Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035291.1

Orthogroup ID

OG0003796

Physical Location & Seq

Genomic Coordinates Reverse (-)

472 .. 1326

Gene Structure 855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035291.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

atggatgtggagaggtatgaacagcgtgaggagagatatgatcgagatgactctccggtgagagagcagcgggaggatgggaattctgatgatttagaagagaatgggagcaggcataggagcaaggataggaagaagagtagccgaggggaagagagggatagtagaagtaaagaccgggataggtcgaggagaagtggtggtgatgatgttgtcaaggaaagagagaaagaatctaaagatttggaaaaggatcgtgtgtctaaggaaaggaggaaagatgatagggatgagcgatataaggataggagtagagataacaaggtgagggagagagattatgatcgagagaaggagcatgagaggggaaaagacagaaaggatcgagggaaggatagagagggagagaaggatggtgataaaggacgagacaaagagagggcgaaagagaagattagggatagggaaaaggaaagggaaagagacagggctaaagaaaaagaaagagaaaaggagagagaaaagcataacgatcgagagaaggggagggaaagcttgaaggatactgatagggagaaggggaaagataaatatagggaaaaggagagggaggcagatcaagataaggagaaatcaagagacagacagagcaggagaagcgtggatgcttatgagtcgagcaagattggggaaagggatgagagtgctaagcttaatgatgacgataacagggataaggacattattaagcaaggtaagatgtcccataatgcttcttatgaacaaaatgccgagggtttgtcaggtggagcgcatctatcagcatccgagcttgaggaacgcatcctgaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0000481 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008380 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009908 GO:0009933 GO:0009965 GO:0009987 GO:0010016 GO:0010051 GO:0010087 GO:0010154 GO:0010305 GO:0010467 GO:0010588 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0022622 GO:0030532 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0046540 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048528 GO:0048532 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0061458 GO:0065003 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090567 GO:0090696 GO:0090698 GO:0097525 GO:0097526 GO:0099402 GO:0120114 GO:1901360 GO:1905392 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SART-1

Protein Analysis

284

Amino Acids

34.32

Weight (kDa)

7.75

Isoelectric Point (pI)

