Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005304

Physical Location & Seq

Genomic Coordinates Forward (+)

11587436 .. 11592932

Gene Structure 5497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0146900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4470 bp

ATGGCGGAAGGTTACTGGACCTTGTTCTGTGATTGTTCAACTGAGTCTGGAATTGAATGCAGTTCTGACATTGCAGCCATTATCAATCCAGATTCATGTATCAACAATATTGCGGTCATTGCAGTTGATATCTTGCTTCTATTCATCTTGTTTTGTATCTTCATCTATAGAACATTATCAAAGAAGGTTATAGCATCATCAGAGTCTTACACCTTCTCTGCTGTGTCAGTTGTTTCGGCCACTTTCAATGCCTGTTTGTCTTTGGCCTATTTGGGTTTTGGGATATGGAAAATGGTCGAGAAAGTAAACACAGATCAGACTTTTTTACCTCTGCATGGATGGCTAGTGTTTTTCTTTCAGGGGTTTACTTGGTTTATGCTGGGATTAACCATAAACCTAAAGAAGCCACACCCTCCCCACATTGCAATAACAAAAGTTCTTTCAATTCTTGGCTTTTTTATTGCAGTTTTTCTTTGTGGTTCATCAATTTGGGAAGCTATTCTTGATGAAGCAGTATCGGTTATGATTGTTTTGAACATTCTTTGTTTCCCTGGATCAGTTCTCTTGCTTTTTAGTGCATTTGAGGGATGCAATGTTGCTAAAGGTGATCCACAAGTCCATGTTGACAATGCTCTGGACACACCTCTGCTGGGTGCAAAATCGGATATCGCAGGTGAAATTACTTCAAATCATGACAATGTTACTCCTTTTGCAAAAGCTGGTTTATTTAGTAGAGTGTCATTTTGGTGGTTGAATCCATTACTGAAAAAAGGAAAGGGGAAGATTCTTGAGAATGAAGATATCCCACAGCTGAGAGAAGCTGATCAAGCACGAACATTGTACTTGATGTTTAAGGAGCAAGTGCAGAAAAGGAAGGAAAACATTTCATCTGATGATGAACCTTCTATTTTGTCCACAATTTTTTTCTGCCAGAGGAAAGCTATTCTGATTTCTGGTATCTTTGCACTCATCAAGGTTCTCACACTGACCAGCGGTCCACTGTTTCTGAGGGCCTTCATTAGGGTTGTTGGAGGAGAAGCAGCTTTTGAAGGTGAAGGCTATGCCCTGACTGCTGGTCTCTTTGTGGTTAAAGTCGTGGAGTCATTGTCGGAGAGGCAATGGTTCTTCAGAACTAGACTTATTGGTCTCCAGGTAAGATCATTGATATCAGCAGCAATATATCAGAAGCAACTAAGACTCTCAAATGCTGCCAAGATGACTCATTCTCCTGGTGAGATAGTGAATTATGTGAGCGTGGATGCTTATAGAATCGGTGAATTTCCATTCTGGTTTCATCAGATATGGTCCACAAGTCTTCAGTTGCTTCTTTCATTACTTATCTTTTACTACTGCGTGGGGATAGCAACTCTTGCAGCTATAACTGTAATCATAGTGACTCTGCTGGGAAGCTCTCCATTAGCAAAGTTGCAGCATGAGTATCAAACTAAGCTCATGGTAGCACAGAACAAGAGGCTGAAAGCCATTACAGAAGCGCTTTCCAATATGAAGATTTTGAAGCTGTATTCTTGGGAGACGAATTTCAAGAAGGTCATAGAAGGGTTGAGAACAGAAGAACTCAAATGGATAGCTAAAGTACTGTCACAAAAGGGATATTACAATGTTCTATTCTGGTCATCTCCTATTGTGGTAGCAGCTGTCACTTTTTGGACATGCTACTTCCTGGGATTTACACTCTCTGCTAGTAGTGCTTTCACATTTCTAGCAACTTTACGTATTGTTCAGGAGCCAATCAAGCTGATCCCGGATGTTTTTGGAGCATTTATCGAAGCCAAGGTTTCATTCTCTCGGATCGTGAAGTTCCTTGATGCACCAGAGTTGGAGCACAGAGATACAAGGAAAGAGAGCAGTGAAAAAGAGGTTGAGCATTCCATTTTGTTTAAATCCTTTGAAATTTCATGGGATACTGATGCTACAAAGGCCACATTGAGGGACATCAATTTGGTGGTAAAACCAGGAGAAAAAGTTGCTATTTGTGGTGAGGTTGGCTCAGGAAAATCAACCCTTTTAGCTGCAATTCTCGGTGAAGTTCCACGGATCAATGGTGTTGTTGAAGTATACGGCACAATAGCATATGTATCTCAGTCTGCATGGATCCAAACAGGAACTATACAAGAAAATATACTATTTGGGACTCCCATGGATCATGTAAGATATCAAGAAACACTTCAAAAGTGTTCCTTGGTAAAGGACCTTGATATGCTTCCATTTGGGGATCGCACTCAGATAGGAGAAAGAGGTGTCAATCTAAGTGGCGGCCAGAAGCAGCGGATTCAACTTGCACGTGCACTCTATCAAAATGCTGATGTCTACCTCTTAGATGACCCTTTCAGTGCAGTTGATGCCCACACTGCGACCAGCCTGTTCAATGAATATGTCATGGGAGCTCTGGCTGAGAAGACAGTTCTGCTTGTCACACACCAAGTTGACTTCCTTCCTGCTTTTCATTCAATCTTGTTGATGTCGTCGGGGGAAATTTTAAAAGCAGCGCCTTATGATGAGTTGCTAGCTTCTTGTCATGAGTTCCAAGACCTTGTGAATGCAAACAATGACACTGCTGGTTCAGAGAGGCCAAATGAAAATGCTTCTACAGAAAAACTTAAATCATCTGCAAAGGAGATTGAGAAAGTAACCACTGAGGTACAGCTACAAGAGTCTGCAGGGGATCAATTGATTAAGAGAGAAGAGAGAGAAACAGGGGACATTGGTTTCAAGCCATACATTCAGTATTTGAAGCAGGGCAGGGGATTTTTCAACTTCTCCTTGTCAATTTTTCTCTACTCGATGTTTATAGTTGGGCAGTTACTTCAGTTTTATTGGTTGGCTTTGAACATTCAGGATTATAGTGTATCCAGAGTCAAACTCTATGCAGTTTATTCTGTGATCATGACTGTCATGATAGTCTCTTTGCTCATTCGATCTTTCTTTATAGTAGATTTAGGAGTTGGGGCAGGAAAGTCCATTTTTTCGACACTACTGAACTCTCTTTTCCGAGCACCAATGTTGTTTTATGACTCAACACCTGTGGGAAGAATACTTAGTCGGGTGTCGTCGGATATGAATATCATTGACCTTGAAGTAGCTTTCAAGTTGATAATTGCTGTTGGGGGAACCTTGAACACATACAGCATATTTCTAGTACTGGTTTATCTTACTTGGCCGATGGTGTTTCTAGTTGTCCCCACAATCTATATTACTATGCTCTTTCAGAACTACTACATGGCTTCTGCAAAAGAGTTGATGCGAATGAATGGCACAACTAAGTCTGCACTTGCAAGCCAGCTTGCCGAATCTATTGCTGGAGCCCTGACAATCAGAGCTTTCAGACAGGAGGACAGATTCTTCACAAAATACTTGGACTTTATCGATGCAAATGCTAGCACTGATTTCCATGGTTTTTCCACAAATGAGTGGTTGATCGAACGCCTGGAATTGCTATGTGCTATTGTTCTCTCAGCTGCAGCACTTGCCATTACTTTAACTCCATATTCCTCTTCTTCCTCTGGGTTTATTGGGATGACACTGTCATATGGTCTCTCCTTAAATGTTTTCCTCGTAATTTCTGTCAAATTTCAGTGCATGCTAGCAAATTCAATCATTTCTGTAGAAAGGGTAGAGCAATACATGCATATTCCAAGTGAAGCCGCAGAAGTTATAGAAGACAACCGACCGATGCAAAATTGGCCTACTGTTGGTAAAGTGGAAATACATGATTTAAAGGTTAGATATAGGCCAAATGCTCCTCTCGTTCTTCGTGGGATAACTTGCACAATTGAAGGAGGGTACAAAGTTGGAATTGTTGGCCGGACTGGAAGTGGAAAGACAACTCTTATCAGTGTTTTGTTTCGACTTGTAGAGCCTACAGAGGGAAAGGTCATTGTAGATGGTTATGACATTTGCACAATTGGACTTCATGACTTAAGATCATGTTTTGGGATCATCCCTCAAGATCCCACTCTATTCAGTGGGTCTGTGAGGTTCAATCTTGACCCCTTATCGAAGCATACTGATCATGAGATATGGCAGGTGCTTGAGAAATGTCAGTTACGAGAGGCCATTCAAGAAAAAGCAGAGGGCCTGGATTCTTTAGTTGTACAAGATGGAACAAACTGGAGCATGGGACAGCGACAACTGTTCTGTTTGGGGCGCGCTTTGTTAAAGAGGAGCCGAATACTAGTGCTCGATGAAGCTACTGCATCAATGGACAATGCAACAGATTCTATTCTCCAGAAAACTATAAGAACAGAATTTGCTGACTGCACTGTAATAACAGTGGCACATAGGATACCGACTGTCATGGACTGCACCAAGGTGCTTGCTATTGCTGATGGTAAACTGGTAGAGTATGATGAGCCAACAAAGCTGATGAACAATGAGGGATCATTATTTGGGCAGCTTGTCAAGGAATACTGGTCTCGTTCTGCCAATGTCGGCATCCACTCTGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009664 GO:0009791 GO:0009826 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0022414 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044237 GO:0044249 GO:0044464 GO:0045229 GO:0048316 GO:0048354 GO:0048359 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

