Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003796

Physical Location & Seq

Genomic Coordinates Forward (+)

44271144 .. 44279247

Gene Structure 8104 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG212700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1482 bp

ATGGATGTGGAGAGGTATGAACAGCGTGAGGAGAGATATGATCGAGATGACTCTCCGGTGAGAGAGCAGCGGGAGGATGGGAATTCTGATGATTTAGAAGAGAATGGGAGCAGGCATAGGAGCAAGGATAGGAAGAAGAGTAGCCGAGGGGAAGAGAGGGATAGTAGAAGTAAAGACCGGGATAGGTCAAGGAGAAGTGGTGGTGATGATGTTGTCAAGGAAAGAGAGAAAGAATCTAAAGATTTGGAAAAGGATCGTGTGTCTAAGGAAAGGAGGAAGGATGATAGGGATGAGCGACATAAGGATAGGAGTAGAGATAACAAGGTGAGGGAGAGAGATTATGATCGAGAGAAGGAGCATGAGAGGGGGAAAGACAGAAAGGATCGAGGGAAGGATAGAGAGGGAGAGAAGGATGGTGATAAAGGACGAGACAAAGAGAGGGCGAAAGAGAAGATTAGGGATAGGGAAAAGGAAAGGGAAAGAGACAGGGCTAAAGAAAAAGAAAGAGAAAAGGAGAGAGAAAAGCATAAAGATCGAGAGAAGGGGAGGGAAAGCTTGAAGGATACTGATAGGGAGAAGGGGAAAGATAAATATAGGGAAAAGGAGAGGGAGGCAGATCAAGATAAGGAGAAATCAAGAGACAGACAGAGCAGGAGAAGCGTGGATGCTTATGAGTCGAGCAAGATTGGGGAAAGGGATGAGAGTGCTAAGCTTAATGATGACGATAACAAGGATAAGGACATTATTAAGCAAGGTAAGATGTTCCATAATGCTGCTGATGAACAAAATGCCGAGGGTTTGTCAGGTGGAGCACATCTATCAGCATCCGAGCTTGAGGAACGCATCCTGAAAACGAAGGAAGAGAGGTTAAAGAAGAAAACTGAAGACATTCCTGAGGTTTTAGCTTGGGTTAATAGGAGTCGTAAGCTCGAAGAGAAAAGGAATGCTGAAAAAGAGAAAGCTTTGCAGCTTTCAAAGATCTTTGAGGAACAGGACAATGTTGCCGAAGAAGAAAGTGAAGATGAGGAGGCAGCTCAGGATATGACTCATAATCTAGCTGGGGTTAAAGTTCTTCATGGCATTGATAAAGTGATGGACGGTGGCGCAGGTGTTTTAACACTCAAGGATCAGAACATTCTAGCTGATGGTGACATTAATGAAGATGTTGATATGCTTGAGAATGTGGAGCTTGGTGAGCAGAAGCAGCGAGATGACGCTTACAAGGCAGCAAAGAAAAAAACAGGGATTTATGCTGATAAGTTTAACGATGATCCTACTTTAGAGAAGAAAATTCTTCCACAATATGATGATCCTGCAGCAGATGAGGGGCTAACACTAGATGCAAGAGGACGCTTTACTGAGGGAGAGAGAAAATTGTTGCTGCACCCTTTGGTTTTAAGGACAAAGGCACTCATAATTCAGGTGACAGCTCCAGTTCCCCTGCTTTTGAAGAGACTTTATCTTCATGATTTGGTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0000481 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008380 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009908 GO:0009933 GO:0009965 GO:0009987 GO:0010016 GO:0010051 GO:0010087 GO:0010154 GO:0010305 GO:0010467 GO:0010588 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0022622 GO:0030532 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0046540 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048528 GO:0048532 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0061458 GO:0065003 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090567 GO:0090696 GO:0090698 GO:0097525 GO:0097526 GO:0099402 GO:0120114 GO:1901360 GO:1905392 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SART-1

Protein Analysis

493

Amino Acids

57.91

Weight (kDa)

5.75

Isoelectric Point (pI)

