Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8134734.1

Orthogroup ID

OG0003796

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 634

Gene Structure 634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8134734.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 320 bp

gatcgagagaaggggagggaaagcttgaaggatactgatagggagaaggggaaagataaatatagggaaaaggagagggaggcagatcaagataaggagaaatcaagagacagacagagcaggagaagcgtggatgcttatgagtcgagcaagattggggaaagggatgagagtgctaagcttaatgatgacgataacagggataaggacattattaagcaaggtaagatgtcccataatgcttcttatgaacaaaatgccgagggtttgtcaggtggagcgcatctatcagcatccgagcttgaggaacgcatcctgaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0000481 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008380 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009908 GO:0009933 GO:0009965 GO:0009987 GO:0010016 GO:0010051 GO:0010087 GO:0010154 GO:0010305 GO:0010467 GO:0010588 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0022622 GO:0030532 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0046540 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048528 GO:0048532 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0061458 GO:0065003 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090567 GO:0090696 GO:0090698 GO:0097525 GO:0097526 GO:0099402 GO:0120114 GO:1901360 GO:1905392 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SART-1

Protein Analysis

106

Amino Acids

12.24

Weight (kDa)

5.35

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16780 AT5G16780 AT5G16780
fragaria_vesca	FvH4_4g15641 FvH4_4g15641 FvH4_4g15641 FvH4_4g15641
malus_domestica	MD13G1193700.v1.1 MD16G1194300.v1.1
prunus_persica	Prupe.1G014100_v2.0.a1 Prupe.1G014100_v2.0.a1 Prupe.1G014100_v2.0.a1
pyrus_communis	pycom13g16590 pycom16g16410
rosa_chinensis	RchiOBHm_Chr1g0362521 RchiOBHm_Chr4g0416151 RchiOBHm_Chr4g0416161
rosa_laevigata	RLG00000008010
rosa_multiflora	Rmu_co8134734.1_g000001 Rmu_sc0031164.1_g000005 Rmu_sc0034372.1_g000002 Rmu_sc0035291.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360010
rosa_rugosa	Rorug04G0139200 Rorug04G0139300 Rorug04G0139300
rosa_samantha	Rh4AG201400 Rh4BG198700 Rh4BG198900 Rh4CG212600 Rh4CG212700 Rh4CG214400 Rh4DG198800
rosa_wichuraiana	Rw4G017030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	28
AluBI	AGCT	3 cut(s)	24, 181, 301
AluI	AGCT	3 cut(s)	24, 181, 301
Alw26I	GTCTC	1 cut(s)	102
AspLEI	GCGC	1 cut(s)	283
BciVI	GTATCC	1 cut(s)	25
BcoDI	GTCTC	1 cut(s)	102
BfuI	GTATCC	1 cut(s)	25
BlpI	GCTNAGC	1 cut(s)	177
BmsI	GCATC	3 cut(s)	124, 292, 302
Bpu1102I	GCTNAGC	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	4 cut(s)	139, 172, 293, 312
BslFI	GGGAC	1 cut(s)	217
BsmAI	GTCTC	1 cut(s)	102
BsmFI	GGGAC	1 cut(s)	217
Bsp143I	GATC	1 cut(s)	85
Bsp1720I	GCTNAGC	1 cut(s)	177
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	1 cut(s)	85
BstDEI	CTNAG	1 cut(s)	177
BstF5I	GGATG	4 cut(s)	139, 172, 293, 312
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	2 cut(s)	4, 88
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BsuI	GTATCC	1 cut(s)	25
BtsCI	GGATG	4 cut(s)	139, 172, 293, 312
CfoI	GCGC	1 cut(s)	283
CviJI	RGCY	3 cut(s)	24, 181, 301
CviKI_1	RGCY	3 cut(s)	24, 181, 301
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	2 cut(s)	3, 87
DpnII	GATC	1 cut(s)	85
FaiI	YATR	4 cut(s)	63, 141, 237, 249
FaqI	GGGAC	1 cut(s)	217
FokI	GGATG	4 cut(s)	146, 179, 280, 299
GlaI	GCGC	1 cut(s)	282
HhaI	GCGC	1 cut(s)	283
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HindIII	AAGCTT	2 cut(s)	22, 179
HinfI	GANTC	1 cut(s)	143
Hpy188I	TCNGA	1 cut(s)	298
Hpy188III	TCNNGA	4 cut(s)	5, 89, 105, 316
HpyAV	CCTTC	3 cut(s)	4, 22, 40
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	1 cut(s)	177
HspAI	GCGC	1 cut(s)	281
Kzo9I	GATC	1 cut(s)	85
LmnI	GCTCC	1 cut(s)	278
LpnPI	CCDG	3 cut(s)	106, 184, 258
LweI	GCATC	3 cut(s)	124, 292, 302
MalI	GATC	2 cut(s)	3, 87
MboI	GATC	1 cut(s)	85
MlyI	GAGTC	1 cut(s)	152
MnlI	CCTC	5 cut(s)	9, 69, 73, 256, 298
MseI	TTAA	2 cut(s)	183, 216
MwoI	GCNNNNNNNGC	1 cut(s)	126
NdeII	GATC	1 cut(s)	85
NmeAIII	GCCGAG	1 cut(s)	286
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
SaqAI	TTAA	2 cut(s)	183, 216
Sau3AI	GATC	1 cut(s)	85
SchI	GAGTC	1 cut(s)	152
SetI	ASST	5 cut(s)	26, 183, 226, 277, 303
SfaNI	GCATC	3 cut(s)	124, 292, 302
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
TaqI	TCGA	2 cut(s)	4, 146
Tru1I	TTAA	2 cut(s)	183, 216
Tru9I	TTAA	2 cut(s)	183, 216
TspDTI	ATGAA	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.