Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8061150.1

Orthogroup ID

OG0005304

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 511

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8061150.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 409 bp

atgtgtttctggggttgctttctgtataagaagtttggtaaacttgacggtaaaggtcttgcaatggatgtcagagaaggtgcatcaattgttatgtttcatggagatttgccatactcttctaaagacattattaagaaattagagactttgaatgaggaacacataattggtgttgggggttttggaacagtgtacaagcttgcaatggatgatggcaatctatttgcactaaaaagaattgtaaagatgaacgagggctttgatcgtttttttgaaagggagctagaaattcttggaagtataaagcatcgctacttagtgaatttgaggggatactgcaattctcctacatcaaagttgttgatctatgattttctatctggtggaagcctcgatgaagctcttc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009664 GO:0009791 GO:0009826 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0022414 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044237 GO:0044249 GO:0044464 GO:0045229 GO:0048316 GO:0048354 GO:0048359 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

136

Amino Acids

15.39

Weight (kDa)

6.82

Isoelectric Point (pI)

19.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31420 AT1G31420 AT1G31420 AT2G35620 AT2G35620 AT2G35620 AT2G35620
fragaria_vesca	FvH4_5g24350 FvH4_5g24350 FvH4_5g24350 FvH4_5g24350
malus_domestica	MD00G1078500.v1.1 MD06G1021300.v1.1 MD16G1288500.v1.1
prunus_persica	Prupe.5G017300_v2.0.a1
pyrus_communis	pycom06g01550 pycom16g25580
rosa_chinensis	RchiOBHm_Chr7g0214561
rosa_laevigata	RLG00000002732
rosa_multiflora	Rmu_co8061150.1_g000001 Rmu_sc0003490.1_g000001 Rmu_sc0003490.1_g000002
rosa_roxburghii	Rroxscaffold_3G00245210
rosa_rugosa	Rorug07G0146900
rosa_samantha	Rh7AG282000 Rh7BG273800 Rh7CG301300 Rh7DG286000
rosa_wichuraiana	Rw7G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	291, 325
AfaI	GTAC	1 cut(s)	197
AgsI	TTSAA	2 cut(s)	154, 278
AjuI	GAANNNNNNNTTGG	2 cut(s)	153, 185
AluBI	AGCT	3 cut(s)	202, 286, 404
AluI	AGCT	3 cut(s)	202, 286, 404
Alw26I	GTCTC	1 cut(s)	140
ApoI	RAATTY	2 cut(s)	291, 325
Asp700I	GAANNNNTTC	1 cut(s)	405
BccI	CCATC	1 cut(s)	209
BciVI	GTATCC	1 cut(s)	329
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	1 cut(s)	287
BfuI	GTATCC	1 cut(s)	329
BmsI	GCATC	2 cut(s)	92, 319
BsaBI	GATNNNNATC	1 cut(s)	219
Bse3DI	GCAATG	2 cut(s)	69, 213
Bse8I	GATNNNNATC	1 cut(s)	219
BseGI	GGATG	2 cut(s)	73, 217
BseJI	GATNNNNATC	1 cut(s)	219
BseMI	GCAATG	2 cut(s)	69, 213
BsmAI	GTCTC	1 cut(s)	140
Bsp1407I	TGTACA	1 cut(s)	195
Bsp143I	GATC	2 cut(s)	265, 366
BsrDI	GCAATG	2 cut(s)	69, 213
BsrGI	TGTACA	1 cut(s)	195
BssMI	GATC	2 cut(s)	265, 366
Bst4CI	ACNGT	2 cut(s)	50, 193
Bst6I	CTCTTC	1 cut(s)	124
BstAUI	TGTACA	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	1 cut(s)	319
BstF5I	GGATG	2 cut(s)	73, 217
BstKTI	GATC	2 cut(s)	268, 369
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	2 cut(s)	265, 366
BsuI	GTATCC	1 cut(s)	329
BtgZI	GCGATG	1 cut(s)	296
BtsCI	GGATG	2 cut(s)	73, 217
BtsIMutI	CAGTG	1 cut(s)	198
Cac8I	GCNNGC	1 cut(s)	204
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	1 cut(s)	101
CviJI	RGCY	5 cut(s)	202, 261, 286, 393, 404
CviKI_1	RGCY	5 cut(s)	202, 261, 286, 393, 404
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	1 cut(s)	319
DpnI	GATC	2 cut(s)	267, 368
DpnII	GATC	2 cut(s)	265, 366
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
FaeI	CATG	1 cut(s)	104
FaiI	YATR	7 cut(s)	27, 95, 102, 115, 167, 305, 372
FatI	CATG	1 cut(s)	100
FokI	GGATG	2 cut(s)	80, 224
FspBI	CTAG	1 cut(s)	287
Hin1II	CATG	1 cut(s)	104
HindIII	AAGCTT	1 cut(s)	200
Hpy166II	GTNNAC	2 cut(s)	41, 196
Hpy188I	TCNGA	1 cut(s)	74
Hpy8I	GTNNAC	2 cut(s)	41, 196
HpyAV	CCTTC	1 cut(s)	71
HpyCH4III	ACNGT	2 cut(s)	50, 193
HpyCH4V	TGCA	5 cut(s)	62, 83, 206, 230, 342
HpyF3I	CTNAG	1 cut(s)	319
Hsp92II	CATG	1 cut(s)	104
Kzo9I	GATC	2 cut(s)	265, 366
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	1 cut(s)	369
LweI	GCATC	2 cut(s)	92, 319
MaeI	CTAG	1 cut(s)	287
MalI	GATC	2 cut(s)	267, 368
MboI	GATC	2 cut(s)	265, 366
MboII	GAAGA	2 cut(s)	111, 398
MfeI	CAATTG	1 cut(s)	87
MluCI	AATT	7 cut(s)	87, 140, 168, 240, 291, 325, 343
MnlI	CCTC	4 cut(s)	151, 250, 324, 404
MroXI	GAANNNNTTC	1 cut(s)	405
MseI	TTAA	1 cut(s)	135
MunI	CAATTG	1 cut(s)	87
NdeII	GATC	2 cut(s)	265, 366
NlaIII	CATG	1 cut(s)	104
PdmI	GAANNNNTTC	1 cut(s)	405
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SaqAI	TTAA	1 cut(s)	135
Sau3AI	GATC	2 cut(s)	265, 366
SetI	ASST	5 cut(s)	58, 82, 204, 288, 406
SfaNI	GCATC	2 cut(s)	92, 319
Sse9I	AATT	7 cut(s)	87, 140, 168, 240, 291, 325, 343
SspMI	CTAG	1 cut(s)	287
TaaI	ACNGT	2 cut(s)	50, 193
TaqI	TCGA	1 cut(s)	396
TasI	AATT	7 cut(s)	87, 140, 168, 240, 291, 325, 343
TatI	WGTACW	1 cut(s)	195
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	1 cut(s)	198
TspDTI	ATGAA	2 cut(s)	89, 266
TspRI	CASTG	1 cut(s)	198
XapI	RAATTY	2 cut(s)	291, 325
XmnI	GAANNNNTTC	1 cut(s)	405
XspI	CTAG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.