Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003490.1

Orthogroup ID

OG0005304

Physical Location & Seq

Genomic Coordinates Forward (+)

782 .. 3117

Gene Structure 2336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003490.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atgcattgcacagaaagatctgagcagctagactgggatgcacgcttgaatattataatgggagcagcaaagggcctggcttacttgcatcatgattgctcacctaggatcatacatcgagatataaagtcgagcaatattttacttgatggaaatcttgaggcacgagtatctgactttggactcgccaaactgttggaggacgaagaatctcacattacgacgattgttgctggaacatttggttatctggctccagagtatatgcaaagtggtagagcaactgaaaagactgatgtttatagttttggggtcctggtgcttgaggtgttgagtgggaagcgaccgacagatgcatcattcattgagaagggccttaacattgttggctggttaaattttctggtcaccgaggataggcaaagagacattgttgatccgcagtgtgaaggagtgcaagctgaaagccttgatgccttgctctccgttgccatacaatgtgtttcttctagtccagaagaccgacccaccatgcacagggtggtccagctgcttgaatctgaggttatgacaccatgccccagtgacttctatgattccaactctgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009664 GO:0009791 GO:0009826 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0022414 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044237 GO:0044249 GO:0044464 GO:0045229 GO:0048316 GO:0048354 GO:0048359 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

203

Amino Acids

22.56

Weight (kDa)

4.64

Isoelectric Point (pI)