1489

Amino Acids

166.02

Weight (kDa)

5.92

Isoelectric Point (pI)

31.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABCC10_N	PF24358	3 - 198	1.4e-69	ABCC10 N-terminal domain
ABC_membrane	PF00664	315 - 583	2.4e-24	ABC transporter transmembrane region
ABC_tran	PF00005	649 - 783	4.6e-22	ABC transporter
ABC_membrane	PF00664	929 - 1176	3.4e-25	ABC transporter transmembrane region
ABC_tran	PF00005	1257 - 1405	2.6e-24	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31420 AT1G31420 AT1G31420 AT2G35620 AT2G35620 AT2G35620 AT2G35620
fragaria_vesca	FvH4_5g24350 FvH4_5g24350 FvH4_5g24350 FvH4_5g24350
malus_domestica	MD00G1078500.v1.1 MD06G1021300.v1.1 MD16G1288500.v1.1
prunus_persica	Prupe.5G017300_v2.0.a1
pyrus_communis	pycom06g01550 pycom16g25580
rosa_chinensis	RchiOBHm_Chr7g0214561
rosa_laevigata	RLG00000002732
rosa_multiflora	Rmu_co8061150.1_g000001 Rmu_sc0003490.1_g000001 Rmu_sc0003490.1_g000002
rosa_roxburghii	Rroxscaffold_3G00245210
rosa_rugosa	Rorug07G0146900
rosa_samantha	Rh7AG282000 Rh7BG273800 Rh7CG301300 Rh7DG286000
rosa_wichuraiana	Rw7G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	662, 4033
AasI	GACNNNNNNGTC	1 cut(s)	1143
Acc36I	ACCTGC	2 cut(s)	662, 4033
AccI	GTMKAC	2 cut(s)	2076, 2328
AccII	CGCG	1 cut(s)	4167
AciI	CCGC	6 cut(s)	5, 113, 993, 2274, 2287, 3663
AcoI	YGGCCR	4 cut(s)	237, 2275, 3176, 3820
AcsI	RAATTY	7 cut(s)	1277, 1537, 1911, 2493, 3587, 3607, 4265
AcuI	CTGAAG	3 cut(s)	1111, 1301, 2810
AcvI	CACGTG	1 cut(s)	2303
AfaI	GTAC	6 cut(s)	842, 1596, 2661, 3159, 3803, 4113
AfeI	AGCGCT	1 cut(s)	1494
AfiI	CCNNNNNNNGG	6 cut(s)	335, 650, 1020, 1947, 3710, 3884
AflII	CTTAAG	1 cut(s)	3937
AhdI	GACNNNNNGTC	2 cut(s)	993, 1074
AhlI	ACTAGT	1 cut(s)	4192
AjnI	CCWGG	7 cut(s)	550, 1149, 1228, 1680, 1972, 3444, 4095
AjuI	GAANNNNNNNTTGG	2 cut(s)	1784, 1816
AleI	CACNNNNGTG	1 cut(s)	4328
Alw21I	GWGCWC	5 cut(s)	1845, 2308, 2407, 3016, 4200
Alw26I	GTCTC	6 cut(s)	1082, 1151, 1526, 2926, 3557, 4437
Alw44I	GTGCAC	1 cut(s)	2304
Aor51HI	AGCGCT	1 cut(s)	1494
ApaLI	GTGCAC	1 cut(s)	2304
