Rmu_sc0001227.1_g000003

acid phosphatase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001227.1
OG0017691
Physical Location & Seq
Forward (+)
6855 .. 7636
782 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001227.1_g000003.1.cds

Sequence Viewer

Length: 648 bp
atgtggatgagccatgagcattataatgactttgtccgagatcattgggagcgagggagatggaggtcacttaaatatgctctcaaggagtggaacttcaatgtgtttggtaatgtcttcaggaagaaaaaaagattattagctaggcttaatggtattcagaaagctcttagcatatatcgcaaccctttcctggtaaacgttgagaaccaacttattaaagattatgaagtgataagagatcaggaagctcttctttggcagcagaaatctcgagataaatggctgaaggatggggataagaacactaagttcttccatttgactaccttgggggactccaggttcatcattcctcgtctctttcctatgttagaagatcatgatttactctggctcaagaggtctatttctgagaccgaggttaaatgtgctctctttgggattggtggtcttaaaacccctggtgcagatggatttcctgctgctttttgccagaaacattgggatctttgtgctactgaaattgtccatctggttaagaattcttttatttctggtgtcctccctgcaggtttgaatcatactctcttagcccttgttcctaaggttactagtccccaaatatggcattctttcgaccaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

215

Amino Acids

25.25

Weight (kDa)

9.44

Isoelectric Point (pI)

