Rmu_sc0012746.1_g000024

acid phosphatase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012746.1
OG0017691
Physical Location & Seq
Forward (+)
65792 .. 66232
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012746.1_g000024.1.cds

Sequence Viewer

Length: 441 bp
atggatgatactgtaacttgggcctctgatcttgctctaatgaatgaaactgctattcagttttttgagaagcttttttctgtcaatgaggtcattgatacgagatttaatattcctcttctctttccttgcattgaaactgagatgctgaactctactgctgctgagatatccatggatgaagttaaatctgccttattttctactggaggtttgaaatcccctggccatgatggtttccctgctgttttctttcaaaagcactggtacctttataagtatgaaatttttgatattgtgcatactgtttttcatactggaatcatccctagtggcctgaaccacaaactcataacacttgtgcctaaaatggtgagccctgagaatatgactcaatttcggcctattagcttatgcaccactgtctacagattattttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

146

Amino Acids

16.66

Weight (kDa)

5.22

Isoelectric Point (pI)

27.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 276
Acc65I GGTACC 1 cut(s) 267
AccB1I GGYRCC 1 cut(s) 267
AccI GTMKAC 1 cut(s) 426
AcoI YGGCCR 1 cut(s) 226
AcsI RAATTY 1 cut(s) 285
AfaI GTAC 1 cut(s) 269
AgsI TTSAA 3 cut(s) 137, 217, 257
AjnI CCWGG 1 cut(s) 223
AluBI AGCT 2 cut(s) 73, 411
AluI AGCT 2 cut(s) 73, 411
AoxI GGCC 4 cut(s) 21, 226, 334, 401
ApeKI GCWGC 1 cut(s) 161
ApoI RAATTY 1 cut(s) 285
Asp718I GGTACC 1 cut(s) 267
AspS9I GGNCC 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 385
BalI TGGCCA 1 cut(s) 228
BanI GGYRCC 1 cut(s) 267
BanII GRGCYC 1 cut(s) 380
BbvI GCAGC 1 cut(s) 148
BccI CCATC 1 cut(s) 227
BciT130I CCWGG 1 cut(s) 225
BfaI CTAG 1 cut(s) 330
BfmI CTRYAG 1 cut(s) 427
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
Bme1390I CCNGG 1 cut(s) 225
BmgT120I GGNCC 1 cut(s) 21
BmiI GGNNCC 1 cut(s) 269
BmrFI CCNGG 1 cut(s) 225
BmsI GCATC 1 cut(s) 135
BpmI CTGGAG 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 174, 223
Bse1I ACTGG 3 cut(s) 211, 269, 322
BseBI CCWGG 1 cut(s) 225
BseDI CCNNGG 2 cut(s) 174, 223
BseGI GGATG 3 cut(s) 10, 184, 324
BseMII CTCAG 3 cut(s) 132, 156, 372
BseNI ACTGG 3 cut(s) 211, 269, 322
BseXI GCAGC 1 cut(s) 148
BshFI GGCC 4 cut(s) 23, 228, 336, 403
BshNI GGYRCC 1 cut(s) 267
BsnI GGCC 4 cut(s) 23, 228, 336, 403
Bsp1286I GDGCHC 1 cut(s) 380
Bsp143I GATC 1 cut(s) 28
Bsp19I CCATGG 1 cut(s) 174
BspANI GGCC 4 cut(s) 23, 228, 336, 403
BspCNI CTCAG 3 cut(s) 133, 157, 373
BspLI GGNNCC 1 cut(s) 269
BspT107I GGYRCC 1 cut(s) 267
BsrI ACTGG 3 cut(s) 211, 269, 322
BssECI CCNNGG 2 cut(s) 174, 223
BssMI GATC 1 cut(s) 28
BssT1I CCWWGG 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 225
Bst4CI ACNGT 3 cut(s) 13, 307, 424
Bst6I CTCTTC 1 cut(s) 123
BstDEI CTNAG 3 cut(s) 141, 165, 381
BstDSI CCRYGG 1 cut(s) 174
BstF5I GGATG 3 cut(s) 10, 184, 324
BstKTI GATC 1 cut(s) 31
BstMBI GATC 1 cut(s) 28
BstNI CCWGG 1 cut(s) 225
BstSCI CCNGG 1 cut(s) 223
BstSFI CTRYAG 1 cut(s) 427
BstV1I GCAGC 1 cut(s) 148
BsuRI GGCC 4 cut(s) 23, 228, 336, 403
BtgI CCRYGG 1 cut(s) 174
BtsCI GGATG 3 cut(s) 10, 184, 324
BtsIMutI CAGTG 2 cut(s) 262, 420
Cfr13I GGNCC 1 cut(s) 21
Csp6I GTAC 1 cut(s) 268
CviAII CATG 2 cut(s) 175, 230
