Rmu_sc0034372.1_g000002

U4 U6.U5 tri-snRNP-associated protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0034372.1
Physical Location & Seq
Reverse (-)
3321 .. 7609
4289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0034372.1_g000002.1.cds

Sequence Viewer

Length: 1863 bp
atgatcttcaagtttattttgggtttcttgatttctcaagttgctcaatatgtgtttgcagataatctagctggggttaaagtccttcatggcattgataaagtgatggacggtggcgcggttgttttaacactcaaggatcagaacattctagctgatggtgacattaatgaagatgttgatatgcttgagaatgtggagcttggtgagcagaagcagcgagatgacgcttacaaggcagcaaagaaaaaaacagggatttatgttgataagtttaacgatgatcctactttagagaagaaaattcttccacaatatgatgatcctgctgcagatgaggggctaacactagatgcaagaggaagctttactggcgaagcagagaagaaacttgaagagctacgtatgaggttacagggtggttccacgaaaaaccgctctgaagatctcaccatgtctggaaagataacatctgactactatacaaatgaagaaatgctgcaatttaaaaagcccaagaaaaagaaaaccttcaggaagaaggagaagctagatctagatgcccttgaagcagaagccgtatctgcagggctgggtgctgcggacctcggttccaggaaggatggaaagaggcaggccactagagaggagcaagaaagattagaagctgagaagagaaatagtgcataccagttggctaaagataaagcaaatgaggcatctaaagcattgcgacaggacactcaatctgttaaggcagaggaagatgaaactccttactttgctgatgattatgatgaaattgataaagccttggagagatcaaggaaaatagctctacaaaagaaacaggaggagaaagtctccggtccaaaggcaattgctcgccttgccacagcagctgcaagcagcacaactgcagatgatcaattctcgtcaactggacagtcacaggaaaacaaggttgtgttcacagagatggaagaatttgtcttgggcctacagcttgaagaagaatcccacaaacctgaaagtgaagatgtgtttatgcaagaagatgaagaaccaaaagcttctgtagacgtagaaatgggggagcctagtggatggactgaagttaatgaaattgaagagaataaagcacaatctgctgctgatgataatgaggaaatagttccagatgaaactatccatgaagttgcagttgggaaaggtttatcaggtgtgctaaaactgcttaaagagcgaggtaatctcaaagaaggtattgaatggggcggtaggaacatggacaagaagaaaagcaaacttttaggcattgtagatgatgacgaggagccaaaggagacccatacagtgcgtcggagaaaggatgaacaaaaggatactcgttcgtcaggccatcaaaaggagatgcgtcctcctaaagtctatcaggaaaaggatattcacattgagagaactgacgaatttggtcgaactttgacaccaaaggaagcctttcgggtactttcacataaatttcatgggaaggggccaggaaaaatgaagcaagaaaagcgcatgaagcaataccacgaagaactcaagttgaagcagatgaagagctcagatacaccatccctgtctgtggagaggatgagggaaactcaagctcggttacagacaccctatcttgttctcagtggccatgttaaaccagggcaaactagcgatcccagaagtggttttgctactgtggagaaggatctcccagggggcttgacgcctatgcttggtgacagaaaggtcgaacattttctggggataaagcgcaaagatgaaactgaaagttcaggcacaccgaagaagccaaaaacttga

Protein Analysis

620

Amino Acids

69.75

Weight (kDa)

5.45

Isoelectric Point (pI)

