Rmu_sc0005339.1_g000007

acid phosphatase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005339.1
OG0017691
Physical Location & Seq
Forward (+)
22874 .. 23485
612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005339.1_g000007.1.cds

Sequence Viewer

Length: 612 bp
atgtggatgggacacattagttataataagtttgttcatgatcagtggaaaagctataatggtaccctgcaaaataaagttgttcaacttgcctgtgatctcaacgagtggaactccactgtgtttggtaatctttttaagaagaaaagaagactgctggctcgtattgctgggattcagaaatgtacggataggaattctaattcttttcttattaatctagagcaacaacttatccaggagtatgaagctgtgcgggaccaggaaactttatattggcaacaaaagtccagagtgaaatggctacagaacggggataaaaacaccaaattttttcatatgtcaaccatggttcgaagaaggaaaaacaaaattaaggctcttcttgacattgatggagttttatgtagtgaaataaatggtatgaaagctattgcagttgagtattttgcgaatttattttcttatgattctactgaagatgtgagattcattattccttatctatttcctactctggatagttgtgatttgagaaagatgaatagatgcatttccagggatgaggttaaaaatgttttgttcaatgttgggggcttgaaatctccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

203

Amino Acids

23.88

Weight (kDa)

9.43

Isoelectric Point (pI)