ApoI	RAATTY	7 cut(s)	1277, 1537, 1911, 2493, 3587, 3607, 4265
Asp700I	GAANNNNTTC	2 cut(s)	498, 2184
AspLEI	GCGC	4 cut(s)	1495, 2509, 4167, 4169
AspS9I	GGNCC	6 cut(s)	18, 995, 1011, 1305, 2209, 4093
AsuC2I	CCSGG	1 cut(s)	1763
AsuHPI	GGTGA	7 cut(s)	617, 686, 1064, 1244, 1286, 2009, 2054
AsuNHI	GCTAGC	3 cut(s)	2524, 3395, 3601
AvaII	GGWCC	4 cut(s)	18, 995, 1305, 2209
BaeGI	GKGCMC	1 cut(s)	2308
BamHI	GGATCC	1 cut(s)	2112
BanII	GRGCYC	2 cut(s)	2407, 3325
BbrPI	CACGTG	1 cut(s)	2303
BbsI	GAAGAC	3 cut(s)	1307, 2423, 3684
Bbv12I	GWGCWC	5 cut(s)	1845, 2308, 2407, 3016, 4200
BccI	CCATC	5 cut(s)	333, 3175, 3896, 4112, 4340
BceAI	ACGGC	1 cut(s)	2095
BcgI	CGANNNNNNTGC	4 cut(s)	3296, 3330, 3374, 3408
BciT130I	CCWGG	7 cut(s)	552, 1151, 1230, 1682, 1974, 3446, 4097
BciVI	GTATCC	3 cut(s)	1915, 2878, 4296
BclI	TGATCA	3 cut(s)	823, 2901, 4027
BcnI	CCSGG	1 cut(s)	1763
BcoDI	GTCTC	6 cut(s)	1082, 1151, 1526, 2926, 3557, 4437
BcuI	ACTAGT	1 cut(s)	4192
BfmI	CTRYAG	6 cut(s)	166, 2607, 2676, 3477, 3621, 3879
BfoI	RGCGCY	2 cut(s)	1496, 2510
BfrI	CTTAAG	1 cut(s)	3937
BfuAI	ACCTGC	2 cut(s)	662, 4033
BfuI	GTATCC	3 cut(s)	1915, 2878, 4296
BmcAI	AGTACT	2 cut(s)	1596, 3159
Bme1390I	CCNGG	8 cut(s)	552, 1151, 1230, 1682, 1763, 1974, 3446, 4097
Bme18I	GGWCC	4 cut(s)	18, 995, 1305, 2209
BmeRI	GACNNNNNGTC	2 cut(s)	993, 1074
BmgT120I	GGNCC	6 cut(s)	18, 995, 1011, 1305, 2209, 4093
BmiI	GGNNCC	5 cut(s)	1746, 2114, 3130, 3322, 4184
BmrFI	CCNGG	8 cut(s)	552, 1151, 1230, 1682, 1763, 1974, 3446, 4097
BmtI	GCTAGC	3 cut(s)	2528, 3399, 3605
BpiI	GAAGAC	3 cut(s)	1307, 2423, 3684
BplI	GAGNNNNNCTC	4 cut(s)	1991, 2023, 2865, 2897
BpmI	CTGGAG	4 cut(s)	1133, 3339, 4150, 4229
Bpu10I	CCTNAGC	1 cut(s)	2008
BpuEI	CTTGAG	3 cut(s)	809, 3948, 4070
BpuMI	CCSGG	1 cut(s)	1763
Bsa29I	ATCGAT	1 cut(s)	3384
BsaAI	YACGTR	2 cut(s)	1733, 2303
BsaI	GGTCTC	4 cut(s)	1082, 1151, 3557, 4437
BsaJI	CCNNGG	8 cut(s)	550, 1681, 1791, 2051, 2157, 2199, 3409, 4326
BsaXI	ACNNNNNCTCC	8 cut(s)	1091, 1121, 1210, 1240, 1968, 1998, 3484, 3514
Bsc4I	CCNNNNNNNGG	6 cut(s)	335, 650, 1020, 1947, 3710, 3884
Bse1I	ACTGG	6 cut(s)	20, 3165, 3832, 4133, 4359, 4433
Bse3DI	GCAATG	5 cut(s)	69, 117, 420, 598, 1124
BseBI	CCWGG	7 cut(s)	552, 1151, 1230, 1682, 1974, 3446, 4097
BseCI	ATCGAT	1 cut(s)	3384
BseDI	CCNNGG	8 cut(s)	550, 1681, 1791, 2051, 2157, 2199, 3409, 4326
BseGI	GGATG	7 cut(s)	344, 593, 1264, 1771, 3540, 3957, 4452
