Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8013204.1

Orthogroup ID

OG0005759

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 373

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8013204.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atgaacgacgagagcctccggcaggatttggacccccaaagcgatcagagctccgattacctcccacctcagccccaccaccctctcccttcccaaccccaaccccacccccagcctcgccgcccacgtggcttcgccgccacagccgcagccggctcggtgggccccgtctctccctcctccaccaaggggggaaggagagagagggagaaggagaaggagcggacgaagctccgagaacgcctccgccgatcaatcaccagccgcatgctcgccggactccgccagtacggcaatttccccctgcctgcgcgcgcagacatgaacgatgtgctcgcagctctggcgcgtgaggccggctgggtcgtcgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

BES1_N Glyco_hydro_14

Protein Analysis

124

Amino Acids

13.83

Weight (kDa)

10.22

Isoelectric Point (pI)

77.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45300 AT5G45300 AT5G45300
fragaria_vesca	FvH4_5g24520 FvH4_5g24520 FvH4_5g24520 FvH4_5g24520 FvH4_5g24520
malus_domestica	MD06G1012600.v1.1
prunus_persica	Prupe.5G013400_v2.0.a1 Prupe.5G013400_v2.0.a1 Prupe.5G013400_v2.0.a1 Prupe.5G013400_v2.0.a1 Prupe.5G013400_v2.0.a1
pyrus_communis	pycom06g01050
rosa_chinensis	RchiOBHm_Chr7g0215001
rosa_laevigata	RLG00000002702
rosa_multiflora	Rmu_co8013204.1_g000001 Rmu_sc0004525.1_g000013 Rmu_ssc0000134.1_g000045
rosa_roxburghii	Rroxscaffold_3G00244800
rosa_rugosa	Rorug07G0149100
rosa_samantha	Rh7AG286200 Rh7BG277900 Rh7CG305300 Rh7CG305400 Rh7DG289500
rosa_wichuraiana	Rw7G024410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	223
AccII	CGCG	3 cut(s)	313, 315, 349
AciI	CCGC	7 cut(s)	121, 138, 147, 223, 247, 265, 283
AcvI	CACGTG	1 cut(s)	128
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	2 cut(s)	22, 189
AluBI	AGCT	3 cut(s)	51, 232, 341
AluI	AGCT	3 cut(s)	51, 232, 341
Alw21I	GWGCWC	2 cut(s)	53, 336
Alw26I	GTCTC	1 cut(s)	175
AoxI	GGCC	2 cut(s)	163, 354
ApaI	GGGCCC	1 cut(s)	167
ApeKI	GCWGC	2 cut(s)	149, 338
AspLEI	GCGC	4 cut(s)	313, 315, 317, 349
AspS9I	GGNCC	3 cut(s)	31, 163, 164
AsuHPI	GGTGA	1 cut(s)	250
AvaII	GGWCC	1 cut(s)	31
BaeGI	GKGCMC	1 cut(s)	167
BanII	GRGCYC	2 cut(s)	53, 167
BbrPI	CACGTG	1 cut(s)	128
Bbv12I	GWGCWC	2 cut(s)	53, 336
BbvCI	CCTCAGC	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	161, 350
BceAI	ACGGC	1 cut(s)	307
BcgI	CGANNNNNNTGC	2 cut(s)	138, 172
BcoDI	GTCTC	1 cut(s)	175
BglI	GCCNNNNNGGC	2 cut(s)	129, 291
BisI	GCNGC	6 cut(s)	121, 138, 147, 150, 265, 339
BlsI	GCNGC	6 cut(s)	122, 139, 148, 151, 266, 340
Bme18I	GGWCC	1 cut(s)	31
BmgT120I	GGNCC	3 cut(s)	31, 163, 164
BmiI	GGNNCC	3 cut(s)	33, 165, 166
BplI	GAGNNNNNCTC	2 cut(s)	228, 260
Bpu10I	CCTNAGC	1 cut(s)	69
BsaAI	YACGTR	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 189
