Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005759

Physical Location & Seq

Genomic Coordinates Reverse (-)

11819178 .. 11820144

Gene Structure 967 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0149100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTCTTCGTGTAATAATGTTTCTTTGGCTTTTCCAGATGAAGGCATCAAAGATGGGATGGATTGGGAGCACCGAAAGAAGGATTTGATAAAGGATTTTTCTTTAGTCAATTTTTCTTGGGATTTGTTTTGCAAAACTCAAACCGATATCCAAAATTTTTCAAAGCTTCCACGCACTATGGCTCATATGGAGGAGAGCACTCTGGCAGCTGGCCTTCATCTGGCAGACTCGGCACGGGTTTCTTTGGCTCCGGTGGGGCTTACGGCGCTGCAAACCGACCGGTGGTATATGGTGGGCAGACTTCTTGGCCCTAAGAAAAAATTCCATGGTTTCAAAGGCACCATCTCTACGATTTGGCGCATCAAATCTTGGCTGACGATTCAAGATATGGGAGAGCATATTGCGTTTCAATTTGAGCGTGAGGTTGATAGAAACAAGATCCTGCATGGAGGACCCTGGTTCTACAGAAACACCATGTTGGTGCTTGGAAGGTCCGATGTAATTGGTCCGATGTCTGAGGTTCCCTTGAATCTCGTGGAAACATGGGTCGCTGTCAGAGGACTTCTGGTAGGGCTCCGAAATAAGGCAGTATTGAATCTGGCTGGCTCGACTCTAGGACGGGTAATCCATTTCAACCAAACCGCTCTGCATCGAAAGGAGGAAGAACAGAGGATCTGTTGTGGATATTTTGAACATGGGGAGACAGGTTGTGATGCTTTGTTGACAACAGAGAAAGATGAGATTCAGGCACAGTTACAAGCTACGGCCATGGCTGGGCTGTCTCTGAAGGACAGGACAAGTGGTTCTTGCTCTGTGGGGAAGGACAATAGGATGAGATGGGCATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

BES1_N Glyco_hydro_14

Protein Analysis

282

Amino Acids

31.84

Weight (kDa)

8.5

Isoelectric Point (pI)

