Rmu_co8078508.1_g000001

Core-2/I-Branching enzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8078508.1
OG0016847
Physical Location & Seq
Reverse (-)
1 .. 551
551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8078508.1_g000001.1.cds

Sequence Viewer

Length: 505 bp
atggtgcaagcagagcgccgcctactagccaatgcactgctggacttgtccaaccaacgtttcattcttctctcggagtcgtgcataccactattcaacttcaaaacggtctatgattacgttatggactcaaccaaaacatttgtggaggcctacgacttgcccggtccagtgggccgagacagatataggaaacaaatgagcccaacaatcaagcttgagcaatggcggaaggggtcgcagtggttcgaggtggaccgccagttggcactggaggtggtttcggacagacggtattttccgctgtttgagaagtactgcgtcccctcgtgctactcggatgagcactacttgcctacttacatgagcatcaaattttggaagaaaaactcgaaccggactttgcattgggttgactggtcgagaggggggccacatccgtcgaggtatcagaggacggatgtgactcatgagttcttgagcaagatgagatttggaacaacat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Branch

Protein Analysis

168

Amino Acids

20.13

Weight (kDa)

9.26

Isoelectric Point (pI)

45.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016847)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11810
malus_domestica MD14G1228400.v1.1 MD14G1228500.v1.1
prunus_persica Prupe.5G223500_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0185791
rosa_laevigata RLG00000004883
rosa_multiflora Rmu_co8078508.1_g000001 Rmu_sc0002121.1_g000003
rosa_rugosa Rorug06G0471300
rosa_samantha Rh7AG071000 Rh7BG076800 Rh7CG076800 Rh7DG076700
rosa_wichuraiana Rw7G006400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 19, 229, 259, 302
AclI AACGTT 1 cut(s) 58
AcsI RAATTY 1 cut(s) 374
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 1 cut(s) 265
AgsI TTSAA 2 cut(s) 97, 103
AjuI GAANNNNNNNTTGG 4 cut(s) 44, 48, 76, 80
AluBI AGCT 1 cut(s) 217
AluI AGCT 1 cut(s) 217
Alw21I GWGCWC 1 cut(s) 348
Alw26I GTCTC 1 cut(s) 174
AoxI GGCC 3 cut(s) 150, 175, 431
ApoI RAATTY 1 cut(s) 374
AspLEI GCGC 1 cut(s) 18
AspS9I GGNCC 4 cut(s) 167, 175, 256, 431
AsuC2I CCSGG 1 cut(s) 165
AvaII GGWCC 2 cut(s) 167, 256
BanII GRGCYC 1 cut(s) 206
BauI CACGAG 1 cut(s) 328
Bbv12I GWGCWC 1 cut(s) 348
BcnI CCSGG 1 cut(s) 165
BcoDI GTCTC 1 cut(s) 174
BfaI CTAG 1 cut(s) 26
BfoI RGCGCY 1 cut(s) 19
BisI GCNGC 1 cut(s) 19
BlsI GCNGC 1 cut(s) 20
BmcAI AGTACT 1 cut(s) 317
Bme1390I CCNGG 1 cut(s) 165
Bme18I GGWCC 2 cut(s) 167, 256
BmgT120I GGNCC 4 cut(s) 167, 175, 256, 431
BmiI GGNNCC 1 cut(s) 432
BmrFI CCNGG 1 cut(s) 165
BmsI GCATC 1 cut(s) 378
BpmI CTGGAG 1 cut(s) 293