37.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 24
Acc36I ACCTGC 1 cut(s) 563
AclI AACGTT 1 cut(s) 201
AclWI GGATC 1 cut(s) 516
AcsI RAATTY 1 cut(s) 544
AcuI CTGAAG 2 cut(s) 103, 308
AfiI CCNNNNNNNGG 2 cut(s) 193, 627
AgsI TTSAA 2 cut(s) 100, 580
AhlI ACTAGT 1 cut(s) 614
AjnI CCWGG 3 cut(s) 192, 341, 463
AloI GAACNNNNNNTCC 2 cut(s) 329, 361
AluBI AGCT 3 cut(s) 143, 167, 251
AluI AGCT 3 cut(s) 143, 167, 251
Alw21I GWGCWC 1 cut(s) 436
Alw26I GTCTC 2 cut(s) 365, 410
AlwI GGATC 1 cut(s) 516
Ama87I CYCGRG 1 cut(s) 273
ApeKI GCWGC 2 cut(s) 262, 485
ApoI RAATTY 1 cut(s) 544
Asp700I GAANNNNTTC 1 cut(s) 252
AvaI CYCGRG 1 cut(s) 273
AxyI CCTNAGG 1 cut(s) 606
BbsI GAAGAC 1 cut(s) 109
Bbv12I GWGCWC 1 cut(s) 436
BbvI GCAGC 2 cut(s) 274, 472
BccI CCATC 4 cut(s) 54, 287, 467, 540
BcgI CGANNNNNNTGC 2 cut(s) 254, 288
BciT130I CCWGG 3 cut(s) 194, 343, 465
BcoDI GTCTC 2 cut(s) 365, 410
BcuI ACTAGT 1 cut(s) 614
BfaI CTAG 2 cut(s) 144, 615
BfmI CTRYAG 1 cut(s) 570
BfuAI ACCTGC 1 cut(s) 563
BisI GCNGC 2 cut(s) 263, 486
BlsI GCNGC 2 cut(s) 264, 487
Bme1390I CCNGG 3 cut(s) 194, 343, 465
BmeT110I CYCGRG 1 cut(s) 273
BmrFI CCNGG 3 cut(s) 194, 343, 465
BpiI GAAGAC 1 cut(s) 109
BpmI CTGGAG 1 cut(s) 325
BpuEI CTTGAG 2 cut(s) 68, 383
BsaI GGTCTC 1 cut(s) 410
BsaJI CCNNGG 3 cut(s) 330, 420, 463
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 627
Bse21I CCTNAGG 1 cut(s) 606
BseBI CCWGG 3 cut(s) 194, 343, 465
BseDI CCNNGG 3 cut(s) 330, 420, 463
BseGI GGATG 2 cut(s) 12, 298
BseLI CCNNNNNNNGG 2 cut(s) 193, 627
BseMII CTCAG 1 cut(s) 405
BseXI GCAGC 2 cut(s) 274, 472
BsgI GTGCAG 1 cut(s) 489
BsiHKAI GWGCWC 1 cut(s) 436
BsiHKCI CYCGRG 1 cut(s) 273
BslFI GGGAC 2 cut(s) 350, 603
BslI CCNNNNNNNGG 2 cut(s) 193, 627
BsmAI GTCTC 2 cut(s) 365, 410
BsmBI CGTCTC 1 cut(s) 365
BsmFI GGGAC 2 cut(s) 350, 603
BsmI GAATGC 1 cut(s) 631
Bso31I GGTCTC 1 cut(s) 410
BsoBI CYCGRG 1 cut(s) 273
Bsp1286I GDGCHC 1 cut(s) 436
Bsp143I GATC 4 cut(s) 40, 241, 379, 508
BspCNI CTCAG 1 cut(s) 406
BspHI TCATGA 1 cut(s) 382
BspMAI CTGCAG 1 cut(s) 574
BspMI ACCTGC 1 cut(s) 563
BspPI GGATC 1 cut(s) 516
BspQI GCTCTTC 1 cut(s) 258
BspTNI GGTCTC 1 cut(s) 410
BssECI CCNNGG 3 cut(s) 330, 420, 463
BssMI GATC 4 cut(s) 40, 241, 379, 508
BssT1I CCWWGG 1 cut(s) 330
Bst2UI CCWGG 3 cut(s) 194, 343, 465
Bst6I CTCTTC 1 cut(s) 258
BstDEI CTNAG 5 cut(s) 170, 309, 414, 592, 606
BstF5I GGATG 2 cut(s) 12, 298
BstKTI GATC 4 cut(s) 43, 244, 382, 511
BstMAI GTCTC 2 cut(s) 365, 410
BstMBI GATC 4 cut(s) 40, 241, 379, 508
BstMWI GCNNNNNNNGC 1 cut(s) 180
BstNI CCWGG 3 cut(s) 194, 343, 465
BstSCI CCNGG 3 cut(s) 192, 341, 463
BstSFI CTRYAG 1 cut(s) 570
BstV1I GCAGC 2 cut(s) 274, 472
BstV2I GAAGAC 1 cut(s) 109
BstX2I RGATCY 1 cut(s) 508
BstYI RGATCY 1 cut(s) 508
Bsu36I CCTNAGG 1 cut(s) 606
BtsCI GGATG 2 cut(s) 12, 298
BveI ACCTGC 1 cut(s) 563
CciI TCATGA 1 cut(s) 382
CviAII CATG 2 cut(s) 14, 383
CviJI RGCY 8 cut(s) 12, 143, 148, 167, 251, 286, 397, 596
CviKI_1 RGCY 8 cut(s) 12, 143, 148, 167, 251, 286, 397, 596
DdeI CTNAG 5 cut(s) 170, 309, 414, 592, 606
DpnI GATC 4 cut(s) 42, 243, 381, 510
DpnII GATC 4 cut(s) 40, 241, 379, 508
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
Eco130I CCWWGG 1 cut(s) 330
Eco31I GGTCTC 1 cut(s) 410
Eco57I CTGAAG 2 cut(s) 103, 308
Eco81I CCTNAGG 1 cut(s) 606
Eco88I CYCGRG 1 cut(s) 273
EcoRI GAATTC 1 cut(s) 544