31.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	94 - 162	1.8e-10	Domain of unknown function (DUF4283)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45300 AT5G45300 AT5G45300
fragaria_vesca	FvH4_5g24520 FvH4_5g24520 FvH4_5g24520 FvH4_5g24520 FvH4_5g24520
malus_domestica	MD06G1012600.v1.1
prunus_persica	Prupe.5G013400_v2.0.a1 Prupe.5G013400_v2.0.a1 Prupe.5G013400_v2.0.a1 Prupe.5G013400_v2.0.a1 Prupe.5G013400_v2.0.a1
pyrus_communis	pycom06g01050
rosa_chinensis	RchiOBHm_Chr7g0215001
rosa_laevigata	RLG00000002702
rosa_multiflora	Rmu_co8013204.1_g000001 Rmu_sc0004525.1_g000013 Rmu_ssc0000134.1_g000045
rosa_roxburghii	Rroxscaffold_3G00244800
rosa_rugosa	Rorug07G0149100
rosa_samantha	Rh7AG286200 Rh7BG277900 Rh7CG305300 Rh7CG305400 Rh7DG289500
rosa_wichuraiana	Rw7G024410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	338
AccBSI	CCGCTC	1 cut(s)	644
AciI	CCGC	1 cut(s)	642
AclWI	GGATC	2 cut(s)	433, 680
AcoI	YGGCCR	1 cut(s)	765
AcsI	RAATTY	2 cut(s)	154, 320
AcuI	CTGAAG	1 cut(s)	806
AfiI	CCNNNNNNNGG	6 cut(s)	41, 79, 220, 282, 583, 774
AgeI	ACCGGT	1 cut(s)	279
AgsI	TTSAA	8 cut(s)	162, 334, 383, 410, 529, 595, 634, 692
AjnI	CCWGG	1 cut(s)	455
AloI	GAACNNNNNNTCC	2 cut(s)	787, 819
AluBI	AGCT	3 cut(s)	166, 209, 761
AluI	AGCT	3 cut(s)	166, 209, 761
Alw21I	GWGCWC	2 cut(s)	72, 200
Alw26I	GTCTC	2 cut(s)	695, 786
AlwI	GGATC	2 cut(s)	433, 680
AoxI	GGCC	3 cut(s)	211, 307, 765
ApeKI	GCWGC	2 cut(s)	206, 268
ApoI	RAATTY	2 cut(s)	154, 320
AsiGI	ACCGGT	1 cut(s)	279
Asp700I	GAANNNNTTC	1 cut(s)	320
AspLEI	GCGC	2 cut(s)	268, 360
AspS9I	GGNCC	4 cut(s)	308, 452, 492, 506
AvaII	GGWCC	3 cut(s)	452, 492, 506
BanI	GGYRCC	1 cut(s)	338
BanII	GRGCYC	1 cut(s)	576
BauI	CACGAG	1 cut(s)	533
Bbv12I	GWGCWC	2 cut(s)	72, 200
BbvI	GCAGC	2 cut(s)	218, 255
BccI	CCATC	4 cut(s)	47, 52, 350, 831
BceAI	ACGGC	2 cut(s)	279, 780
BciT130I	CCWGG	1 cut(s)	457
BcoDI	GTCTC	2 cut(s)	695, 786
BfaI	CTAG	1 cut(s)	614
BfmI	CTRYAG	1 cut(s)	463
BfoI	RGCGCY	1 cut(s)	269
BisI	GCNGC	2 cut(s)	207, 269
BlsI	GCNGC	2 cut(s)	208, 270
Bme1390I	CCNGG	1 cut(s)	457
Bme18I	GGWCC	3 cut(s)	452, 492, 506
BmgT120I	GGNCC	4 cut(s)	308, 452, 492, 506
BmiI	GGNNCC	5 cut(s)	249, 340, 454, 522, 575
BmrFI	CCNGG	1 cut(s)	457
BmsI	GCATC	4 cut(s)	54, 369, 658, 703
BsaJI	CCNNGG	3 cut(s)	325, 455, 768
BsaWI	WCCGGW	2 cut(s)	250, 279
Bsc4I	CCNNNNNNNGG	6 cut(s)	41, 79, 220, 282, 583, 774
Bse118I	RCCGGY	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	457
BseDI	CCNNGG	3 cut(s)	325, 455, 768
BseGI	GGATG	2 cut(s)	63, 837
BseLI	CCNNNNNNNGG	6 cut(s)	41, 79, 220, 282, 583, 774
BseMII	CTCAG	1 cut(s)	507
BseRI	GAGGAG	1 cut(s)	206
BseXI	GCAGC	2 cut(s)	218, 255
BseYI	CCCAGC	1 cut(s)	773
Bsh1285I	CGRYCG	1 cut(s)	280
BshFI	GGCC	3 cut(s)	213, 309, 767
BshNI	GGYRCC	1 cut(s)	338
BshTI	ACCGGT	1 cut(s)	279
BsiEI	CGRYCG	1 cut(s)	280