BseLI	CCNNNNNNNGG	6 cut(s)	335, 650, 1020, 1947, 3710, 3884
BseMI	GCAATG	5 cut(s)	69, 117, 420, 598, 1124
BseMII	CTCAG	9 cut(s)	33, 803, 998, 2022, 2114, 2255, 2403, 2646, 3486
BseNI	ACTGG	6 cut(s)	20, 3165, 3832, 4133, 4359, 4433
BsePI	GCGCGC	1 cut(s)	4165
BseRI	GAGGAG	3 cut(s)	1047, 3750, 4195
BseSI	GKGCMC	1 cut(s)	2308
BseYI	CCCAGC	3 cut(s)	379, 649, 1402
BsgI	GTGCAG	5 cut(s)	884, 2373, 3270, 4261, 4306
Bsh1236I	CGCG	1 cut(s)	4167
Bsh1285I	CGRYCG	1 cut(s)	3689
BshVI	ATCGAT	1 cut(s)	3384
BsiEI	CGRYCG	1 cut(s)	3689
BsiHKAI	GWGCWC	5 cut(s)	1845, 2308, 2407, 3016, 4200
BsiSI	CCGG	2 cut(s)	1763, 3823
BslFI	GGGAC	5 cut(s)	1964, 2164, 2732, 3182, 4152
BslI	CCNNNNNNNGG	6 cut(s)	335, 650, 1020, 1947, 3710, 3884
BsmAI	GTCTC	6 cut(s)	1082, 1151, 1526, 2926, 3557, 4437
BsmBI	CGTCTC	1 cut(s)	1526
BsmFI	GGGAC	5 cut(s)	1964, 2164, 2732, 3182, 4152
BsmI	GAATGC	3 cut(s)	62, 1885, 2563
Bso31I	GGTCTC	4 cut(s)	1082, 1151, 3557, 4437
Bsp1286I	GDGCHC	6 cut(s)	1845, 2308, 2407, 3016, 3325, 4200
Bsp1407I	TGTACA	1 cut(s)	4111
Bsp19I	CCATGG	2 cut(s)	2157, 3409
BspACI	CCGC	6 cut(s)	5, 113, 993, 2274, 2287, 3663
BspCNI	CTCAG	9 cut(s)	34, 804, 999, 2021, 2113, 2254, 2404, 2647, 3485
BspDI	ATCGAT	1 cut(s)	3384
BspFNI	CGCG	1 cut(s)	4167
BspHI	TCATGA	6 cut(s)	691, 2536, 2904, 2913, 3931, 4030
BspLI	GGNNCC	5 cut(s)	1746, 2114, 3130, 3322, 4184
BspMAI	CTGCAG	2 cut(s)	2680, 3481
BspMI	ACCTGC	2 cut(s)	662, 4033
BspOI	GCTAGC	3 cut(s)	2528, 3399, 3605
BspTI	CTTAAG	1 cut(s)	3937
BspTNI	GGTCTC	4 cut(s)	1082, 1151, 3557, 4437
BsrDI	GCAATG	5 cut(s)	69, 117, 420, 598, 1124
BsrGI	TGTACA	1 cut(s)	4111
BsrI	ACTGG	6 cut(s)	20, 3165, 3832, 4133, 4359, 4433
BssECI	CCNNGG	8 cut(s)	550, 1681, 1791, 2051, 2157, 2199, 3409, 4326
BssHII	GCGCGC	1 cut(s)	4165
BssNAI	GTATAC	1 cut(s)	2077
BssT1I	CCWWGG	5 cut(s)	1791, 2157, 2199, 3409, 4326
Bst1107I	GTATAC	1 cut(s)	2077
Bst2UI	CCWGG	7 cut(s)	552, 1151, 1230, 1682, 1974, 3446, 4097
Bst6I	CTCTTC	2 cut(s)	2697, 3517
BstAFI	CTTAAG	1 cut(s)	3937
BstAPI	GCANNNNNTGC	4 cut(s)	1370, 2360, 3485, 3643
BstAUI	TGTACA	1 cut(s)	4111
BstBAI	YACGTR	2 cut(s)	1733, 2303
BstC8I	GCNNGC	9 cut(s)	2526, 3295, 3299, 3303, 3397, 3599, 3603, 4167, 4335
BstDSI	CCRYGG	3 cut(s)	2051, 2157, 3409
BstENI	CCTNNNNNAGG	1 cut(s)	1018
BstF5I	GGATG	7 cut(s)	344, 593, 1264, 1771, 3540, 3957, 4452
BstFNI	CGCG	1 cut(s)	4167
BstH2I	RGCGCY	2 cut(s)	1496, 2510