42.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SART-1	PF03343	296 - 451	4.6e-21	SART-1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16780 AT5G16780 AT5G16780
fragaria_vesca	FvH4_4g15641 FvH4_4g15641 FvH4_4g15641 FvH4_4g15641
malus_domestica	MD13G1193700.v1.1 MD16G1194300.v1.1
prunus_persica	Prupe.1G014100_v2.0.a1 Prupe.1G014100_v2.0.a1 Prupe.1G014100_v2.0.a1
pyrus_communis	pycom13g16590 pycom16g16410
rosa_chinensis	RchiOBHm_Chr1g0362521 RchiOBHm_Chr4g0416151 RchiOBHm_Chr4g0416161
rosa_laevigata	RLG00000008010
rosa_multiflora	Rmu_co8134734.1_g000001 Rmu_sc0031164.1_g000005 Rmu_sc0034372.1_g000002 Rmu_sc0035291.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360010
rosa_rugosa	Rorug04G0139200 Rorug04G0139300 Rorug04G0139300
rosa_samantha	Rh4AG201400 Rh4BG198700 Rh4BG198900 Rh4CG212600 Rh4CG212700 Rh4CG214400 Rh4DG198800
rosa_wichuraiana	Rw4G017030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1097
Acc36I	ACCTGC	1 cut(s)	1097
AciI	CCGC	1 cut(s)	70
AclWI	GGATC	5 cut(s)	261, 390, 1134, 1265, 1304
AcsI	RAATTY	2 cut(s)	82, 1290
AcuI	CTGAAG	1 cut(s)	903
AgsI	TTSAA	3 cut(s)	559, 975, 1450
Alw21I	GWGCWC	1 cut(s)	814
Alw26I	GTCTC	4 cut(s)	423, 477, 633, 1447
AlwI	GGATC	5 cut(s)	261, 390, 1134, 1265, 1304
ApeKI	GCWGC	8 cut(s)	67, 773, 967, 1031, 1204, 1226, 1316, 1381
ApoI	RAATTY	2 cut(s)	82, 1290
AseI	ATTAAT	1 cut(s)	1155
Asp700I	GAANNNNTTC	1 cut(s)	888
AspLEI	GCGC	1 cut(s)	1106
AsuC2I	CCSGG	1 cut(s)	179
AsuHPI	GGTGA	7 cut(s)	70, 215, 337, 428, 1160, 1205, 1435
AxyI	CCTNAGG	1 cut(s)	894
BbsI	GAAGAC	1 cut(s)	891
Bbv12I	GWGCWC	1 cut(s)	814
BbvI	GCAGC	8 cut(s)	79, 760, 979, 1043, 1216, 1238, 1328, 1368
BccI	CCATC	4 cut(s)	71, 407, 1087, 1139
BcgI	CGANNNNNNTGC	2 cut(s)	515, 549
BciVI	GTATCC	1 cut(s)	556
BcnI	CCSGG	1 cut(s)	179
BcoDI	GTCTC	4 cut(s)	423, 477, 633, 1447
BfaI	CTAG	3 cut(s)	1055, 1139, 1337
BfmI	CTRYAG	1 cut(s)	1314
BfuAI	ACCTGC	1 cut(s)	1097
BfuI	GTATCC	1 cut(s)	556
BglII	AGATCT	1 cut(s)	978
BisI	GCNGC	8 cut(s)	68, 774, 968, 1032, 1205, 1227, 1317, 1382
BlpI	GCTNAGC	1 cut(s)	708
BlsI	GCNGC	8 cut(s)	69, 775, 969, 1033, 1206, 1228, 1318, 1383
Bme1390I	CCNGG	1 cut(s)	179
BmrFI	CCNGG	1 cut(s)	179
BmsI	GCATC	4 cut(s)	655, 833, 852, 1330
BpiI	GAAGAC	1 cut(s)	891
BpmI	CTGGAG	1 cut(s)	1416
Bpu10I	CCTNAGC	1 cut(s)	1035
Bpu1102I	GCTNAGC	1 cut(s)	708
BpuEI	CTTGAG	3 cut(s)	854, 1106, 1196
BpuMI	CCSGG	1 cut(s)	179
BsaBI	GATNNNNATC	1 cut(s)	342
BsaJI	CCNNGG	2 cut(s)	145, 792
BsaWI	WCCGGW	1 cut(s)	55
BsaXI	ACNNNNNCTCC	2 cut(s)	184, 214
Bse1I	ACTGG	1 cut(s)	1433
Bse21I	CCTNAGG	1 cut(s)	894
Bse8I	GATNNNNATC	1 cut(s)	342
BseDI	CCNNGG	2 cut(s)	145, 792
