Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003490.1

Orthogroup ID

OG0005304

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 766

Gene Structure 766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003490.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 446 bp

gagcgctgcttctggtggctctcatgtgtttctggggttgctttctgtataagaagtttggtaaacttgacggtaaaggtcttgcaatggatgtcagagaaggtgcatcaattgttatgtttcatggagatttgccatactcttctaaagacattattaagaaattagagactttgaatgaggaacacataattggtgttgggggttttggaacagtgtacaagcttgcaatggatgatggcaatctatttgcactaaaaagaattgtaaagatgaacgagggctttgatcgtttttttgaaagggagctagaaattcttggaagtataaagcatcgctacttagtgaatttgaggggatactgcaattctcctacatcaaagttgttgatctatgattttctatctggtggaagcctcgatgaagctcttcaacataaatgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009664 GO:0009791 GO:0009826 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0022414 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044237 GO:0044249 GO:0044464 GO:0045229 GO:0048316 GO:0048354 GO:0048359 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

147

Amino Acids

16.58

Weight (kDa)

7.86

Isoelectric Point (pI)

22.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31420 AT1G31420 AT1G31420 AT2G35620 AT2G35620 AT2G35620 AT2G35620
fragaria_vesca	FvH4_5g24350 FvH4_5g24350 FvH4_5g24350 FvH4_5g24350
malus_domestica	MD00G1078500.v1.1 MD06G1021300.v1.1 MD16G1288500.v1.1
prunus_persica	Prupe.5G017300_v2.0.a1
pyrus_communis	pycom06g01550 pycom16g25580
rosa_chinensis	RchiOBHm_Chr7g0214561
rosa_laevigata	RLG00000002732
rosa_multiflora	Rmu_co8061150.1_g000001 Rmu_sc0003490.1_g000001 Rmu_sc0003490.1_g000002
rosa_roxburghii	Rroxscaffold_3G00245210
rosa_rugosa	Rorug07G0146900
rosa_samantha	Rh7AG282000 Rh7BG273800 Rh7CG301300 Rh7DG286000
rosa_wichuraiana	Rw7G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	314, 348
AfaI	GTAC	1 cut(s)	220
AfeI	AGCGCT	1 cut(s)	5
AgsI	TTSAA	3 cut(s)	177, 301, 433
AjuI	GAANNNNNNNTTGG	2 cut(s)	176, 208
AluBI	AGCT	3 cut(s)	225, 309, 427
AluI	AGCT	3 cut(s)	225, 309, 427
Alw26I	GTCTC	1 cut(s)	163
Aor51HI	AGCGCT	1 cut(s)	5
ApeKI	GCWGC	1 cut(s)	6
ApoI	RAATTY	2 cut(s)	314, 348
Asp700I	GAANNNNTTC	1 cut(s)	428
AspLEI	GCGC	1 cut(s)	6
BccI	CCATC	1 cut(s)	232
BciVI	GTATCC	1 cut(s)	352
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	1 cut(s)	310
BfoI	RGCGCY	1 cut(s)	7
BfuI	GTATCC	1 cut(s)	352
BisI	GCNGC	1 cut(s)	7
BlsI	GCNGC	1 cut(s)	8
BmsI	GCATC	2 cut(s)	115, 342
BsaBI	GATNNNNATC	1 cut(s)	242
Bse3DI	GCAATG	2 cut(s)	92, 236
Bse8I	GATNNNNATC	1 cut(s)	242
BseGI	GGATG	2 cut(s)	96, 240
BseJI	GATNNNNATC	1 cut(s)	242
BseMI	GCAATG	2 cut(s)	92, 236
BsmAI	GTCTC	1 cut(s)	163
Bsp1407I	TGTACA	1 cut(s)	218
Bsp143I	GATC	2 cut(s)	288, 389
BspQI	GCTCTTC	1 cut(s)	434
BsrDI	GCAATG	2 cut(s)	92, 236
BsrGI	TGTACA	1 cut(s)	218
BssMI	GATC	2 cut(s)	288, 389
Bst4CI	ACNGT	2 cut(s)	73, 216
Bst6I	CTCTTC	2 cut(s)	147, 434