BstHHI	GCGC	4 cut(s)	1495, 2509, 4167, 4169
BstMAI	GTCTC	6 cut(s)	1082, 1151, 1526, 2926, 3557, 4437
BstMCI	CGRYCG	1 cut(s)	3689
BstNI	CCWGG	7 cut(s)	552, 1151, 1230, 1682, 1974, 3446, 4097
BstNSI	RCATGY	3 cut(s)	1674, 3601, 3646
BstSCI	CCNGG	8 cut(s)	550, 1149, 1228, 1680, 1761, 1972, 3444, 4095
BstSFI	CTRYAG	6 cut(s)	166, 2607, 2676, 3477, 3621, 3879
BstSLI	GKGCMC	1 cut(s)	2308
BstSNI	TACGTA	1 cut(s)	1733
BstUI	CGCG	1 cut(s)	4167
BstV2I	GAAGAC	3 cut(s)	1307, 2423, 3684
BstX2I	RGATCY	2 cut(s)	2112, 3967
BstYI	RGATCY	2 cut(s)	2112, 3967
BstZ17I	GTATAC	1 cut(s)	2077
Bsu15I	ATCGAT	1 cut(s)	3384
BsuI	GTATCC	3 cut(s)	1915, 2878, 4296
BsuTUI	ATCGAT	1 cut(s)	3384
BtgI	CCRYGG	3 cut(s)	2051, 2157, 3409
BtsCI	GGATG	7 cut(s)	344, 593, 1264, 1771, 3540, 3957, 4452
BtsI	GCAGTG	3 cut(s)	1873, 2367, 2571
BveI	ACCTGC	2 cut(s)	662, 4033
Cac8I	GCNNGC	9 cut(s)	2526, 3295, 3299, 3303, 3397, 3599, 3603, 4167, 4335
CciI	TCATGA	6 cut(s)	691, 2536, 2904, 2913, 3931, 4030
CfoI	GCGC	4 cut(s)	1495, 2509, 4167, 4169
Cfr13I	GGNCC	6 cut(s)	18, 995, 1011, 1305, 2209, 4093
ClaI	ATCGAT	1 cut(s)	3384
Csp6I	GTAC	6 cut(s)	841, 1595, 2660, 3158, 3802, 4112
CspCI	CAANNNNNGTGG	4 cut(s)	2251, 2286, 3024, 3059
CviQI	GTAC	6 cut(s)	841, 1595, 2660, 3158, 3802, 4112
DraI	TTTAAA	3 cut(s)	1900, 2499, 3735
DrdI	GACNNNNNNGTC	1 cut(s)	1143
DriI	GACNNNNNGTC	2 cut(s)	993, 1074
DseDI	GACNNNNNNGTC	1 cut(s)	1143
EaeI	YGGCCR	4 cut(s)	237, 2275, 3176, 3820
Eam1104I	CTCTTC	2 cut(s)	2697, 3517
Eam1105I	GACNNNNNGTC	2 cut(s)	993, 1074
EarI	CTCTTC	2 cut(s)	2697, 3517
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	2405
Eco105I	TACGTA	1 cut(s)	1733
Eco130I	CCWWGG	5 cut(s)	1791, 2157, 2199, 3409, 4326
Eco24I	GRGCYC	2 cut(s)	2407, 3325
Eco31I	GGTCTC	4 cut(s)	1082, 1151, 3557, 4437
Eco32I	GATATC	5 cut(s)	130, 667, 802, 1167, 2174
Eco47I	GGWCC	4 cut(s)	18, 995, 1305, 2209
Eco47III	AGCGCT	1 cut(s)	1494
Eco53kI	GAGCTC	1 cut(s)	2405
Eco57I	CTGAAG	3 cut(s)	1111, 1301, 2810
Eco72I	CACGTG	1 cut(s)	2303
EcoICRI	GAGCTC	1 cut(s)	2405
EcoNI	CCTNNNNNAGG	1 cut(s)	1018
EcoO109I	RGGNCCY	3 cut(s)	1011, 2209, 4093
EcoRII	CCWGG	7 cut(s)	550, 1149, 1228, 1680, 1972, 3444, 4095
EcoRV	GATATC	5 cut(s)	130, 667, 802, 1167, 2174
EcoT14I	CCWWGG	5 cut(s)	1791, 2157, 2199, 3409, 4326
EcoT22I	ATGCAT	1 cut(s)	3648
EcoT38I	GRGCYC	2 cut(s)	2407, 3325
ErhI	CCWWGG	5 cut(s)	1791, 2157, 2199, 3409, 4326
Esp3I	CGTCTC	1 cut(s)	1526