BseGI	GGATG	9 cut(s)	10, 82, 286, 295, 418, 670, 703, 824, 843
BseJI	GATNNNNATC	1 cut(s)	342
BseMII	CTCAG	3 cut(s)	885, 1049, 1350
BseNI	ACTGG	1 cut(s)	1433
BseRI	GAGGAG	2 cut(s)	44, 1040
BseXI	GCAGC	8 cut(s)	79, 760, 979, 1043, 1216, 1238, 1328, 1368
BseYI	CCCAGC	1 cut(s)	1058
BsgI	GTGCAG	1 cut(s)	1367
BsiHKAI	GWGCWC	1 cut(s)	814
BsiSI	CCGG	2 cut(s)	56, 178
BsmAI	GTCTC	4 cut(s)	423, 477, 633, 1447
BsmI	GAATGC	1 cut(s)	949
Bsp1286I	GDGCHC	1 cut(s)	814
Bsp1720I	GCTNAGC	1 cut(s)	708
BspACI	CCGC	1 cut(s)	70
BspCNI	CTCAG	3 cut(s)	886, 1048, 1351
BspHI	TCATGA	1 cut(s)	1465
BspMAI	CTGCAG	1 cut(s)	1318
BspMI	ACCTGC	1 cut(s)	1097
BspPI	GGATC	5 cut(s)	261, 390, 1134, 1265, 1304
BsrI	ACTGG	1 cut(s)	1433
BssECI	CCNNGG	2 cut(s)	145, 792
Bst4CI	ACNGT	1 cut(s)	1100
Bst6I	CTCTTC	6 cut(s)	93, 131, 147, 855, 927, 1445
BstC8I	GCNNGC	1 cut(s)	113
BstDEI	CTNAG	5 cut(s)	264, 708, 894, 1035, 1359
BstF5I	GGATG	9 cut(s)	10, 82, 286, 295, 418, 670, 703, 824, 843
BstHHI	GCGC	1 cut(s)	1106
BstMAI	GTCTC	4 cut(s)	423, 477, 633, 1447
BstMWI	GCNNNNNNNGC	4 cut(s)	657, 1195, 1204, 1223
BstSCI	CCNGG	1 cut(s)	177
BstSFI	CTRYAG	1 cut(s)	1314
BstV1I	GCAGC	8 cut(s)	79, 760, 979, 1043, 1216, 1238, 1328, 1368
BstV2I	GAAGAC	1 cut(s)	891
BstX2I	RGATCY	1 cut(s)	978
BstYI	RGATCY	1 cut(s)	978
Bsu36I	CCTNAGG	1 cut(s)	894
BsuI	GTATCC	1 cut(s)	556
BtsCI	GGATG	9 cut(s)	10, 82, 286, 295, 418, 670, 703, 824, 843
BveI	ACCTGC	1 cut(s)	1097
Cac8I	GCNNGC	1 cut(s)	113
CciI	TCATGA	1 cut(s)	1465
CfoI	GCGC	1 cut(s)	1106
CseI	GACGC	2 cut(s)	1223, 1359
CviAII	CATG	3 cut(s)	359, 1076, 1466
DdeI	CTNAG	5 cut(s)	264, 708, 894, 1035, 1359
Eam1104I	CTCTTC	6 cut(s)	93, 131, 147, 855, 927, 1445
EarI	CTCTTC	6 cut(s)	93, 131, 147, 855, 927, 1445
Eco57I	CTGAAG	1 cut(s)	903
Eco81I	CCTNAGG	1 cut(s)	894
EcoRI	GAATTC	1 cut(s)	82
FaeI	CATG	3 cut(s)	362, 1079, 1469
FatI	CATG	3 cut(s)	358, 1075, 1465
FauI	CCCGC	1 cut(s)	63
Fnu4HI	GCNGC	8 cut(s)	68, 774, 968, 1032, 1205, 1227, 1317, 1382
FokI	GGATG	9 cut(s)	17, 89, 293, 302, 425, 677, 710, 811, 830
Fsp4HI	GCNGC	8 cut(s)	68, 774, 968, 1032, 1205, 1227, 1317, 1382
FspBI	CTAG	3 cut(s)	1055, 1139, 1337
GlaI	GCGC	1 cut(s)	1105
GluI	GCNGC	8 cut(s)	68, 774, 968, 1032, 1205, 1227, 1317, 1382
GsaI	CCCAGC	1 cut(s)	1062
GsuI	CTGGAG	1 cut(s)	1416
HapII	CCGG	2 cut(s)	56, 178
HgaI	GACGC	2 cut(s)	1223, 1359
HhaI	GCGC	1 cut(s)	1106
Hin1II	CATG	3 cut(s)	362, 1079, 1469
Hin6I	GCGC	1 cut(s)	1104
HinP1I	GCGC	1 cut(s)	1104
HindIII	AAGCTT	3 cut(s)	553, 710, 960
HinfI	GANTC	5 cut(s)	50, 233, 674, 919, 1045
HpaII	CCGG	2 cut(s)	56, 178
HphI	GGTGA	7 cut(s)	70, 215, 337, 428, 1160, 1205, 1435
Hpy188I	TCNGA	3 cut(s)	88, 829, 1131