41.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16780 AT5G16780 AT5G16780
fragaria_vesca	FvH4_4g15641 FvH4_4g15641 FvH4_4g15641 FvH4_4g15641
malus_domestica	MD13G1193700.v1.1 MD16G1194300.v1.1
prunus_persica	Prupe.1G014100_v2.0.a1 Prupe.1G014100_v2.0.a1 Prupe.1G014100_v2.0.a1
pyrus_communis	pycom13g16590 pycom16g16410
rosa_chinensis	RchiOBHm_Chr1g0362521 RchiOBHm_Chr4g0416151 RchiOBHm_Chr4g0416161
rosa_laevigata	RLG00000008010
rosa_multiflora	Rmu_co8134734.1_g000001 Rmu_sc0031164.1_g000005 Rmu_sc0034372.1_g000002 Rmu_sc0035291.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360010
rosa_rugosa	Rorug04G0139200 Rorug04G0139300 Rorug04G0139300
rosa_samantha	Rh4AG201400 Rh4BG198700 Rh4BG198900 Rh4CG212600 Rh4CG212700 Rh4CG214400 Rh4DG198800
rosa_wichuraiana	Rw4G017030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	70
AclWI	GGATC	2 cut(s)	261, 390
AcsI	RAATTY	1 cut(s)	82
AgsI	TTSAA	1 cut(s)	559
AluBI	AGCT	3 cut(s)	555, 712, 832
AluI	AGCT	3 cut(s)	555, 712, 832
Alw26I	GTCTC	3 cut(s)	423, 477, 633
AlwI	GGATC	2 cut(s)	261, 390
ApeKI	GCWGC	1 cut(s)	67
ApoI	RAATTY	1 cut(s)	82
AspLEI	GCGC	1 cut(s)	814
AsuC2I	CCSGG	1 cut(s)	179
AsuHPI	GGTGA	4 cut(s)	70, 215, 337, 428
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	2 cut(s)	71, 407
BcgI	CGANNNNNNTGC	2 cut(s)	515, 549
BciVI	GTATCC	1 cut(s)	556
BcnI	CCSGG	1 cut(s)	179
BcoDI	GTCTC	3 cut(s)	423, 477, 633
BfuI	GTATCC	1 cut(s)	556
BisI	GCNGC	1 cut(s)	68
BlpI	GCTNAGC	1 cut(s)	708
BlsI	GCNGC	1 cut(s)	69
Bme1390I	CCNGG	1 cut(s)	179
BmrFI	CCNGG	1 cut(s)	179
BmsI	GCATC	3 cut(s)	655, 823, 833
Bpu1102I	GCTNAGC	1 cut(s)	708
BpuEI	CTTGAG	1 cut(s)	854
BpuMI	CCSGG	1 cut(s)	179
BsaBI	GATNNNNATC	1 cut(s)	342
BsaJI	CCNNGG	2 cut(s)	145, 792
BsaWI	WCCGGW	1 cut(s)	55
BsaXI	ACNNNNNCTCC	2 cut(s)	184, 214
Bse8I	GATNNNNATC	1 cut(s)	342
BseDI	CCNNGG	2 cut(s)	145, 792
BseGI	GGATG	8 cut(s)	10, 82, 295, 418, 670, 703, 824, 843
BseJI	GATNNNNATC	1 cut(s)	342
BseRI	GAGGAG	2 cut(s)	44, 205
BseXI	GCAGC	1 cut(s)	79
Bsh1285I	CGRYCG	1 cut(s)	535
BsiEI	CGRYCG	1 cut(s)	535
BsiSI	CCGG	2 cut(s)	56, 178
BslFI	GGGAC	1 cut(s)	748
BsmAI	GTCTC	3 cut(s)	423, 477, 633
BsmFI	GGGAC	1 cut(s)	748
Bsp143I	GATC	6 cut(s)	40, 253, 343, 382, 532, 616
Bsp1720I	GCTNAGC	1 cut(s)	708
BspACI	CCGC	1 cut(s)	70
BspPI	GGATC	2 cut(s)	261, 390
BssECI	CCNNGG	2 cut(s)	145, 792
BssMI	GATC	6 cut(s)	40, 253, 343, 382, 532, 616
Bst6I	CTCTTC	3 cut(s)	93, 131, 147
BstC8I	GCNNGC	1 cut(s)	113
BstDEI	CTNAG	2 cut(s)	264, 708
BstF5I	GGATG	8 cut(s)	10, 82, 295, 418, 670, 703, 824, 843
BstHHI	GCGC	1 cut(s)	814
BstKTI	GATC	6 cut(s)	43, 256, 346, 385, 535, 619
BstMAI	GTCTC	3 cut(s)	423, 477, 633
BstMBI	GATC	6 cut(s)	40, 253, 343, 382, 532, 616
BstMCI	CGRYCG	1 cut(s)	535
BstMWI	GCNNNNNNNGC	1 cut(s)	657