Bse118I	RCCGGY	2 cut(s)	152, 356
Bse1I	ACTGG	1 cut(s)	286
BseDI	CCNNGG	1 cut(s)	186
BseLI	CCNNNNNNNGG	2 cut(s)	22, 189
BseMII	CTCAG	1 cut(s)	83
BseNI	ACTGG	1 cut(s)	286
BsePI	GCGCGC	2 cut(s)	311, 313
BseRI	GAGGAG	1 cut(s)	169
BseSI	GKGCMC	1 cut(s)	167
BseXI	GCAGC	2 cut(s)	161, 350
BseYI	CCCAGC	2 cut(s)	111, 360
Bsh1236I	CGCG	3 cut(s)	313, 315, 349
BshFI	GGCC	2 cut(s)	165, 356
BsiHKAI	GWGCWC	2 cut(s)	53, 336
BsiSI	CCGG	4 cut(s)	19, 153, 276, 357
BslI	CCNNNNNNNGG	2 cut(s)	22, 189
BsmAI	GTCTC	1 cut(s)	175
BsmBI	CGTCTC	1 cut(s)	175
BsnI	GGCC	2 cut(s)	165, 356
Bsp120I	GGGCCC	1 cut(s)	163
Bsp1286I	GDGCHC	3 cut(s)	53, 167, 336
Bsp143I	GATC	2 cut(s)	43, 251
BspACI	CCGC	7 cut(s)	121, 138, 147, 223, 247, 265, 283
BspANI	GGCC	2 cut(s)	165, 356
BspCNI	CTCAG	1 cut(s)	82
BspFNI	CGCG	3 cut(s)	313, 315, 349
BspLI	GGNNCC	3 cut(s)	33, 165, 166
BsrBI	CCGCTC	1 cut(s)	223
BsrFI	RCCGGY	2 cut(s)	152, 356
BsrI	ACTGG	1 cut(s)	286
BssAI	RCCGGY	2 cut(s)	152, 356
BssECI	CCNNGG	1 cut(s)	186
BssHII	GCGCGC	2 cut(s)	311, 313
BssMI	GATC	2 cut(s)	43, 251
BssT1I	CCWWGG	1 cut(s)	186
BstBAI	YACGTR	1 cut(s)	128
BstC8I	GCNNGC	8 cut(s)	154, 269, 273, 309, 313, 315, 336, 358
BstDEI	CTNAG	1 cut(s)	69
BstENI	CCTNNNNNAGG	1 cut(s)	20
BstFNI	CGCG	3 cut(s)	313, 315, 349
BstHHI	GCGC	4 cut(s)	313, 315, 317, 349
BstKTI	GATC	2 cut(s)	46, 254
BstMAI	GTCTC	1 cut(s)	175
BstMBI	GATC	2 cut(s)	43, 251
BstMWI	GCNNNNNNNGC	9 cut(s)	48, 129, 143, 146, 162, 229, 291, 344, 353
BstNSI	RCATGY	1 cut(s)	271
BstSLI	GKGCMC	1 cut(s)	167
BstUI	CGCG	3 cut(s)	313, 315, 349
BstV1I	GCAGC	2 cut(s)	161, 350
BsuRI	GGCC	2 cut(s)	165, 356
Cac8I	GCNNGC	8 cut(s)	154, 269, 273, 309, 313, 315, 336, 358
CfoI	GCGC	4 cut(s)	313, 315, 317, 349
Cfr10I	RCCGGY	2 cut(s)	152, 356
Cfr13I	GGNCC	3 cut(s)	31, 163, 164
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	2 cut(s)	268, 322
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	2 cut(s)	45, 253
DpnII	GATC	2 cut(s)	43, 251
EciI	GGCGGA	2 cut(s)	236, 272
Ecl136II	GAGCTC	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	186
Eco24I	GRGCYC	2 cut(s)	53, 167
Eco47I	GGWCC	1 cut(s)	31
Eco53kI	GAGCTC	1 cut(s)	51
Eco72I	CACGTG	1 cut(s)	128
EcoICRI	GAGCTC	1 cut(s)	51
EcoNI	CCTNNNNNAGG	1 cut(s)	20
EcoO109I	RGGNCCY	1 cut(s)	164
EcoT14I	CCWWGG	1 cut(s)	186
EcoT38I	GRGCYC	2 cut(s)	53, 167
ErhI	CCWWGG	1 cut(s)	186
Esp3I	CGTCTC	1 cut(s)	175
FaeI	CATG	2 cut(s)	271, 325
FaiI	YATR	2 cut(s)	269, 323
FatI	CATG	2 cut(s)	267, 321
Fnu4HI	GCNGC	6 cut(s)	121, 138, 147, 150, 265, 339
FriOI	GRGCYC	2 cut(s)	53, 167
Fsp4HI	GCNGC	6 cut(s)	121, 138, 147, 150, 265, 339
GlaI	GCGC	4 cut(s)	312, 314, 316, 348
GluI	GCNGC	6 cut(s)	121, 138, 147, 150, 265, 339