BsiHKAI	GWGCWC	2 cut(s)	72, 200
BsiSI	CCGG	2 cut(s)	251, 280
BslI	CCNNNNNNNGG	6 cut(s)	41, 79, 220, 282, 583, 774
BsmAI	GTCTC	2 cut(s)	695, 786
BsnI	GGCC	3 cut(s)	213, 309, 767
Bsp1286I	GDGCHC	3 cut(s)	72, 200, 576
Bsp143I	GATC	2 cut(s)	438, 672
Bsp19I	CCATGG	2 cut(s)	325, 768
BspACI	CCGC	1 cut(s)	642
BspANI	GGCC	3 cut(s)	213, 309, 767
BspCNI	CTCAG	1 cut(s)	508
BspLI	GGNNCC	5 cut(s)	249, 340, 454, 522, 575
BspPI	GGATC	2 cut(s)	433, 680
BspT107I	GGYRCC	1 cut(s)	338
BsrBI	CCGCTC	1 cut(s)	644
BsrFI	RCCGGY	1 cut(s)	279
BssAI	RCCGGY	1 cut(s)	279
BssECI	CCNNGG	3 cut(s)	325, 455, 768
BssMI	GATC	2 cut(s)	438, 672
BssSI	CACGAG	1 cut(s)	533
BssT1I	CCWWGG	2 cut(s)	325, 768
Bst2BI	CACGAG	1 cut(s)	533
Bst2UI	CCWGG	1 cut(s)	457
Bst4CI	ACNGT	1 cut(s)	753
BstC8I	GCNNGC	2 cut(s)	211, 604
BstDEI	CTNAG	2 cut(s)	312, 516
BstDSI	CCRYGG	2 cut(s)	325, 768
BstF5I	GGATG	2 cut(s)	63, 837
BstH2I	RGCGCY	1 cut(s)	269
BstHHI	GCGC	2 cut(s)	268, 360
BstKTI	GATC	2 cut(s)	441, 675
BstMAI	GTCTC	2 cut(s)	695, 786
BstMBI	GATC	2 cut(s)	438, 672
BstMCI	CGRYCG	1 cut(s)	280
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 265
BstNI	CCWGG	1 cut(s)	457
BstSCI	CCNGG	1 cut(s)	455
BstSFI	CTRYAG	1 cut(s)	463
BstV1I	GCAGC	2 cut(s)	218, 255
BstX2I	RGATCY	2 cut(s)	438, 672
BstYI	RGATCY	2 cut(s)	438, 672
BsuRI	GGCC	3 cut(s)	213, 309, 767
BtgI	CCRYGG	2 cut(s)	325, 768
BtsCI	GGATG	2 cut(s)	63, 837
Cac8I	GCNNGC	2 cut(s)	211, 604
CfoI	GCGC	2 cut(s)	268, 360
Cfr10I	RCCGGY	1 cut(s)	279
Cfr13I	GGNCC	4 cut(s)	308, 452, 492, 506
CspAI	ACCGGT	1 cut(s)	279
CviAII	CATG	7 cut(s)	326, 446, 475, 543, 695, 769, 843
DdeI	CTNAG	2 cut(s)	312, 516
DpnI	GATC	2 cut(s)	440, 674
DpnII	GATC	2 cut(s)	438, 672
EaeI	YGGCCR	1 cut(s)	765
Eco130I	CCWWGG	2 cut(s)	325, 768
Eco24I	GRGCYC	1 cut(s)	576
Eco32I	GATATC	1 cut(s)	148
Eco47I	GGWCC	3 cut(s)	452, 492, 506
Eco57I	CTGAAG	1 cut(s)	806
EcoO109I	RGGNCCY	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	455
EcoRV	GATATC	1 cut(s)	148
EcoT14I	CCWWGG	2 cut(s)	325, 768
EcoT38I	GRGCYC	1 cut(s)	576
ErhI	CCWWGG	2 cut(s)	325, 768
FaeI	CATG	7 cut(s)	329, 449, 478, 546, 698, 772, 846
FalI	AAGNNNNNCTT	2 cut(s)	790, 822
FatI	CATG	7 cut(s)	325, 445, 474, 542, 694, 768, 842
FauNDI	CATATG	1 cut(s)	186
Fnu4HI	GCNGC	2 cut(s)	207, 269
FokI	GGATG	2 cut(s)	70, 844
FriOI	GRGCYC	1 cut(s)	576
Fsp4HI	GCNGC	2 cut(s)	207, 269
FspBI	CTAG	1 cut(s)	614
GlaI	GCGC	2 cut(s)	267, 359
GluI	GCNGC	2 cut(s)	207, 269
GsaI	CCCAGC	1 cut(s)	777
HaeII	RGCGCY	1 cut(s)	269
HaeIII	GGCC	3 cut(s)	213, 309, 767
HapII	CCGG	2 cut(s)	251, 280
HhaI	GCGC	2 cut(s)	268, 360
Hin1II	CATG	7 cut(s)	329, 449, 478, 546, 698, 772, 846
Hin6I	GCGC	2 cut(s)	266, 358
HinP1I	GCGC	2 cut(s)	266, 358
HincII	GTYRAC	1 cut(s)	723
HindII	GTYRAC	1 cut(s)	723
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	6 cut(s)	227, 379, 529, 595, 610, 742