60.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31420 AT1G31420 AT1G31420 AT2G35620 AT2G35620 AT2G35620 AT2G35620
fragaria_vesca	FvH4_5g24350 FvH4_5g24350 FvH4_5g24350 FvH4_5g24350
malus_domestica	MD00G1078500.v1.1 MD06G1021300.v1.1 MD16G1288500.v1.1
prunus_persica	Prupe.5G017300_v2.0.a1
pyrus_communis	pycom06g01550 pycom16g25580
rosa_chinensis	RchiOBHm_Chr7g0214561
rosa_laevigata	RLG00000002732
rosa_multiflora	Rmu_co8061150.1_g000001 Rmu_sc0003490.1_g000001 Rmu_sc0003490.1_g000002
rosa_roxburghii	Rroxscaffold_3G00245210
rosa_rugosa	Rorug07G0146900
rosa_samantha	Rh7AG282000 Rh7BG273800 Rh7CG301300 Rh7DG286000
rosa_wichuraiana	Rw7G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	56
AciI	CCGC	1 cut(s)	440
AclWI	GGATC	2 cut(s)	116, 431
AcsI	RAATTY	1 cut(s)	397
AdeI	CACNNNGTG	1 cut(s)	541
AfiI	CCNNNNNNNGG	2 cut(s)	417, 537
AgsI	TTSAA	2 cut(s)	49, 557
AjnI	CCWGG	2 cut(s)	75, 315
AluBI	AGCT	3 cut(s)	28, 461, 550
AluI	AGCT	3 cut(s)	28, 461, 550
Alw26I	GTCTC	1 cut(s)	420
AlwI	GGATC	2 cut(s)	116, 431
AoxI	GGCC	2 cut(s)	73, 373
ApeKI	GCWGC	3 cut(s)	25, 65, 550
ApoI	RAATTY	1 cut(s)	397
AspA2I	CCTAGG	1 cut(s)	104
AspS9I	GGNCC	4 cut(s)	73, 313, 373, 544
AsuHPI	GGTGA	2 cut(s)	93, 400
AvaII	GGWCC	2 cut(s)	313, 544
AvrII	CCTAGG	1 cut(s)	104
BauI	CACGAG	1 cut(s)	165
BbsI	GAAGAC	1 cut(s)	525
BbvI	GCAGC	3 cut(s)	37, 77, 537
BccI	CCATC	1 cut(s)	143
BciT130I	CCWGG	2 cut(s)	77, 317
BcoDI	GTCTC	1 cut(s)	420
BfaI	CTAG	3 cut(s)	29, 105, 510
BglII	AGATCT	1 cut(s)	17
BisI	GCNGC	3 cut(s)	26, 66, 551
BlnI	CCTAGG	1 cut(s)	104
BlsI	GCNGC	3 cut(s)	27, 67, 552
Bme1390I	CCNGG	2 cut(s)	77, 317
Bme18I	GGWCC	2 cut(s)	313, 544
BmgT120I	GGNCC	4 cut(s)	73, 313, 373, 544
BmiI	GGNNCC	2 cut(s)	255, 314
BmrFI	CCNGG	2 cut(s)	77, 317
BmrI	ACTGGG	2 cut(s)	43, 576
BmsI	GCATC	5 cut(s)	28, 97, 343, 365, 463
BmuI	ACTGGG	2 cut(s)	43, 576
BpiI	GAAGAC	1 cut(s)	525
BpmI	CTGGAG	1 cut(s)	240
BpuEI	CTTGAG	2 cut(s)	179, 344
BsaBI	GATNNNNATC	1 cut(s)	153
BsaJI	CCNNGG	2 cut(s)	104, 411
Bsc4I	CCNNNNNNNGG	2 cut(s)	417, 537
Bse1I	ACTGG	2 cut(s)	38, 582
Bse3DI	GCAATG	1 cut(s)	4
Bse8I	GATNNNNATC	1 cut(s)	153
BseBI	CCWGG	2 cut(s)	77, 317
BseDI	CCNNGG	2 cut(s)	104, 411
BseGI	GGATG	1 cut(s)	43
BseJI	GATNNNNATC	1 cut(s)	153
BseLI	CCNNNNNNNGG	2 cut(s)	417, 537
BseMI	GCAATG	1 cut(s)	4
BseMII	CTCAG	2 cut(s)	12, 552
BseNI	ACTGG	2 cut(s)	38, 582
BseXI	GCAGC	3 cut(s)	37, 77, 537
Bsh1285I	CGRYCG	1 cut(s)	347
BshFI	GGCC	2 cut(s)	75, 375
BsiEI	CGRYCG	1 cut(s)	347