FalI	AAGNNNNNCTT	6 cut(s)	486, 518, 2169, 2201, 2183, 2215
FaqI	GGGAC	5 cut(s)	1964, 2164, 2732, 3182, 4152
FauNDI	CATATG	2 cut(s)	2092, 3547
FbaI	TGATCA	3 cut(s)	823, 2901, 4027
FblI	GTMKAC	2 cut(s)	2076, 2328
FokI	GGATG	7 cut(s)	351, 600, 1271, 1778, 3547, 3944, 4439
FriOI	GRGCYC	2 cut(s)	2407, 3325
GlaI	GCGC	4 cut(s)	1494, 2508, 4166, 4168
GsaI	CCCAGC	3 cut(s)	383, 653, 1406
GsuI	CTGGAG	4 cut(s)	1133, 3339, 4150, 4229
HaeII	RGCGCY	2 cut(s)	1496, 2510
HapII	CCGG	2 cut(s)	1763, 3823
HhaI	GCGC	4 cut(s)	1495, 2509, 4167, 4169
Hin6I	GCGC	4 cut(s)	1493, 2507, 4165, 4167
HinP1I	GCGC	4 cut(s)	1493, 2507, 4165, 4167
HincII	GTYRAC	2 cut(s)	625, 2446
HindII	GTYRAC	2 cut(s)	625, 2446
HpaII	CCGG	2 cut(s)	1763, 3823
HphI	GGTGA	7 cut(s)	617, 686, 1064, 1244, 1286, 2009, 2054
Hpy99I	CGWCG	2 cut(s)	2488, 3073
HpyCH4IV	ACGT	2 cut(s)	1732, 2302
HpySE526I	ACGT	2 cut(s)	1732, 2302
HspAI	GCGC	4 cut(s)	1493, 2507, 4165, 4167
Ksp22I	TGATCA	3 cut(s)	823, 2901, 4027
LmnI	GCTCC	9 cut(s)	856, 1744, 1775, 1840, 2402, 3320, 3763, 4131, 4182
MaeII	ACGT	2 cut(s)	1732, 2302
MaeIII	GTNAC	9 cut(s)	11, 700, 1393, 1599, 1657, 2431, 2647, 2820, 4062
MfeI	CAATTG	3 cut(s)	2687, 3789, 3921
MflI	RGATCY	2 cut(s)	2112, 3967
MhlI	GDGCHC	6 cut(s)	1845, 2308, 2407, 3016, 3325, 4200
MmeI	TCCRAC	5 cut(s)	1009, 1089, 1818, 3051, 3790
Mph1103I	ATGCAT	1 cut(s)	3648
MroXI	GAANNNNTTC	2 cut(s)	498, 2184
MslI	CAYNNNNRTG	3 cut(s)	696, 745, 4328
MspA1I	CMGCKG	5 cut(s)	811, 993, 1655, 2287, 3476
MspCI	CTTAAG	1 cut(s)	3937
MspI	CCGG	2 cut(s)	1763, 3823
MspR9I	CCNGG	8 cut(s)	552, 1151, 1230, 1682, 1763, 1974, 3446, 4097
MunI	CAATTG	3 cut(s)	2687, 3789, 3921
Mva1269I	GAATGC	3 cut(s)	62, 1885, 2563
MvaI	CCWGG	7 cut(s)	552, 1151, 1230, 1682, 1974, 3446, 4097
MvnI	CGCG	1 cut(s)	4167
NciI	CCSGG	1 cut(s)	1763
NcoI	CCATGG	2 cut(s)	2157, 3409
NdeI	CATATG	2 cut(s)	2092, 3547
NheI	GCTAGC	3 cut(s)	2524, 3395, 3601
NlaIV	GGNNCC	5 cut(s)	1746, 2114, 3130, 3322, 4184
NmuCI	GTSAC	4 cut(s)	1393, 1599, 1657, 2431
NsiI	ATGCAT	1 cut(s)	3648
NspI	RCATGY	3 cut(s)	1674, 3601, 3646
OliI	CACNNNNGTG	1 cut(s)	4328
PaeI	GCATGC	1 cut(s)	3601
PagI	TCATGA	6 cut(s)	691, 2536, 2904, 2913, 3931, 4030
PaqCI	CACCTGC	2 cut(s)	662, 4033
PauI	GCGCGC	1 cut(s)	4165
PctI	GAATGC	3 cut(s)	62, 1885, 2563
PdmI	GAANNNNTTC	2 cut(s)	498, 2184
PfeI	GAWTC	9 cut(s)	92, 754, 784, 1269, 2290, 3308, 3357, 4100, 4235