41.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1787
AccBSI CCGCTC 1 cut(s) 438
AccI GTMKAC 1 cut(s) 1080
AccII CGCG 1 cut(s) 119
AciI CCGC 4 cut(s) 119, 436, 602, 1278
AclWI GGATC 5 cut(s) 147, 278, 317, 1709, 1755
AcoI YGGCCR 1 cut(s) 1687
AcsI RAATTY 4 cut(s) 303, 986, 1469, 1520
AcuI CTGAAG 3 cut(s) 462, 517, 1134
AcyI GRCGYC 1 cut(s) 1766
AfaI GTAC 1 cut(s) 1509
AfiI CCNNNNNNNGG 4 cut(s) 1408, 1630, 1724, 1775
AgsI TTSAA 7 cut(s) 10, 395, 569, 1010, 1130, 1271, 1594
AjnI CCWGG 4 cut(s) 614, 1537, 1699, 1753
AjuI GAANNNNNNNTTGG 2 cut(s) 1188, 1220
Alw21I GWGCWC 1 cut(s) 1610
Alw26I GTCTC 2 cut(s) 868, 1340
AlwI GGATC 5 cut(s) 147, 278, 317, 1709, 1755
AlwNI CAGNNNCTG 1 cut(s) 902
AoxI GGCC 5 cut(s) 636, 997, 1399, 1535, 1687
ApeKI GCWGC 9 cut(s) 217, 239, 329, 499, 599, 899, 902, 909, 1151
ApoI RAATTY 4 cut(s) 303, 986, 1469, 1520
AseI ATTAAT 1 cut(s) 168
Asp700I GAANNNNTTC 4 cut(s) 530, 1173, 1500, 1797
AspLEI GCGC 3 cut(s) 119, 1563, 1815
AspS9I GGNCC 4 cut(s) 604, 869, 997, 1535
AsuHPI GGTGA 4 cut(s) 173, 218, 442, 1790
AvaII GGWCC 2 cut(s) 604, 869
BalI TGGCCA 1 cut(s) 1689
BanII GRGCYC 1 cut(s) 1610
Bbv12I GWGCWC 1 cut(s) 1610
BbvI GCAGC 9 cut(s) 229, 251, 316, 486, 586, 889, 911, 921, 1138
BccI CCATC 7 cut(s) 100, 152, 617, 973, 1101, 1410, 1627
BceAI ACGGC 1 cut(s) 563
BciT130I CCWGG 4 cut(s) 616, 1539, 1701, 1755
BciVI GTATCC 1 cut(s) 1378
BclI TGATCA 1 cut(s) 925
BcoDI GTCTC 2 cut(s) 868, 1340
BfaI CTAG 8 cut(s) 68, 152, 350, 551, 557, 642, 1101, 1710
BfmI CTRYAG 5 cut(s) 330, 585, 918, 1001, 1077
BfuI GTATCC 1 cut(s) 1378
BglII AGATCT 2 cut(s) 445, 553
BisI GCNGC 9 cut(s) 218, 240, 330, 500, 600, 900, 903, 910, 1152
BlsI GCNGC 9 cut(s) 219, 241, 331, 501, 601, 901, 904, 911, 1153
Bme1390I CCNGG 4 cut(s) 616, 1539, 1701, 1755
Bme18I GGWCC 2 cut(s) 604, 869
BmgT120I GGNCC 4 cut(s) 604, 869, 997, 1535
BmiI GGNNCC 5 cut(s) 424, 613, 1098, 1338, 1536
BmrFI CCNGG 4 cut(s) 616, 1539, 1701, 1755
BmsI GCATC 4 cut(s) 343, 550, 728, 1404
BplI GAGNNNNNCTC 6 cut(s) 848, 880, 1239, 1271, 1633, 1665
BpuEI CTTGAG 5 cut(s) 21, 119, 209, 1571, 1635
BsaAI YACGTR 1 cut(s) 404
BsaHI GRCGYC 1 cut(s) 1766
BsaI GGTCTC 1 cut(s) 1340
BsaJI CCNNGG 5 cut(s) 607, 813, 1700, 1753, 1754
BsaWI WCCGGW 1 cut(s) 866
Bsc4I CCNNNNNNNGG 4 cut(s) 1408, 1630, 1724, 1775
Bse1I ACTGG 3 cut(s) 376, 691, 946
Bse3DI GCAATG 1 cut(s) 728
BseBI CCWGG 4 cut(s) 616, 1539, 1701, 1755
BseDI CCNNGG 5 cut(s) 607, 813, 1700, 1753, 1754
BseGI GGATG 5 cut(s) 628, 1112, 1378, 1619, 1644