Hpy188III	TCNNGA	9 cut(s)	44, 347, 536, 620, 636, 847, 893, 1037, 1466
HpyAV	CCTTC	8 cut(s)	271, 346, 385, 403, 535, 553, 571, 850
HpyCH4III	ACNGT	1 cut(s)	1100
HpyCH4V	TGCA	4 cut(s)	967, 1316, 1343, 1384
HpyF10VI	GCNNNNNNNGC	4 cut(s)	657, 1195, 1204, 1223
HpyF3I	CTNAG	5 cut(s)	264, 708, 894, 1035, 1359
Hsp92II	CATG	3 cut(s)	362, 1079, 1469
HspAI	GCGC	1 cut(s)	1104
LmnI	GCTCC	6 cut(s)	108, 120, 355, 809, 1186, 1435
Lsp1109I	GCAGC	8 cut(s)	79, 760, 979, 1043, 1216, 1238, 1328, 1368
LweI	GCATC	4 cut(s)	655, 833, 852, 1330
MaeI	CTAG	3 cut(s)	1055, 1139, 1337
MaeIII	GTNAC	2 cut(s)	1148, 1423
MflI	RGATCY	1 cut(s)	978
MhlI	GDGCHC	1 cut(s)	814
MluCI	AATT	4 cut(s)	82, 1290, 1373, 1416
MlyI	GAGTC	4 cut(s)	44, 683, 928, 1039
MroXI	GAANNNNTTC	1 cut(s)	888
MseI	TTAA	9 cut(s)	714, 747, 869, 912, 1065, 1115, 1155, 1263, 1397
MspA1I	CMGCKG	1 cut(s)	70
MspI	CCGG	2 cut(s)	56, 178
MspR9I	CCNGG	1 cut(s)	179
Mva1269I	GAATGC	1 cut(s)	949
MwoI	GCNNNNNNNGC	4 cut(s)	657, 1195, 1204, 1223
NciI	CCSGG	1 cut(s)	179
NlaIII	CATG	3 cut(s)	362, 1079, 1469
NmeAIII	GCCGAG	2 cut(s)	170, 817
NmuCI	GTSAC	2 cut(s)	1148, 1423
PagI	TCATGA	1 cut(s)	1465
PaqCI	CACCTGC	1 cut(s)	1097
PctI	GAATGC	1 cut(s)	949
PdmI	GAANNNNTTC	1 cut(s)	888
PfeI	GAWTC	1 cut(s)	233
PkrI	GCNGC	8 cut(s)	69, 775, 969, 1033, 1206, 1228, 1318, 1383
PleI	GAGTC	4 cut(s)	44, 682, 927, 1039
PpsI	GAGTC	4 cut(s)	44, 682, 927, 1039
PshBI	ATTAAT	1 cut(s)	1155
PspFI	CCCAGC	1 cut(s)	1058
PstI	CTGCAG	1 cut(s)	1318
PsuI	RGATCY	1 cut(s)	978
SaqAI	TTAA	9 cut(s)	714, 747, 869, 912, 1065, 1115, 1155, 1263, 1397
SatI	GCNGC	8 cut(s)	68, 774, 968, 1032, 1205, 1227, 1317, 1382
SchI	GAGTC	4 cut(s)	44, 683, 928, 1039
ScrFI	CCNGG	1 cut(s)	179
SduI	GDGCHC	1 cut(s)	814
SfaNI	GCATC	4 cut(s)	655, 833, 852, 1330
SfcI	CTRYAG	1 cut(s)	1314
SmlI	CTYRAG	3 cut(s)	833, 1121, 1175
SmoI	CTYRAG	3 cut(s)	833, 1121, 1175
Sse9I	AATT	4 cut(s)	82, 1290, 1373, 1416
SsiI	CCGC	1 cut(s)	70
SspMI	CTAG	3 cut(s)	1055, 1139, 1337
StyD4I	CCNGG	1 cut(s)	177
TaaI	ACNGT	1 cut(s)	1100
TaqI	TCGA	6 cut(s)	43, 346, 385, 535, 677, 930
TasI	AATT	4 cut(s)	82, 1290, 1373, 1416
TfiI	GAWTC	1 cut(s)	233
Tru1I	TTAA	9 cut(s)	714, 747, 869, 912, 1065, 1115, 1155, 1263, 1397
Tru9I	TTAA	9 cut(s)	714, 747, 869, 912, 1065, 1115, 1155, 1263, 1397
TseFI	GTSAC	2 cut(s)	1148, 1423
TseI	GCWGC	8 cut(s)	67, 773, 967, 1031, 1204, 1226, 1316, 1381
Tsp45I	GTSAC	2 cut(s)	1148, 1423
TspDTI	ATGAA	5 cut(s)	33, 795, 1064, 1173, 1454
VspI	ATTAAT	1 cut(s)	1155
XapI	RAATTY	2 cut(s)	82, 1290
XmnI	GAANNNNTTC	1 cut(s)	888
XspI	CTAG	3 cut(s)	1055, 1139, 1337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.