s)	2400
PspEI	GGTNACC	3 cut(s)	3399, 3434, 3461
PspGI	CCWGG	7 cut(s)	230, 418, 1414, 1467, 1641, 2407, 3121
PspLI	CGTACG	1 cut(s)	93
PspN4I	GGNNCC	6 cut(s)	193, 673, 697, 2306, 3166, 3595
PspPI	GGNCC	8 cut(s)	422, 696, 859, 1392, 1412, 2479, 2536, 2935
PspPPI	RGGWCCY	1 cut(s)	859
PspXI	VCTCGAGB	1 cut(s)	176
PstI	CTGCAG	1 cut(s)	1762
PsuI	RGATCY	3 cut(s)	550, 2279, 2344
PsyI	GACNNNGTC	1 cut(s)	1297
PvuI	CGATCG	1 cut(s)	142
RseI	CAYNNNNRTG	5 cut(s)	71, 354, 376, 982, 1062
Sau96I	GGNCC	8 cut(s)	422, 696, 859, 1392, 1412, 2479, 2536, 2935
ScaI	AGTACT	1 cut(s)	1348
SchI	GAGTC	7 cut(s)	132, 188, 368, 2468, 3102, 3626, 3637
SduI	GDGCHC	7 cut(s)	351, 403, 1632, 1774, 2710, 2814, 3179
SfcI	CTRYAG	3 cut(s)	1032, 1758, 2547
Sfr274I	CTCGAG	1 cut(s)	176
SinI	GGWCC	3 cut(s)	696, 859, 2479
SlaI	CTCGAG	1 cut(s)	176
SmiMI	CAYNNNNRTG	5 cut(s)	71, 354, 376, 982, 1062
SmlI	CTYRAG	5 cut(s)	176, 865, 1120, 2208, 2309
SmoI	CTYRAG	5 cut(s)	176, 865, 1120, 2208, 2309
SseBI	AGGCCT	1 cut(s)	536
SspI	AATATT	1 cut(s)	3018
SspMI	CTAG	3 cut(s)	800, 2076, 2900
StuI	AGGCCT	1 cut(s)	536
StyI	CCWWGG	6 cut(s)	294, 675, 2673, 3217, 3538, 3576
TaaI	ACNGT	8 cut(s)	1971, 2108, 2697, 3405, 3429, 3456, 3483, 3514
TaiI	ACGT	5 cut(s)	486, 1991, 2402, 2864, 3058
TaqII	GACCGA	1 cut(s)	320
TatI	WGTACW	2 cut(s)	1346, 1660
TauI	GCSGC	7 cut(s)	101, 327, 330, 599, 3653, 3667, 3674
TscAI	CASTG	9 cut(s)	167, 361, 822, 989, 1762, 1792, 2546, 2767, 3488
TseFI	GTSAC	5 cut(s)	938, 1078, 1299, 2058, 3188
TseI	GCWGC	8 cut(s)	235, 455, 525, 805, 1028, 1796, 2552, 3657
Tsp45I	GTSAC	5 cut(s)	938, 1078, 1299, 2058, 3188
TspGWI	ACGGA	5 cut(s)	2731, 3403, 3556, 3606, 3628
TspRI	CASTG	9 cut(s)	167, 361, 822, 989, 1762, 1792, 2546, 2767, 3488
Tth111I	GACNNNGTC	1 cut(s)	1297
Vha464I	CTTAAG	2 cut(s)	865, 2309
VneI	GTGCAC	1 cut(s)	1770
VpaK11BI	GGWCC	3 cut(s)	696, 859, 2479
VspI	ATTAAT	1 cut(s)	654
XapI	RAATTY	8 cut(s)	908, 1309, 1497, 1649, 2137, 2786, 3105, 3304
XceI	RCATGY	2 cut(s)	2960, 2967
XcmI	CCANNNNNNNNNTGG	2 cut(s)	706, 1475
XhoI	CTCGAG	1 cut(s)	176
XmnI	GAANNNNTTC	2 cut(s)	1825, 3003
XspI	CTAG	3 cut(s)	800, 2076, 2900
ZrmI	AGTACT	1 cut(s)	1348
Zsp2I	ATGCAT	2 cut(s)	478, 3247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.