BpuEI CTTGAG 2 cut(s) 239, 499
BpuMI CCSGG 1 cut(s) 165
BsaWI WCCGGW 1 cut(s) 396
Bsc4I CCNNNNNNNGG 1 cut(s) 265
Bse1I ACTGG 4 cut(s) 170, 262, 276, 422
Bse3DI GCAATG 1 cut(s) 230
BseGI GGATG 3 cut(s) 346, 436, 466
BseLI CCNNNNNNNGG 1 cut(s) 265
BseMI GCAATG 1 cut(s) 230
BseNI ACTGG 4 cut(s) 170, 262, 276, 422
BshFI GGCC 3 cut(s) 152, 177, 433
BsiHKAI GWGCWC 1 cut(s) 348
BsiSI CCGG 2 cut(s) 165, 397
BslFI GGGAC 1 cut(s) 308
BslI CCNNNNNNNGG 1 cut(s) 265
BsmAI GTCTC 1 cut(s) 174
BsmFI GGGAC 1 cut(s) 308
BsnI GGCC 3 cut(s) 152, 177, 433
Bsp1286I GDGCHC 2 cut(s) 206, 348
BspACI CCGC 4 cut(s) 19, 229, 259, 302
BspANI GGCC 3 cut(s) 152, 177, 433
BspHI TCATGA 1 cut(s) 469
BspLI GGNNCC 1 cut(s) 432
BsrDI GCAATG 1 cut(s) 230
BsrI ACTGG 4 cut(s) 170, 262, 276, 422
BssSI CACGAG 1 cut(s) 328
Bst2BI CACGAG 1 cut(s) 328
Bst4CI ACNGT 2 cut(s) 109, 294
BstAPI GCANNNNNTGC 1 cut(s) 352
BstC8I GCNNGC 1 cut(s) 9
BstF5I GGATG 3 cut(s) 346, 436, 466
BstH2I RGCGCY 1 cut(s) 19
BstHHI GCGC 1 cut(s) 18
BstMAI GTCTC 1 cut(s) 174
BstMWI GCNNNNNNNGC 2 cut(s) 13, 352
BstSCI CCNGG 1 cut(s) 163
BsuRI GGCC 3 cut(s) 152, 177, 433
BtsCI GGATG 3 cut(s) 346, 436, 466
BtsI GCAGTG 2 cut(s) 35, 248
BtsIMutI CAGTG 4 cut(s) 35, 177, 248, 269
Cac8I GCNNGC 1 cut(s) 9
CciI TCATGA 1 cut(s) 469
CfoI GCGC 1 cut(s) 18
Cfr13I GGNCC 4 cut(s) 167, 175, 256, 431
CseI GACGC 1 cut(s) 310
Csp6I GTAC 1 cut(s) 316
CviAII CATG 2 cut(s) 364, 470
CviJI RGCY 6 cut(s) 29, 152, 177, 204, 217, 433
CviKI_1 RGCY 6 cut(s) 29, 152, 177, 204, 217, 433
CviQI GTAC 1 cut(s) 316
EciI GGCGGA 1 cut(s) 244
Eco147I AGGCCT 1 cut(s) 152
Eco24I GRGCYC 1 cut(s) 206
Eco47I GGWCC 2 cut(s) 167, 256
EcoT38I GRGCYC 1 cut(s) 206
FaeI CATG 2 cut(s) 367, 473
FaiI YATR 6 cut(s) 86, 114, 125, 189, 365, 471
FaqI GGGAC 1 cut(s) 308
FatI CATG 2 cut(s) 363, 469
Fnu4HI GCNGC 1 cut(s) 19
FokI GGATG 3 cut(s) 353, 423, 473
FriOI GRGCYC 1 cut(s) 206
Fsp4HI GCNGC 1 cut(s) 19
FspBI CTAG 1 cut(s) 26
GlaI GCGC 1 cut(s) 17
GluI GCNGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 293
HaeII RGCGCY 1 cut(s) 19
HaeIII GGCC 3 cut(s) 152, 177, 433
HapII CCGG 2 cut(s) 165, 397
HgaI GACGC 1 cut(s) 310
HhaI GCGC 1 cut(s) 18
Hin1II CATG 2 cut(s) 367, 473
Hin6I GCGC 1 cut(s) 16
HinP1I GCGC 1 cut(s) 16
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HindIII AAGCTT 1 cut(s) 215
HinfI GANTC 3 cut(s) 77, 128, 466
HpaII CCGG 2 cut(s) 165, 397