BstAUI	TGTACA	1 cut(s)	218
BstC8I	GCNNGC	1 cut(s)	227
BstDEI	CTNAG	1 cut(s)	342
BstF5I	GGATG	2 cut(s)	96, 240
BstH2I	RGCGCY	1 cut(s)	7
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	2 cut(s)	291, 392
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	2 cut(s)	288, 389
BsuI	GTATCC	1 cut(s)	352
BtgZI	GCGATG	1 cut(s)	319
BtsCI	GGATG	2 cut(s)	96, 240
BtsIMutI	CAGTG	1 cut(s)	221
Cac8I	GCNNGC	1 cut(s)	227
CfoI	GCGC	1 cut(s)	6
Csp6I	GTAC	1 cut(s)	219
CviAII	CATG	2 cut(s)	24, 124
CviJI	RGCY	6 cut(s)	19, 225, 284, 309, 416, 427
CviKI_1	RGCY	6 cut(s)	19, 225, 284, 309, 416, 427
CviQI	GTAC	1 cut(s)	219
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	2 cut(s)	290, 391
DpnII	GATC	2 cut(s)	288, 389
Eam1104I	CTCTTC	2 cut(s)	147, 434
EarI	CTCTTC	2 cut(s)	147, 434
Eco47III	AGCGCT	1 cut(s)	5
FaeI	CATG	2 cut(s)	27, 127
FaiI	YATR	9 cut(s)	25, 50, 118, 125, 138, 190, 328, 395, 437
FatI	CATG	2 cut(s)	23, 123
Fnu4HI	GCNGC	1 cut(s)	7
FokI	GGATG	2 cut(s)	103, 247
Fsp4HI	GCNGC	1 cut(s)	7
FspBI	CTAG	1 cut(s)	310
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	7
HaeII	RGCGCY	1 cut(s)	7
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	2 cut(s)	27, 127
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HindIII	AAGCTT	1 cut(s)	223
Hpy166II	GTNNAC	2 cut(s)	64, 219
Hpy188I	TCNGA	1 cut(s)	97
Hpy8I	GTNNAC	2 cut(s)	64, 219
HpyAV	CCTTC	1 cut(s)	94
HpyCH4III	ACNGT	2 cut(s)	73, 216
HpyCH4V	TGCA	5 cut(s)	85, 106, 229, 253, 365
HpyF3I	CTNAG	1 cut(s)	342
Hsp92II	CATG	2 cut(s)	27, 127
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	2 cut(s)	288, 389
LguI	GCTCTTC	1 cut(s)	434
LmnI	GCTCC	1 cut(s)	306
LpnPI	CCDG	2 cut(s)	18, 392
LweI	GCATC	2 cut(s)	115, 342
MaeI	CTAG	1 cut(s)	310
MalI	GATC	2 cut(s)	290, 391
MboI	GATC	2 cut(s)	288, 389
MboII	GAAGA	2 cut(s)	134, 421
MfeI	CAATTG	1 cut(s)	110
MluCI	AATT	7 cut(s)	110, 163, 191, 263, 314, 348, 366
MnlI	CCTC	4 cut(s)	174, 273, 347, 427
MroXI	GAANNNNTTC	1 cut(s)	428
MseI	TTAA	1 cut(s)	158
MunI	CAATTG	1 cut(s)	110
NdeII	GATC	2 cut(s)	288, 389
NlaIII	CATG	2 cut(s)	27, 127
PciSI	GCTCTTC	1 cut(s)	434
PdmI	GAANNNNTTC	1 cut(s)	428
PkrI	GCNGC	1 cut(s)	8
RsaI	GTAC	1 cut(s)	220
RsaNI	GTAC	1 cut(s)	219
SapI	GCTCTTC	1 cut(s)	434
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	1 cut(s)	7
Sau3AI	GATC	2 cut(s)	288, 389
SetI	ASST	5 cut(s)	81, 105, 227, 311, 429
SfaNI	GCATC	2 cut(s)	115, 342
Sse9I	AATT	7 cut(s)	110, 163, 191, 263, 314, 348, 366
SspMI	CTAG	1 cut(s)	310
TaaI	ACNGT	2 cut(s)	73, 216
TaqI	TCGA	1 cut(s)	419
TasI	AATT	7 cut(s)	110, 163, 191, 263, 314, 348, 366
TatI	WGTACW	1 cut(s)	218
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TscAI	CASTG	1 cut(s)	221
TseI	GCWGC	1 cut(s)	6
TspDTI	ATGAA	3 cut(s)	112, 289, 437
TspRI	CASTG	1 cut(s)	221
XapI	RAATTY	2 cut(s)	314, 348
XmnI	GAANNNNTTC	1 cut(s)	428
XspI	CTAG	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.