EcoRII CCWGG 3 cut(s) 192, 341, 463
EcoT14I CCWWGG 1 cut(s) 330
ErhI CCWWGG 1 cut(s) 330
Esp3I CGTCTC 1 cut(s) 365
FaeI CATG 2 cut(s) 17, 386
FalI AAGNNNNNCTT 2 cut(s) 240, 272
FaqI GGGAC 2 cut(s) 350, 603
FatI CATG 2 cut(s) 13, 382
Fnu4HI GCNGC 2 cut(s) 263, 486
FokI GGATG 2 cut(s) 19, 305
Fsp4HI GCNGC 2 cut(s) 263, 486
FspBI CTAG 2 cut(s) 144, 615
GluI GCNGC 2 cut(s) 263, 486
GsuI CTGGAG 1 cut(s) 325
Hin1II CATG 2 cut(s) 17, 386
HinfI GANTC 2 cut(s) 338, 580
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 3 cut(s) 38, 162, 415
Hpy188III TCNNGA 6 cut(s) 121, 245, 273, 275, 383, 400
Hpy8I GTNNAC 1 cut(s) 199
HpyAV CCTTC 1 cut(s) 283
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 2 cut(s) 470, 572
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
HpyF3I CTNAG 5 cut(s) 170, 309, 414, 592, 606
HpySE526I ACGT 1 cut(s) 201
Hsp92II CATG 2 cut(s) 17, 386
Kzo9I GATC 4 cut(s) 40, 241, 379, 508
LguI GCTCTTC 1 cut(s) 258
LmnI GCTCC 1 cut(s) 49
Lsp1109I GCAGC 2 cut(s) 274, 472
MaeI CTAG 2 cut(s) 144, 615
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 2 cut(s) 66, 610
MalI GATC 4 cut(s) 42, 243, 381, 510
MboI GATC 4 cut(s) 40, 241, 379, 508
MboII GAAGA 5 cut(s) 109, 136, 245, 307, 389
MflI RGATCY 1 cut(s) 508
MhlI GDGCHC 1 cut(s) 436
MluCI AATT 2 cut(s) 525, 544
MlyI GAGTC 1 cut(s) 332
MnlI CCTC 6 cut(s) 47, 57, 366, 396, 415, 575
MroXI GAANNNNTTC 1 cut(s) 252
MseI TTAA 6 cut(s) 72, 150, 219, 426, 456, 540
MslI CAYNNNNRTG 1 cut(s) 24
MspR9I CCNGG 3 cut(s) 194, 343, 465
Mva1269I GAATGC 1 cut(s) 631
MvaI CCWGG 3 cut(s) 194, 343, 465
MwoI GCNNNNNNNGC 1 cut(s) 180
NdeII GATC 4 cut(s) 40, 241, 379, 508
NlaIII CATG 2 cut(s) 17, 386
NmuCI GTSAC 1 cut(s) 66
PaeR7I CTCGAG 1 cut(s) 273
PagI TCATGA 1 cut(s) 382
PciSI GCTCTTC 1 cut(s) 258
PctI GAATGC 1 cut(s) 631
PdmI GAANNNNTTC 1 cut(s) 252
PfeI GAWTC 1 cut(s) 580
PflFI GACNNNGTC 1 cut(s) 32
PkrI GCNGC 2 cut(s) 264, 487
PleI GAGTC 1 cut(s) 332
PpsI GAGTC 1 cut(s) 332
PsiI TTATAA 1 cut(s) 24
Psp1406I AACGTT 1 cut(s) 201
Psp6I CCWGG 3 cut(s) 192, 341, 463
PspGI CCWGG 3 cut(s) 192, 341, 463
PstI CTGCAG 1 cut(s) 574
PsuI RGATCY 1 cut(s) 508
PsyI GACNNNGTC 1 cut(s) 32
RseI CAYNNNNRTG 1 cut(s) 24
SapI GCTCTTC 1 cut(s) 258
SaqAI TTAA 6 cut(s) 72, 150, 219, 426, 456, 540
SatI GCNGC 2 cut(s) 263, 486
Sau3AI GATC 4 cut(s) 40, 241, 379, 508
SbfI CCTGCAGG 1 cut(s) 574
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 3 cut(s) 194, 343, 465
SdaI CCTGCAGG 1 cut(s) 574
SduI GDGCHC 1 cut(s) 436
SfcI CTRYAG 1 cut(s) 570
Sfr274I CTCGAG 1 cut(s) 273
SlaI CTCGAG 1 cut(s) 273
SmiMI CAYNNNNRTG 1 cut(s) 24
SmlI CTYRAG 3 cut(s) 83, 273, 398
SmoI CTYRAG 3 cut(s) 83, 273, 398
SpeI ACTAGT 1 cut(s) 614
Sse8387I CCTGCAGG 1 cut(s) 574
Sse9I AATT 2 cut(s) 525, 544
SspMI CTAG 2 cut(s) 144, 615
StyD4I CCNGG 3 cut(s) 192, 341, 463
StyI CCWWGG 1 cut(s) 330
TaiI ACGT 1 cut(s) 204
TaqI TCGA 2 cut(s) 274, 639
TaqII GACCGA 1 cut(s) 434
TasI AATT 2 cut(s) 525, 544
TfiI GAWTC 1 cut(s) 580
Tru1I TTAA 6 cut(s) 72, 150, 219, 426, 456, 540
Tru9I TTAA 6 cut(s) 72, 150, 219, 426, 456, 540
TseFI GTSAC 1 cut(s) 66
TseI GCWGC 2 cut(s) 262, 485
Tsp45I GTSAC 1 cut(s) 66
TspDTI ATGAA 2 cut(s) 243, 337
Tth111I GACNNNGTC 1 cut(s) 32
XapI RAATTY 1 cut(s) 544
XhoI CTCGAG 1 cut(s) 273
XmnI GAANNNNTTC 1 cut(s) 252
XspI CTAG 2 cut(s) 144, 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.