Hpy166II GTNNAC 2 cut(s) 256, 415
Hpy188I TCNGA 4 cut(s) 76, 286, 340, 453
Hpy188III TCNNGA 3 cut(s) 423, 470, 478
Hpy8I GTNNAC 2 cut(s) 256, 415
Hpy99I CGWCG 1 cut(s) 445
HpyAV CCTTC 1 cut(s) 226
HpyCH4III ACNGT 2 cut(s) 109, 294
HpyCH4IV ACGT 2 cut(s) 58, 120
HpyCH4V TGCA 4 cut(s) 7, 35, 84, 406
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 352
HpySE526I ACGT 2 cut(s) 58, 120
Hsp92II CATG 2 cut(s) 367, 473
HspAI GCGC 1 cut(s) 16
LpnPI CCDG 7 cut(s) 26, 178, 183, 257, 275, 403, 410
LweI GCATC 1 cut(s) 378
MaeI CTAG 1 cut(s) 26
MaeII ACGT 2 cut(s) 58, 120
MaeIII GTNAC 1 cut(s) 463
MboII GAAGA 2 cut(s) 59, 394
MhlI GDGCHC 2 cut(s) 206, 348
MluCI AATT 1 cut(s) 374
MlyI GAGTC 3 cut(s) 86, 122, 460
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 7 cut(s) 142, 244, 268, 337, 419, 438, 447
MspA1I CMGCKG 1 cut(s) 304
MspI CCGG 2 cut(s) 165, 397
MspR9I CCNGG 1 cut(s) 165
MwoI GCNNNNNNNGC 2 cut(s) 13, 352
NciI CCSGG 1 cut(s) 165
NlaIII CATG 2 cut(s) 367, 473
NlaIV GGNNCC 1 cut(s) 432
NmeAIII GCCGAG 1 cut(s) 203
NmuCI GTSAC 1 cut(s) 463
PagI TCATGA 1 cut(s) 469
PceI AGGCCT 1 cut(s) 152
PkrI GCNGC 1 cut(s) 20
PleI GAGTC 3 cut(s) 85, 122, 460
PpsI GAGTC 3 cut(s) 85, 122, 460
Psp1406I AACGTT 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 432
PspPI GGNCC 4 cut(s) 167, 175, 256, 431
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
SatI GCNGC 1 cut(s) 19
Sau96I GGNCC 4 cut(s) 167, 175, 256, 431
ScaI AGTACT 1 cut(s) 317
SchI GAGTC 3 cut(s) 86, 122, 460
ScrFI CCNGG 1 cut(s) 165
SduI GDGCHC 2 cut(s) 206, 348
SetI ASST 6 cut(s) 61, 123, 219, 255, 279, 449
SfaNI GCATC 1 cut(s) 378
SinI GGWCC 2 cut(s) 167, 256
SmlI CTYRAG 2 cut(s) 218, 478
SmoI CTYRAG 2 cut(s) 218, 478
Sse9I AATT 1 cut(s) 374
SseBI AGGCCT 1 cut(s) 152
SsiI CCGC 4 cut(s) 19, 229, 259, 302
SspMI CTAG 1 cut(s) 26
StuI AGGCCT 1 cut(s) 152
StyD4I CCNGG 1 cut(s) 163
TaaI ACNGT 2 cut(s) 109, 294
TaiI ACGT 2 cut(s) 61, 123
TaqI TCGA 4 cut(s) 249, 392, 422, 443
TasI AATT 1 cut(s) 374
TatI WGTACW 1 cut(s) 315
TauI GCSGC 1 cut(s) 21
TscAI CASTG 4 cut(s) 42, 177, 248, 276
TseFI GTSAC 1 cut(s) 463
Tsp45I GTSAC 1 cut(s) 463
TspDTI ATGAA 1 cut(s) 52
TspGWI ACGGA 2 cut(s) 429, 473
TspRI CASTG 4 cut(s) 42, 177, 248, 276
VpaK11BI GGWCC 2 cut(s) 167, 256
XapI RAATTY 1 cut(s) 374
XcmI CCANNNNNNNNNTGG 2 cut(s) 37, 142
XspI CTAG 1 cut(s) 26
ZrmI AGTACT 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.