GsaI	CCCAGC	2 cut(s)	115, 364
HaeIII	GGCC	2 cut(s)	165, 356
HapII	CCGG	4 cut(s)	19, 153, 276, 357
HhaI	GCGC	4 cut(s)	313, 315, 317, 349
Hin1II	CATG	2 cut(s)	271, 325
Hin6I	GCGC	4 cut(s)	311, 313, 315, 347
HinP1I	GCGC	4 cut(s)	311, 313, 315, 347
HinfI	GANTC	1 cut(s)	279
HpaII	CCGG	4 cut(s)	19, 153, 276, 357
HphI	GGTGA	1 cut(s)	250
Hpy188I	TCNGA	3 cut(s)	48, 55, 236
Hpy99I	CGWCG	2 cut(s)	11, 371
HpyAV	CCTTC	4 cut(s)	99, 189, 205, 211
HpyCH4IV	ACGT	1 cut(s)	127
HpyF10VI	GCNNNNNNNGC	9 cut(s)	48, 129, 143, 146, 162, 229, 291, 344, 353
HpyF3I	CTNAG	1 cut(s)	69
HpySE526I	ACGT	1 cut(s)	127
Hsp92II	CATG	2 cut(s)	271, 325
HspAI	GCGC	4 cut(s)	311, 313, 315, 347
KroI	GCCGGC	2 cut(s)	152, 356
KroNI	GCCGGC	2 cut(s)	154, 358
Kzo9I	GATC	2 cut(s)	43, 251
LmnI	GCTCC	3 cut(s)	56, 220, 237
Lsp1109I	GCAGC	2 cut(s)	161, 350
MaeII	ACGT	1 cut(s)	127
MalI	GATC	2 cut(s)	45, 253
MbiI	CCGCTC	1 cut(s)	223
MboI	GATC	2 cut(s)	43, 251
MhlI	GDGCHC	3 cut(s)	53, 167, 336
MluCI	AATT	1 cut(s)	295
MlyI	GAGTC	1 cut(s)	273
MroNI	GCCGGC	2 cut(s)	152, 356
MspI	CCGG	4 cut(s)	19, 153, 276, 357
MvnI	CGCG	3 cut(s)	313, 315, 349
MwoI	GCNNNNNNNGC	9 cut(s)	48, 129, 143, 146, 162, 229, 291, 344, 353
NaeI	GCCGGC	2 cut(s)	154, 358
NdeII	GATC	2 cut(s)	43, 251
NgoMIV	GCCGGC	2 cut(s)	152, 356
NlaIII	CATG	2 cut(s)	271, 325
NlaIV	GGNNCC	3 cut(s)	33, 165, 166
NspI	RCATGY	1 cut(s)	271
PaeI	GCATGC	1 cut(s)	271
PauI	GCGCGC	2 cut(s)	311, 313
PcsI	WCGNNNNNNNCGW	2 cut(s)	124, 247
PdiI	GCCGGC	2 cut(s)	154, 358
PkrI	GCNGC	6 cut(s)	122, 139, 148, 151, 266, 340
PleI	GAGTC	1 cut(s)	273
PmaCI	CACGTG	1 cut(s)	128
PmlI	CACGTG	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	273
Ppu21I	YACGTR	1 cut(s)	128
Psp124BI	GAGCTC	1 cut(s)	53
PspCI	CACGTG	1 cut(s)	128
PspFI	CCCAGC	2 cut(s)	111, 360
PspN4I	GGNNCC	3 cut(s)	33, 165, 166
PspOMI	GGGCCC	1 cut(s)	163
PspPI	GGNCC	3 cut(s)	31, 163, 164
PteI	GCGCGC	2 cut(s)	311, 313
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
SacI	GAGCTC	1 cut(s)	53
SatI	GCNGC	6 cut(s)	121, 138, 147, 150, 265, 339
Sau3AI	GATC	2 cut(s)	43, 251
Sau96I	GGNCC	3 cut(s)	31, 163, 164
SchI	GAGTC	1 cut(s)	273
SduI	GDGCHC	3 cut(s)	53, 167, 336
SetI	ASST	6 cut(s)	53, 63, 70, 130, 234, 343
SinI	GGWCC	1 cut(s)	31
SphI	GCATGC	1 cut(s)	271
Sse9I	AATT	1 cut(s)	295
SsiI	CCGC	7 cut(s)	121, 138, 147, 223, 247, 265, 283
SstI	GAGCTC	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	186
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	1 cut(s)	369
TasI	AATT	1 cut(s)	295
TauI	GCSGC	4 cut(s)	123, 140, 149, 267
TseI	GCWGC	2 cut(s)	149, 338
TspDTI	ATGAA	2 cut(s)	17, 338
VpaK11BI	GGWCC	1 cut(s)	31
XagI	CCTNNNNNAGG	1 cut(s)	20
XceI	RCATGY	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.