PflFI	GACNNNGTC	1 cut(s)	3541
PfoI	TCCNGGA	1 cut(s)	1761
PmaCI	CACGTG	1 cut(s)	2303
PmlI	CACGTG	1 cut(s)	2303
Ppu21I	YACGTR	2 cut(s)	1733, 2303
PpuMI	RGGWCCY	1 cut(s)	2209
Psp124BI	GAGCTC	1 cut(s)	2407
Psp5II	RGGWCCY	1 cut(s)	2209
Psp6I	CCWGG	7 cut(s)	550, 1149, 1228, 1680, 1972, 3444, 4095
PspCI	CACGTG	1 cut(s)	2303
PspFI	CCCAGC	3 cut(s)	379, 649, 1402
PspGI	CCWGG	7 cut(s)	550, 1149, 1228, 1680, 1972, 3444, 4095
PspN4I	GGNNCC	5 cut(s)	1746, 2114, 3130, 3322, 4184
PspPI	GGNCC	6 cut(s)	18, 995, 1011, 1305, 2209, 4093
PspPPI	RGGWCCY	1 cut(s)	2209
PstI	CTGCAG	2 cut(s)	2680, 3481
PsuI	RGATCY	2 cut(s)	2112, 3967
PsyI	GACNNNGTC	1 cut(s)	3541
PteI	GCGCGC	1 cut(s)	4165
PvuII	CAGCTG	3 cut(s)	811, 1655, 3476
RsaI	GTAC	6 cut(s)	842, 1596, 2661, 3159, 3803, 4113
RsaNI	GTAC	6 cut(s)	841, 1595, 2660, 3158, 3802, 4112
RseI	CAYNNNNRTG	3 cut(s)	696, 745, 4328
SacI	GAGCTC	1 cut(s)	2407
Sau96I	GGNCC	6 cut(s)	18, 995, 1011, 1305, 2209, 4093
ScaI	AGTACT	2 cut(s)	1596, 3159
ScrFI	CCNGG	8 cut(s)	552, 1151, 1230, 1682, 1763, 1974, 3446, 4097
SduI	GDGCHC	6 cut(s)	1845, 2308, 2407, 3016, 3325, 4200
SfcI	CTRYAG	6 cut(s)	166, 2607, 2676, 3477, 3621, 3879
SinI	GGWCC	4 cut(s)	18, 995, 1305, 2209
SmiMI	CAYNNNNRTG	3 cut(s)	696, 745, 4328
SmlI	CTYRAG	4 cut(s)	788, 3937, 3963, 4049
SmoI	CTYRAG	4 cut(s)	788, 3937, 3963, 4049
SnaBI	TACGTA	1 cut(s)	1733
SpeI	ACTAGT	1 cut(s)	4192
SphI	GCATGC	1 cut(s)	3601
SsiI	CCGC	6 cut(s)	5, 113, 993, 2274, 2287, 3663
SspI	AATATT	1 cut(s)	109
SstI	GAGCTC	1 cut(s)	2407
StyD4I	CCNGG	8 cut(s)	550, 1149, 1228, 1680, 1761, 1972, 3444, 4095
StyI	CCWWGG	5 cut(s)	1791, 2157, 2199, 3409, 4326
TaiI	ACGT	2 cut(s)	1735, 2305
TaqII	GACCGA	1 cut(s)	3703
TatI	WGTACW	4 cut(s)	840, 1594, 3157, 4111
TauI	GCSGC	2 cut(s)	2277, 3665
TfiI	GAWTC	9 cut(s)	92, 754, 784, 1269, 2290, 3308, 3357, 4100, 4235
TseFI	GTSAC	4 cut(s)	1393, 1599, 1657, 2431
Tsp45I	GTSAC	4 cut(s)	1393, 1599, 1657, 2431
TspGWI	ACGGA	1 cut(s)	2068
Tth111I	GACNNNGTC	1 cut(s)	3541
Vha464I	CTTAAG	1 cut(s)	3937
VneI	GTGCAC	1 cut(s)	2304
VpaK11BI	GGWCC	4 cut(s)	18, 995, 1305, 2209
XagI	CCTNNNNNAGG	1 cut(s)	1018
XapI	RAATTY	7 cut(s)	1277, 1537, 1911, 2493, 3587, 3607, 4265
XceI	RCATGY	3 cut(s)	1674, 3601, 3646
XmiI	GTMKAC	2 cut(s)	2076, 2328
XmnI	GAANNNNTTC	2 cut(s)	498, 2184
ZrmI	AGTACT	2 cut(s)	1596, 3159
Zsp2I	ATGCAT	1 cut(s)	3648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.