BslI	CCNNNNNNNGG	2 cut(s)	417, 537
BsmAI	GTCTC	1 cut(s)	420
BsnI	GGCC	2 cut(s)	75, 375
Bsp143I	GATC	3 cut(s)	17, 108, 436
BspACI	CCGC	1 cut(s)	440
BspANI	GGCC	2 cut(s)	75, 375
BspCNI	CTCAG	2 cut(s)	13, 553
BspHI	TCATGA	1 cut(s)	91
BspLI	GGNNCC	2 cut(s)	255, 314
BspPI	GGATC	2 cut(s)	116, 431
BsrDI	GCAATG	1 cut(s)	4
BsrI	ACTGG	2 cut(s)	38, 582
BssECI	CCNNGG	2 cut(s)	104, 411
BssMI	GATC	3 cut(s)	17, 108, 436
BssSI	CACGAG	1 cut(s)	165
BssT1I	CCWWGG	1 cut(s)	104
Bst2BI	CACGAG	1 cut(s)	165
Bst2UI	CCWGG	2 cut(s)	77, 317
Bst4CI	ACNGT	1 cut(s)	195
BstC8I	GCNNGC	2 cut(s)	43, 459
BstDEI	CTNAG	2 cut(s)	21, 561
BstEII	GGTNACC	1 cut(s)	406
BstF5I	GGATG	1 cut(s)	43
BstKTI	GATC	3 cut(s)	20, 111, 439
BstMAI	GTCTC	1 cut(s)	420
BstMBI	GATC	3 cut(s)	17, 108, 436
BstMCI	CGRYCG	1 cut(s)	347
BstNI	CCWGG	2 cut(s)	77, 317
BstPI	GGTNACC	1 cut(s)	406
BstSCI	CCNGG	2 cut(s)	75, 315
BstV1I	GCAGC	3 cut(s)	37, 77, 537
BstV2I	GAAGAC	1 cut(s)	525
BstX2I	RGATCY	1 cut(s)	17
BstXI	CCANNNNNNTGG	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	17
BsuRI	GGCC	2 cut(s)	75, 375
BtsCI	GGATG	1 cut(s)	43
BtsI	GCAGTG	1 cut(s)	449
BtsIMutI	CAGTG	2 cut(s)	449, 589
Cac8I	GCNNGC	2 cut(s)	43, 459
CciI	TCATGA	1 cut(s)	91
Cfr13I	GGNCC	4 cut(s)	73, 313, 373, 544
CviAII	CATG	3 cut(s)	92, 532, 576
CviJI	RGCY	9 cut(s)	28, 75, 80, 254, 375, 390, 461, 468, 550
CviKI_1	RGCY	9 cut(s)	28, 75, 80, 254, 375, 390, 461, 468, 550
DdeI	CTNAG	2 cut(s)	21, 561
DpnI	GATC	3 cut(s)	19, 110, 438
DpnII	GATC	3 cut(s)	17, 108, 436
DraIII	CACNNNGTG	1 cut(s)	541
Eco130I	CCWWGG	1 cut(s)	104
Eco47I	GGWCC	2 cut(s)	313, 544
Eco91I	GGTNACC	1 cut(s)	406
EcoO109I	RGGNCCY	3 cut(s)	73, 313, 373
EcoO65I	GGTNACC	1 cut(s)	406
EcoRII	CCWGG	2 cut(s)	75, 315
EcoT14I	CCWWGG	1 cut(s)	104
EcoT22I	ATGCAT	2 cut(s)	6, 358
ErhI	CCWWGG	1 cut(s)	104
FaeI	CATG	3 cut(s)	95, 535, 579
FatI	CATG	3 cut(s)	91, 531, 575
Fnu4HI	GCNGC	3 cut(s)	26, 66, 551
FokI	GGATG	1 cut(s)	50
Fsp4HI	GCNGC	3 cut(s)	26, 66, 551
FspBI	CTAG	3 cut(s)	29, 105, 510
GluI	GCNGC	3 cut(s)	26, 66, 551
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	2 cut(s)	75, 375
Hin1II	CATG	3 cut(s)	95, 535, 579
HinfI	GANTC	4 cut(s)	183, 209, 557, 596
HphI	GGTGA	2 cut(s)	93, 400
Hpy188I	TCNGA	4 cut(s)	22, 175, 562, 607
Hpy188III	TCNNGA	5 cut(s)	92, 119, 158, 257, 515
Hpy99I	CGWCG	1 cut(s)	226
HpyAV	CCTTC	2 cut(s)	364, 443
HpyCH4III	ACNGT	1 cut(s)	195
HpyCH4V	TGCA	8 cut(s)	4, 9, 41, 88, 268, 356, 457, 535
HpyF3I	CTNAG	2 cut(s)	21, 561
