Rmu_co8106108.1_g000001

acid phosphatase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8106108.1
OG0017691
Physical Location & Seq
Reverse (-)
2 .. 408
407 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8106108.1_g000001.1.cds

Sequence Viewer

Length: 407 bp
atggatgatactggaaattgggtctctgatcttgctctgatgaaagaaattgtcgttcagttttttgagaagcttttttctgtcaatgaggttattgatacgagttttaatattcctcttctatttccttgcattgaaactgagatgcttaactctactgctgttgagatatccatggatgaagttaaatctgccttattttctattggaggtttgaaagcccctggccatgatggtttccctgcagttttctttcaaaagcactggtacctgtataagtctgaaatttttgatattgtgcatgctgcttttcgtactggaatcattcctagtggcctgaaccacacactcataacacttgtgcctaaaatggtgagccctgagaatatgactcaatttcggcctat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

135

Amino Acids

15.21

Weight (kDa)

4.89

Isoelectric Point (pI)

29.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 267
AccB1I GGYRCC 1 cut(s) 267
AcoI YGGCCR 1 cut(s) 226
AcsI RAATTY 1 cut(s) 285
AfaI GTAC 2 cut(s) 269, 316
AgsI TTSAA 3 cut(s) 137, 217, 257
AjnI CCWGG 1 cut(s) 223
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
Alw26I GTCTC 1 cut(s) 28
AoxI GGCC 3 cut(s) 226, 334, 401
ApeKI GCWGC 1 cut(s) 305
ApoI RAATTY 1 cut(s) 285
Asp718I GGTACC 1 cut(s) 267
AsuHPI GGTGA 1 cut(s) 385
BalI TGGCCA 1 cut(s) 228
BanI GGYRCC 1 cut(s) 267
BanII GRGCYC 1 cut(s) 380
BbvI GCAGC 1 cut(s) 292
BccI CCATC 1 cut(s) 227
BciT130I CCWGG 1 cut(s) 225
BcoDI GTCTC 1 cut(s) 28
BfaI CTAG 1 cut(s) 330
BfmI CTRYAG 1 cut(s) 243
BisI GCNGC 1 cut(s) 306
BlsI GCNGC 1 cut(s) 307
Bme1390I CCNGG 1 cut(s) 225
BmiI GGNNCC 1 cut(s) 269
BmrFI CCNGG 1 cut(s) 225
BmsI GCATC 1 cut(s) 135
BsaI GGTCTC 1 cut(s) 28
BsaJI CCNNGG 2 cut(s) 174, 223
Bse1I ACTGG 3 cut(s) 16, 269, 322
BseBI CCWGG 1 cut(s) 225
BseDI CCNNGG 2 cut(s) 174, 223
BseGI GGATG 2 cut(s) 10, 184
BseMII CTCAG 2 cut(s) 132, 372
BseNI ACTGG 3 cut(s) 16, 269, 322
BseXI GCAGC 1 cut(s) 292
BshFI GGCC 3 cut(s) 228, 336, 403
BshNI GGYRCC 1 cut(s) 267
BsmAI GTCTC 1 cut(s) 28
BsnI GGCC 3 cut(s) 228, 336, 403
Bso31I GGTCTC 1 cut(s) 28
Bsp1286I GDGCHC 1 cut(s) 380
Bsp143I GATC 1 cut(s) 28
Bsp19I CCATGG 1 cut(s) 174
BspANI GGCC 3 cut(s) 228, 336, 403
BspCNI CTCAG 2 cut(s) 133, 373
BspLI GGNNCC 1 cut(s) 269
BspMAI CTGCAG 1 cut(s) 247
BspT107I GGYRCC 1 cut(s) 267
BspTNI GGTCTC 1 cut(s) 28
BsrI ACTGG 3 cut(s) 16, 269, 322
BssECI CCNNGG 2 cut(s) 174, 223
BssMI GATC 1 cut(s) 28
BssT1I CCWWGG 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 225
Bst6I CTCTTC 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 303
BstDEI CTNAG 2 cut(s) 141, 381
BstDSI CCRYGG 1 cut(s) 174
BstF5I GGATG 2 cut(s) 10, 184
BstKTI GATC 1 cut(s) 31
BstMAI GTCTC 1 cut(s) 28
BstMBI GATC 1 cut(s) 28
BstNI CCWGG 1 cut(s) 225
BstNSI RCATGY 1 cut(s) 305
BstSCI CCNGG 1 cut(s) 223
BstSFI CTRYAG 1 cut(s) 243
BstV1I GCAGC 1 cut(s) 292
BsuRI GGCC 3 cut(s) 228, 336, 403
BtgI CCRYGG 1 cut(s) 174
BtsCI GGATG 2 cut(s) 10, 184
BtsIMutI CAGTG 1 cut(s) 262