HpaII	CCGG	2 cut(s)	251, 280
Hpy166II	GTNNAC	1 cut(s)	723
Hpy188I	TCNGA	6 cut(s)	496, 510, 517, 557, 578, 786
Hpy188III	TCNNGA	2 cut(s)	35, 383
Hpy8I	GTNNAC	1 cut(s)	723
HpyAV	CCTTC	6 cut(s)	35, 73, 224, 483, 781, 814
HpyCH4III	ACNGT	1 cut(s)	753
HpyCH4V	TGCA	4 cut(s)	132, 271, 445, 649
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 265
HpyF3I	CTNAG	2 cut(s)	312, 516
Hsp92II	CATG	7 cut(s)	329, 449, 478, 546, 698, 772, 846
HspAI	GCGC	2 cut(s)	266, 358
Kzo9I	GATC	2 cut(s)	438, 672
LmnI	GCTCC	3 cut(s)	67, 253, 579
Lsp1109I	GCAGC	2 cut(s)	218, 255
LweI	GCATC	4 cut(s)	54, 369, 658, 703
MaeI	CTAG	1 cut(s)	614
MaeIII	GTNAC	1 cut(s)	753
MalI	GATC	2 cut(s)	440, 674
MbiI	CCGCTC	1 cut(s)	644
MboI	GATC	2 cut(s)	438, 672
MboII	GAAGA	1 cut(s)	674
MflI	RGATCY	2 cut(s)	438, 672
MhlI	GDGCHC	3 cut(s)	72, 200, 576
MluCI	AATT	5 cut(s)	109, 154, 320, 410, 501
MlyI	GAGTC	2 cut(s)	221, 604
MnlI	CCTC	7 cut(s)	184, 415, 443, 511, 551, 652, 663
MroXI	GAANNNNTTC	1 cut(s)	320
MslI	CAYNNNNRTG	1 cut(s)	479
MspA1I	CMGCKG	1 cut(s)	209
MspI	CCGG	2 cut(s)	251, 280
MspR9I	CCNGG	1 cut(s)	457
MvaI	CCWGG	1 cut(s)	457
MwoI	GCNNNNNNNGC	2 cut(s)	230, 265
NcoI	CCATGG	2 cut(s)	325, 768
NdeI	CATATG	1 cut(s)	186
NdeII	GATC	2 cut(s)	438, 672
NlaIII	CATG	7 cut(s)	329, 449, 478, 546, 698, 772, 846
NlaIV	GGNNCC	5 cut(s)	249, 340, 454, 522, 575
NmeAIII	GCCGAG	1 cut(s)	209
PdmI	GAANNNNTTC	1 cut(s)	320
PfeI	GAWTC	4 cut(s)	379, 529, 595, 742
PinAI	ACCGGT	1 cut(s)	279
PkrI	GCNGC	2 cut(s)	208, 270
PleI	GAGTC	2 cut(s)	221, 604
PpsI	GAGTC	2 cut(s)	221, 604
PpuMI	RGGWCCY	1 cut(s)	452
Psp5II	RGGWCCY	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	455
PspFI	CCCAGC	1 cut(s)	773
PspGI	CCWGG	1 cut(s)	455
PspN4I	GGNNCC	5 cut(s)	249, 340, 454, 522, 575
PspPI	GGNCC	4 cut(s)	308, 452, 492, 506
PspPPI	RGGWCCY	1 cut(s)	452
PsuI	RGATCY	2 cut(s)	438, 672
PvuII	CAGCTG	1 cut(s)	209
RseI	CAYNNNNRTG	1 cut(s)	479
SatI	GCNGC	2 cut(s)	207, 269
Sau3AI	GATC	2 cut(s)	438, 672
Sau96I	GGNCC	4 cut(s)	308, 452, 492, 506
SchI	GAGTC	2 cut(s)	221, 604
ScrFI	CCNGG	1 cut(s)	457
SduI	GDGCHC	3 cut(s)	72, 200, 576
SetI	ASST	7 cut(s)	168, 211, 426, 494, 522, 709, 763
SfaNI	GCATC	4 cut(s)	54, 369, 658, 703
SfcI	CTRYAG	1 cut(s)	463
SinI	GGWCC	3 cut(s)	452, 492, 506
SmiMI	CAYNNNNRTG	1 cut(s)	479
Sse9I	AATT	5 cut(s)	109, 154, 320, 410, 501
SsiI	CCGC	1 cut(s)	642
SspMI	CTAG	1 cut(s)	614
StyD4I	CCNGG	1 cut(s)	455
StyI	CCWWGG	2 cut(s)	325, 768
TaaI	ACNGT	1 cut(s)	753
TaqI	TCGA	2 cut(s)	608, 652
TasI	AATT	5 cut(s)	109, 154, 320, 410, 501
TfiI	GAWTC	4 cut(s)	379, 529, 595, 742
TseI	GCWGC	2 cut(s)	206, 268
TspDTI	ATGAA	2 cut(s)	54, 206
VpaK11BI	GGWCC	3 cut(s)	452, 492, 506
XapI	RAATTY	2 cut(s)	154, 320
XmnI	GAANNNNTTC	1 cut(s)	320
XspI	CTAG	1 cut(s)	614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.