51.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 24
Acc65I GGTACC 1 cut(s) 62
AccB1I GGYRCC 1 cut(s) 62
AciI CCGC 1 cut(s) 256
AcsI RAATTY 3 cut(s) 196, 329, 454
AcuI CTGAAG 1 cut(s) 498
AfaI GTAC 2 cut(s) 64, 187
AgsI TTSAA 3 cut(s) 86, 586, 601
AjnI CCWGG 3 cut(s) 237, 261, 557
AluBI AGCT 3 cut(s) 54, 251, 431
AluI AGCT 3 cut(s) 54, 251, 431
ApoI RAATTY 3 cut(s) 196, 329, 454
AseI ATTAAT 1 cut(s) 216
Asp718I GGTACC 1 cut(s) 62
AspS9I GGNCC 1 cut(s) 259
AsuII TTCGAA 1 cut(s) 355
AvaII GGWCC 1 cut(s) 259
BanI GGYRCC 1 cut(s) 62
BbsI GAAGAC 1 cut(s) 157
BccI CCATC 1 cut(s) 389
BciT130I CCWGG 3 cut(s) 239, 263, 559
BclI TGATCA 1 cut(s) 40
BfaI CTAG 1 cut(s) 221
BfmI CTRYAG 1 cut(s) 305
Bme1390I CCNGG 3 cut(s) 239, 263, 559
Bme18I GGWCC 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 259
BmiI GGNNCC 2 cut(s) 64, 260
BmrFI CCNGG 3 cut(s) 239, 263, 559
BmsI GCATC 1 cut(s) 539
BpiI GAAGAC 1 cut(s) 157
BplI GAGNNNNNCTC 2 cut(s) 98, 130
Bpu14I TTCGAA 1 cut(s) 355
BsaJI CCNNGG 2 cut(s) 348, 558
BseBI CCWGG 3 cut(s) 239, 263, 559
BseDI CCNNGG 2 cut(s) 348, 558
BseGI GGATG 2 cut(s) 12, 568
BseYI CCCAGC 1 cut(s) 170
BshNI GGYRCC 1 cut(s) 62
BslFI GGGAC 2 cut(s) 24, 272
BsmFI GGGAC 2 cut(s) 24, 272
Bsp119I TTCGAA 1 cut(s) 355
Bsp143I GATC 2 cut(s) 40, 97
Bsp19I CCATGG 1 cut(s) 348
BspACI CCGC 1 cut(s) 256
BspHI TCATGA 1 cut(s) 37
BspLI GGNNCC 2 cut(s) 64, 260
BspQI GCTCTTC 1 cut(s) 387
BspT104I TTCGAA 1 cut(s) 355
BspT107I GGYRCC 1 cut(s) 62
BssECI CCNNGG 2 cut(s) 348, 558
BssMI GATC 2 cut(s) 40, 97
BssT1I CCWWGG 1 cut(s) 348
Bst2UI CCWGG 3 cut(s) 239, 263, 559
Bst4CI ACNGT 1 cut(s) 121
Bst6I CTCTTC 1 cut(s) 387
BstBI TTCGAA 1 cut(s) 355
BstC8I GCNNGC 1 cut(s) 159
BstDSI CCRYGG 1 cut(s) 348
BstF5I GGATG 2 cut(s) 12, 568
BstKTI GATC 2 cut(s) 43, 100
BstMBI GATC 2 cut(s) 40, 97
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstNI CCWGG 3 cut(s) 239, 263, 559
BstSCI CCNGG 3 cut(s) 237, 261, 557
BstSFI CTRYAG 1 cut(s) 305
BstV2I GAAGAC 1 cut(s) 157
BtgI CCRYGG 1 cut(s) 348
BtsCI GGATG 2 cut(s) 12, 568
BtsIMutI CAGTG 2 cut(s) 50, 117
Cac8I GCNNGC 1 cut(s) 159
CciI TCATGA 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 259
Csp6I GTAC 2 cut(s) 63, 186
CspCI CAANNNNNGTGG 2 cut(s) 106, 141
CviAII CATG 2 cut(s) 38, 349
CviJI RGCY 7 cut(s) 54, 161, 251, 304, 380, 431, 597
CviKI_1 RGCY 7 cut(s) 54, 161, 251, 304, 380, 431, 597
CviQI GTAC 2 cut(s) 63, 186
DpnI GATC 2 cut(s) 42, 99
DpnII GATC 2 cut(s) 40, 97
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
Eco130I CCWWGG 1 cut(s) 348
Eco47I GGWCC 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 498
EcoRI GAATTC 1 cut(s) 196
EcoRII CCWGG 3 cut(s) 237, 261, 557
EcoT14I CCWWGG 1 cut(s) 348
EcoT22I ATGCAT 1 cut(s) 554
ErhI CCWWGG 1 cut(s) 348
FaeI CATG 2 cut(s) 41, 352
FaqI GGGAC 2 cut(s) 24, 272
FatI CATG 2 cut(s) 37, 348
FauI CCCGC 1 cut(s) 249
FauNDI CATATG 1 cut(s) 339
FbaI TGATCA 1 cut(s) 40
FokI GGATG 2 cut(s) 19, 575
FspBI CTAG 1 cut(s) 221
GsaI CCCAGC 1 cut(s) 174
Hin1II CATG 2 cut(s) 41, 352
HincII GTYRAC 1 cut(s) 345
HindII GTYRAC 1 cut(s) 345
HinfI GANTC 3 cut(s) 175, 470, 489
Hpy166II GTNNAC 1 cut(s) 345
Hpy188I TCNGA 1 cut(s) 180
Hpy188III TCNNGA 5 cut(s) 38, 221, 291, 386, 518
Hpy8I GTNNAC 1 cut(s) 345
HpyAV CCTTC 1 cut(s) 354
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4V TGCA 3 cut(s) 70, 437, 552
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
Hsp92II CATG 2 cut(s) 41, 352
KpnI GGTACC 1 cut(s) 66
Ksp22I TGATCA 1 cut(s) 40
Kzo9I GATC 2 cut(s) 40, 97
LguI GCTCTTC 1 cut(s) 387
LweI GCATC 1 cut(s) 539
MaeI CTAG 1 cut(s) 221
MalI GATC 2 cut(s) 42, 99
MboI GATC 2 cut(s) 40, 97
MboII GAAGA 5 cut(s) 154, 162, 369, 374, 491
MluCI AATT 5 cut(s) 196, 202, 329, 372, 454
MnlI CCTC 1 cut(s) 559
Mph1103I ATGCAT 1 cut(s) 554
MseI TTAA 4 cut(s) 138, 216, 375, 570
MspR9I CCNGG 3 cut(s) 239, 263, 559
MvaI CCWGG 3 cut(s) 239, 263, 559
MwoI GCNNNNNNNGC 1 cut(s) 167
NcoI CCATGG 1 cut(s) 348
NdeI CATATG 1 cut(s) 339
NdeII GATC 2 cut(s) 40, 97
NlaIII CATG 2 cut(s) 41, 352
NlaIV GGNNCC 2 cut(s) 64, 260
NsiI ATGCAT 1 cut(s) 554
NspV TTCGAA 1 cut(s) 355
PagI TCATGA 1 cut(s) 37
PciSI GCTCTTC 1 cut(s) 387
PfeI GAWTC 3 cut(s) 175, 470, 489
PfoI TCCNGGA 1 cut(s) 237
PshBI ATTAAT 1 cut(s) 216
PsiI TTATAA 1 cut(s) 24
Psp6I CCWGG 3 cut(s) 237, 261, 557
PspFI CCCAGC 1 cut(s) 170
PspGI CCWGG 3 cut(s) 237, 261, 557
PspN4I GGNNCC 2 cut(s) 64, 260
PspPI GGNCC 1 cut(s) 259
RsaI GTAC 2 cut(s) 64, 187
RsaNI GTAC 2 cut(s) 63, 186
SapI GCTCTTC 1 cut(s) 387
SaqAI TTAA 4 cut(s) 138, 216, 375, 570
Sau3AI GATC 2 cut(s) 40, 97
Sau96I GGNCC 1 cut(s) 259
ScrFI CCNGG 3 cut(s) 239, 263, 559
SetI ASST 4 cut(s) 56, 253, 433, 570
SfaNI GCATC 1 cut(s) 539
SfcI CTRYAG 1 cut(s) 305
SfuI TTCGAA 1 cut(s) 355
SinI GGWCC 1 cut(s) 259
Sse9I AATT 5 cut(s) 196, 202, 329, 372, 454
SsiI CCGC 1 cut(s) 256
SspMI CTAG 1 cut(s) 221
StyD4I CCNGG 3 cut(s) 237, 261, 557
StyI CCWWGG 1 cut(s) 348
TaaI ACNGT 1 cut(s) 121
TaqI TCGA 1 cut(s) 355
TasI AATT 5 cut(s) 196, 202, 329, 372, 454
TfiI GAWTC 3 cut(s) 175, 470, 489
Tru1I TTAA 4 cut(s) 138, 216, 375, 570
Tru9I TTAA 4 cut(s) 138, 216, 375, 570
TscAI CASTG 2 cut(s) 50, 124
TspDTI ATGAA 6 cut(s) 26, 261, 326, 440, 481, 557
TspGWI ACGGA 1 cut(s) 203
TspRI CASTG 2 cut(s) 50, 124
VpaK11BI GGWCC 1 cut(s) 259
VspI ATTAAT 1 cut(s) 216
XapI RAATTY 3 cut(s) 196, 329, 454
XbaI TCTAGA 1 cut(s) 220
XspI CTAG 1 cut(s) 221
Zsp2I ATGCAT 1 cut(s) 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.