Cac8I GCNNGC 1 cut(s) 303
Csp6I GTAC 2 cut(s) 268, 315
CviAII CATG 3 cut(s) 175, 230, 302
CviJI RGCY 6 cut(s) 73, 221, 228, 336, 378, 403
CviKI_1 RGCY 6 cut(s) 73, 221, 228, 336, 378, 403
CviQI GTAC 2 cut(s) 268, 315
DdeI CTNAG 2 cut(s) 141, 381
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
EaeI YGGCCR 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Eco130I CCWWGG 1 cut(s) 174
Eco24I GRGCYC 1 cut(s) 380
Eco31I GGTCTC 1 cut(s) 28
Eco32I GATATC 1 cut(s) 171
EcoRII CCWGG 1 cut(s) 223
EcoRV GATATC 1 cut(s) 171
EcoT14I CCWWGG 1 cut(s) 174
EcoT38I GRGCYC 1 cut(s) 380
ErhI CCWWGG 1 cut(s) 174
FaeI CATG 3 cut(s) 178, 233, 305
FaiI YATR 6 cut(s) 176, 231, 276, 303, 353, 389
FatI CATG 3 cut(s) 174, 229, 301
Fnu4HI GCNGC 1 cut(s) 306
FokI GGATG 2 cut(s) 17, 191
FriOI GRGCYC 1 cut(s) 380
Fsp4HI GCNGC 1 cut(s) 306
FspBI CTAG 1 cut(s) 330
GluI GCNGC 1 cut(s) 306
HaeIII GGCC 3 cut(s) 228, 336, 403
Hin1II CATG 3 cut(s) 178, 233, 305
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 2 cut(s) 321, 391
HphI GGTGA 1 cut(s) 385
Hpy188I TCNGA 3 cut(s) 28, 39, 283
HpyCH4V TGCA 3 cut(s) 132, 245, 301
HpyF3I CTNAG 2 cut(s) 141, 381
Hsp92II CATG 3 cut(s) 178, 233, 305
KpnI GGTACC 1 cut(s) 271
Kzo9I GATC 1 cut(s) 28
LpnPI CCDG 8 cut(s) 210, 237, 250, 255, 284, 303, 350, 393
Lsp1109I GCAGC 1 cut(s) 292
LweI GCATC 1 cut(s) 135
MaeI CTAG 1 cut(s) 330
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 1 cut(s) 110
MhlI GDGCHC 1 cut(s) 380
MlsI TGGCCA 1 cut(s) 228
MluCI AATT 4 cut(s) 16, 48, 285, 395
MluNI TGGCCA 1 cut(s) 228
MlyI GAGTC 1 cut(s) 385
MnlI CCTC 3 cut(s) 82, 126, 203
Mox20I TGGCCA 1 cut(s) 228
MscI TGGCCA 1 cut(s) 228
MseI TTAA 3 cut(s) 108, 150, 186
Msp20I TGGCCA 1 cut(s) 228
MspR9I CCNGG 1 cut(s) 225
MvaI CCWGG 1 cut(s) 225
NcoI CCATGG 1 cut(s) 174
NdeII GATC 1 cut(s) 28
NlaIII CATG 3 cut(s) 178, 233, 305
NlaIV GGNNCC 1 cut(s) 269
NspI RCATGY 1 cut(s) 305
PaeI GCATGC 1 cut(s) 305
PfeI GAWTC 1 cut(s) 321
PkrI GCNGC 1 cut(s) 307
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
Psp6I CCWGG 1 cut(s) 223
PspGI CCWGG 1 cut(s) 223
PspN4I GGNNCC 1 cut(s) 269
PstI CTGCAG 1 cut(s) 247
RsaI GTAC 2 cut(s) 269, 316
RsaNI GTAC 2 cut(s) 268, 315
SaqAI TTAA 3 cut(s) 108, 150, 186
SatI GCNGC 1 cut(s) 306
Sau3AI GATC 1 cut(s) 28
SchI GAGTC 1 cut(s) 385
ScrFI CCNGG 1 cut(s) 225
SduI GDGCHC 1 cut(s) 380
SetI ASST 4 cut(s) 75, 93, 214, 273
SfaNI GCATC 1 cut(s) 135
SfcI CTRYAG 1 cut(s) 243
SphI GCATGC 1 cut(s) 305
Sse9I AATT 4 cut(s) 16, 48, 285, 395
SspI AATATT 1 cut(s) 112
SspMI CTAG 1 cut(s) 330
StyD4I CCNGG 1 cut(s) 223
StyI CCWWGG 1 cut(s) 174
TasI AATT 4 cut(s) 16, 48, 285, 395
TfiI GAWTC 1 cut(s) 321
Tru1I TTAA 3 cut(s) 108, 150, 186
Tru9I TTAA 3 cut(s) 108, 150, 186
TscAI CASTG 1 cut(s) 269
TseI GCWGC 1 cut(s) 305
TspDTI ATGAA 2 cut(s) 56, 195
TspRI CASTG 1 cut(s) 269
XapI RAATTY 1 cut(s) 285
XceI RCATGY 1 cut(s) 305
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.