Hsp92II	CATG	3 cut(s)	95, 535, 579
Kzo9I	GATC	3 cut(s)	17, 108, 436
LmnI	GCTCC	2 cut(s)	62, 259
Lsp1109I	GCAGC	3 cut(s)	37, 77, 537
LweI	GCATC	5 cut(s)	28, 97, 343, 365, 463
MaeI	CTAG	3 cut(s)	29, 105, 510
MaeIII	GTNAC	2 cut(s)	406, 584
MalI	GATC	3 cut(s)	19, 110, 438
MboI	GATC	3 cut(s)	17, 108, 436
MboII	GAAGA	3 cut(s)	218, 498, 530
MflI	RGATCY	1 cut(s)	17
MluCI	AATT	1 cut(s)	397
MlyI	GAGTC	1 cut(s)	177
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	5 cut(s)	154, 193, 319, 406, 556
Mph1103I	ATGCAT	2 cut(s)	6, 358
MseI	TTAA	3 cut(s)	378, 395, 610
MspA1I	CMGCKG	1 cut(s)	550
MspR9I	CCNGG	2 cut(s)	77, 317
MvaI	CCWGG	2 cut(s)	77, 317
NdeII	GATC	3 cut(s)	17, 108, 436
NlaIII	CATG	3 cut(s)	95, 535, 579
NlaIV	GGNNCC	2 cut(s)	255, 314
NmuCI	GTSAC	2 cut(s)	406, 584
NsiI	ATGCAT	2 cut(s)	6, 358
PagI	TCATGA	1 cut(s)	91
PfeI	GAWTC	3 cut(s)	209, 557, 596
PkrI	GCNGC	3 cut(s)	27, 67, 552
PleI	GAGTC	1 cut(s)	177
PpsI	GAGTC	1 cut(s)	177
PpuMI	RGGWCCY	1 cut(s)	313
PsiI	TTATAA	1 cut(s)	56
Psp5II	RGGWCCY	1 cut(s)	313
Psp6I	CCWGG	2 cut(s)	75, 315
PspEI	GGTNACC	1 cut(s)	406
PspGI	CCWGG	2 cut(s)	75, 315
PspN4I	GGNNCC	2 cut(s)	255, 314
PspPI	GGNCC	4 cut(s)	73, 313, 373, 544
PspPPI	RGGWCCY	1 cut(s)	313
PsuI	RGATCY	1 cut(s)	17
PvuII	CAGCTG	1 cut(s)	550
SaqAI	TTAA	3 cut(s)	378, 395, 610
SatI	GCNGC	3 cut(s)	26, 66, 551
Sau3AI	GATC	3 cut(s)	17, 108, 436
Sau96I	GGNCC	4 cut(s)	73, 313, 373, 544
SchI	GAGTC	1 cut(s)	177
ScrFI	CCNGG	2 cut(s)	77, 317
SetI	ASST	6 cut(s)	30, 106, 330, 463, 552, 567
SfaNI	GCATC	5 cut(s)	28, 97, 343, 365, 463
SinI	GGWCC	2 cut(s)	313, 544
SmlI	CTYRAG	2 cut(s)	158, 323
SmoI	CTYRAG	2 cut(s)	158, 323
Sse9I	AATT	1 cut(s)	397
SsiI	CCGC	1 cut(s)	440
SspI	AATATT	2 cut(s)	52, 139
SspMI	CTAG	3 cut(s)	29, 105, 510
StyD4I	CCNGG	2 cut(s)	75, 315
StyI	CCWWGG	1 cut(s)	104
TaaI	ACNGT	1 cut(s)	195
TaqI	TCGA	2 cut(s)	118, 131
TaqII	GACCGA	2 cut(s)	361, 537
TasI	AATT	1 cut(s)	397
TfiI	GAWTC	3 cut(s)	209, 557, 596
Tru1I	TTAA	3 cut(s)	378, 395, 610
Tru9I	TTAA	3 cut(s)	378, 395, 610
TscAI	CASTG	2 cut(s)	449, 589
TseFI	GTSAC	2 cut(s)	406, 584
TseI	GCWGC	3 cut(s)	25, 65, 550
Tsp45I	GTSAC	2 cut(s)	406, 584
TspDTI	ATGAA	1 cut(s)	352
TspGWI	ACGGA	1 cut(s)	475
TspRI	CASTG	2 cut(s)	449, 589
VpaK11BI	GGWCC	2 cut(s)	313, 544
XapI	RAATTY	1 cut(s)	397
XcmI	CCANNNNNNNNNTGG	1 cut(s)	538
XmaJI	CCTAGG	1 cut(s)	104
XspI	CTAG	3 cut(s)	29, 105, 510
Zsp2I	ATGCAT	2 cut(s)	6, 358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.