BstSCI	CCNGG	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	79
BsuI	GTATCC	1 cut(s)	556
BtsCI	GGATG	8 cut(s)	10, 82, 295, 418, 670, 703, 824, 843
Cac8I	GCNNGC	1 cut(s)	113
CfoI	GCGC	1 cut(s)	814
CviAII	CATG	1 cut(s)	359
CviJI	RGCY	5 cut(s)	144, 491, 555, 712, 832
CviKI_1	RGCY	5 cut(s)	144, 491, 555, 712, 832
DdeI	CTNAG	2 cut(s)	264, 708
DpnI	GATC	6 cut(s)	42, 255, 345, 384, 534, 618
DpnII	GATC	6 cut(s)	40, 253, 343, 382, 532, 616
Eam1104I	CTCTTC	3 cut(s)	93, 131, 147
EarI	CTCTTC	3 cut(s)	93, 131, 147
EcoRI	GAATTC	1 cut(s)	82
FaeI	CATG	1 cut(s)	362
FaqI	GGGAC	1 cut(s)	748
FatI	CATG	1 cut(s)	358
FauI	CCCGC	1 cut(s)	63
Fnu4HI	GCNGC	1 cut(s)	68
FokI	GGATG	8 cut(s)	17, 89, 302, 425, 677, 710, 811, 830
Fsp4HI	GCNGC	1 cut(s)	68
GlaI	GCGC	1 cut(s)	813
GluI	GCNGC	1 cut(s)	68
HapII	CCGG	2 cut(s)	56, 178
HhaI	GCGC	1 cut(s)	814
Hin1II	CATG	1 cut(s)	362
Hin6I	GCGC	1 cut(s)	812
HinP1I	GCGC	1 cut(s)	812
HindIII	AAGCTT	2 cut(s)	553, 710
HinfI	GANTC	3 cut(s)	50, 233, 674
HpaII	CCGG	2 cut(s)	56, 178
HphI	GGTGA	4 cut(s)	70, 215, 337, 428
Hpy188I	TCNGA	2 cut(s)	88, 829
Hpy188III	TCNNGA	6 cut(s)	44, 347, 536, 620, 636, 847
HpyAV	CCTTC	6 cut(s)	346, 385, 403, 535, 553, 571
HpyF10VI	GCNNNNNNNGC	1 cut(s)	657
HpyF3I	CTNAG	2 cut(s)	264, 708
Hsp92II	CATG	1 cut(s)	362
HspAI	GCGC	1 cut(s)	812
Kzo9I	GATC	6 cut(s)	40, 253, 343, 382, 532, 616
LmnI	GCTCC	4 cut(s)	108, 120, 355, 809
LpnPI	CCDG	7 cut(s)	69, 97, 191, 472, 637, 715, 789
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	3 cut(s)	655, 823, 833
MalI	GATC	6 cut(s)	42, 255, 345, 384, 534, 618
MboI	GATC	6 cut(s)	40, 253, 343, 382, 532, 616
MboII	GAAGA	5 cut(s)	110, 145, 148, 164, 463
MluCI	AATT	1 cut(s)	82
MlyI	GAGTC	2 cut(s)	44, 683
MseI	TTAA	2 cut(s)	714, 747
MspA1I	CMGCKG	1 cut(s)	70
MspI	CCGG	2 cut(s)	56, 178
MspR9I	CCNGG	1 cut(s)	179
MwoI	GCNNNNNNNGC	1 cut(s)	657
NciI	CCSGG	1 cut(s)	179
NdeII	GATC	6 cut(s)	40, 253, 343, 382, 532, 616
NlaIII	CATG	1 cut(s)	362
NmeAIII	GCCGAG	2 cut(s)	170, 817
PfeI	GAWTC	1 cut(s)	233
PkrI	GCNGC	1 cut(s)	69
Ple19I	CGATCG	1 cut(s)	535
PleI	GAGTC	2 cut(s)	44, 682
PpsI	GAGTC	2 cut(s)	44, 682
PvuI	CGATCG	1 cut(s)	535
SaqAI	TTAA	2 cut(s)	714, 747
SatI	GCNGC	1 cut(s)	68
Sau3AI	GATC	6 cut(s)	40, 253, 343, 382, 532, 616
SchI	GAGTC	2 cut(s)	44, 683
ScrFI	CCNGG	1 cut(s)	179
SetI	ASST	8 cut(s)	17, 188, 327, 557, 714, 757, 808, 834
SfaNI	GCATC	3 cut(s)	655, 823, 833
SmlI	CTYRAG	1 cut(s)	833
SmoI	CTYRAG	1 cut(s)	833
Sse9I	AATT	1 cut(s)	82
SsiI	CCGC	1 cut(s)	70
StyD4I	CCNGG	1 cut(s)	177
TaqI	TCGA	6 cut(s)	43, 188, 346, 385, 535, 677
TasI	AATT	1 cut(s)	82
TfiI	GAWTC	1 cut(s)	233
Tru1I	TTAA	2 cut(s)	714, 747
Tru9I	TTAA	2 cut(s)	714, 747
TseI	GCWGC	1 cut(s)	67
TspDTI	ATGAA	2 cut(s)	33, 795
XapI	RAATTY	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.