CviJI RGCY 7 cut(s) 23, 73, 228, 336, 378, 403, 411
CviKI_1 RGCY 7 cut(s) 23, 73, 228, 336, 378, 403, 411
CviQI GTAC 1 cut(s) 268
DdeI CTNAG 3 cut(s) 141, 165, 381
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
EaeI YGGCCR 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Eco130I CCWWGG 1 cut(s) 174
Eco24I GRGCYC 1 cut(s) 380
Eco32I GATATC 1 cut(s) 171
EcoRII CCWGG 1 cut(s) 223
EcoRV GATATC 1 cut(s) 171
EcoT14I CCWWGG 1 cut(s) 174
EcoT38I GRGCYC 1 cut(s) 380
ErhI CCWWGG 1 cut(s) 174
FaeI CATG 2 cut(s) 178, 233
FaiI YATR 9 cut(s) 176, 231, 276, 282, 303, 315, 353, 389, 415
FatI CATG 2 cut(s) 174, 229
FblI GTMKAC 1 cut(s) 426
Fnu4HI GCNGC 1 cut(s) 162
FokI GGATG 3 cut(s) 17, 191, 311
FriOI GRGCYC 1 cut(s) 380
Fsp4HI GCNGC 1 cut(s) 162
FspBI CTAG 1 cut(s) 330
GluI GCNGC 1 cut(s) 162
GsuI CTGGAG 1 cut(s) 228
HaeIII GGCC 4 cut(s) 23, 228, 336, 403
Hin1II CATG 2 cut(s) 178, 233
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 2 cut(s) 321, 391
HphI GGTGA 1 cut(s) 385
Hpy166II GTNNAC 1 cut(s) 427
Hpy188I TCNGA 1 cut(s) 28
Hpy8I GTNNAC 1 cut(s) 427
HpyCH4III ACNGT 3 cut(s) 13, 307, 424
HpyCH4V TGCA 3 cut(s) 132, 301, 417
HpyF3I CTNAG 3 cut(s) 141, 165, 381
Hsp92II CATG 2 cut(s) 178, 233
KpnI GGTACC 1 cut(s) 271
Kzo9I GATC 1 cut(s) 28
LpnPI CCDG 8 cut(s) 192, 210, 237, 250, 255, 303, 350, 393
Lsp1109I GCAGC 1 cut(s) 148
LweI GCATC 1 cut(s) 135
MaeI CTAG 1 cut(s) 330
MaeIII GTNAC 1 cut(s) 13
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 1 cut(s) 110
MhlI GDGCHC 1 cut(s) 380
MlsI TGGCCA 1 cut(s) 228
MluCI AATT 2 cut(s) 285, 395
MluNI TGGCCA 1 cut(s) 228
MlyI GAGTC 1 cut(s) 385
MnlI CCTC 4 cut(s) 34, 82, 126, 203
Mox20I TGGCCA 1 cut(s) 228
MscI TGGCCA 1 cut(s) 228
MseI TTAA 2 cut(s) 108, 186
Msp20I TGGCCA 1 cut(s) 228
MspR9I CCNGG 1 cut(s) 225
MvaI CCWGG 1 cut(s) 225
NcoI CCATGG 1 cut(s) 174
NdeII GATC 1 cut(s) 28
NlaIII CATG 2 cut(s) 178, 233
NlaIV GGNNCC 1 cut(s) 269
PfeI GAWTC 1 cut(s) 321
PkrI GCNGC 1 cut(s) 163
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
PsiI TTATAA 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 223
PspGI CCWGG 1 cut(s) 223
PspN4I GGNNCC 1 cut(s) 269
PspPI GGNCC 1 cut(s) 21
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
SaqAI TTAA 2 cut(s) 108, 186
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 1 cut(s) 28
Sau96I GGNCC 1 cut(s) 21
SchI GAGTC 1 cut(s) 385
ScrFI CCNGG 1 cut(s) 225
SduI GDGCHC 1 cut(s) 380
SetI ASST 5 cut(s) 75, 93, 214, 273, 413
SfaNI GCATC 1 cut(s) 135
SfcI CTRYAG 1 cut(s) 427
Sse9I AATT 2 cut(s) 285, 395
SspI AATATT 1 cut(s) 112
SspMI CTAG 1 cut(s) 330
StyD4I CCNGG 1 cut(s) 223
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 3 cut(s) 13, 307, 424
TasI AATT 2 cut(s) 285, 395
TfiI GAWTC 1 cut(s) 321
Tru1I TTAA 2 cut(s) 108, 186
Tru9I TTAA 2 cut(s) 108, 186
TscAI CASTG 2 cut(s) 269, 427
TseI GCWGC 1 cut(s) 161
TspDTI ATGAA 5 cut(s) 56, 60, 195, 297, 302
TspRI CASTG 2 cut(s) 269, 427
XapI RAATTY 1 cut(s) 285
XmiI GTMKAC 1 cut(s) 426
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.