BseLI CCNNNNNNNGG 4 cut(s) 1408, 1630, 1724, 1775
BseMI GCAATG 1 cut(s) 728
BseMII CTCAG 3 cut(s) 660, 1623, 1696
BseNI ACTGG 3 cut(s) 376, 691, 946
BseRI GAGGAG 3 cut(s) 662, 869, 1349
BseXI GCAGC 9 cut(s) 229, 251, 316, 486, 586, 889, 911, 921, 1138
BseYI CCCAGC 2 cut(s) 71, 592
Bsh1236I CGCG 1 cut(s) 119
BshFI GGCC 5 cut(s) 638, 999, 1401, 1537, 1689
BsiHKAI GWGCWC 1 cut(s) 1610
BsiSI CCGG 1 cut(s) 867
BslI CCNNNNNNNGG 4 cut(s) 1408, 1630, 1724, 1775
BsmAI GTCTC 2 cut(s) 868, 1340
BsnI GGCC 5 cut(s) 638, 999, 1401, 1537, 1689
Bso31I GGTCTC 1 cut(s) 1340
Bsp1286I GDGCHC 1 cut(s) 1610
BspACI CCGC 4 cut(s) 119, 436, 602, 1278
BspANI GGCC 5 cut(s) 638, 999, 1401, 1537, 1689
BspCNI CTCAG 3 cut(s) 661, 1622, 1695
BspFNI CGCG 1 cut(s) 119
BspLI GGNNCC 5 cut(s) 424, 613, 1098, 1338, 1536
BspMAI CTGCAG 3 cut(s) 334, 589, 922
BspPI GGATC 5 cut(s) 147, 278, 317, 1709, 1755
BspQI GCTCTTC 2 cut(s) 390, 1598
BspTNI GGTCTC 1 cut(s) 1340
BsrBI CCGCTC 1 cut(s) 438
BsrDI GCAATG 1 cut(s) 728
BsrI ACTGG 3 cut(s) 376, 691, 946
BssECI CCNNGG 5 cut(s) 607, 813, 1700, 1753, 1754
BssNI GRCGYC 1 cut(s) 1766
BssT1I CCWWGG 1 cut(s) 813
Bst2UI CCWGG 4 cut(s) 616, 1539, 1701, 1755
Bst4CI ACNGT 4 cut(s) 113, 948, 1357, 1738
Bst6I CTCTTC 4 cut(s) 390, 668, 1125, 1598
BstACI GRCGYC 1 cut(s) 1766
BstAPI GCANNNNNTGC 1 cut(s) 1148
BstBAI YACGTR 1 cut(s) 404
BstC8I GCNNGC 3 cut(s) 636, 886, 907
BstDEI CTNAG 3 cut(s) 669, 1609, 1682
BstF5I GGATG 5 cut(s) 628, 1112, 1378, 1619, 1644
BstFNI CGCG 1 cut(s) 119
BstHHI GCGC 3 cut(s) 119, 1563, 1815
BstMAI GTCTC 2 cut(s) 868, 1340
BstNI CCWGG 4 cut(s) 616, 1539, 1701, 1755
BstSCI CCNGG 4 cut(s) 614, 1537, 1699, 1753
BstSFI CTRYAG 5 cut(s) 330, 585, 918, 1001, 1077
BstSNI TACGTA 1 cut(s) 404
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 9 cut(s) 229, 251, 316, 486, 586, 889, 911, 921, 1138
BstX2I RGATCY 3 cut(s) 445, 553, 1747
BstYI RGATCY 3 cut(s) 445, 553, 1747
BsuI GTATCC 1 cut(s) 1378
BsuRI GGCC 5 cut(s) 638, 999, 1401, 1537, 1689
BtsCI GGATG 5 cut(s) 628, 1112, 1378, 1619, 1644
BtsIMutI CAGTG 2 cut(s) 1362, 1690
Cac8I GCNNGC 3 cut(s) 636, 886, 907
CaiI CAGNNNCTG 1 cut(s) 902
CfoI GCGC 3 cut(s) 119, 1563, 1815
Cfr13I GGNCC 4 cut(s) 604, 869, 997, 1535
CseI GACGC 4 cut(s) 236, 1349, 1406, 1774
Csp6I GTAC 1 cut(s) 1508
CviAII CATG 7 cut(s) 89, 454, 1193, 1288, 1526, 1564, 1691
CviQI GTAC 1 cut(s) 1508
DdeI CTNAG 3 cut(s) 669, 1609, 1682
DraI TTTAAA 1 cut(s) 508
DrdI GACNNNNNNGTC 1 cut(s) 1787
DseDI GACNNNNNNGTC 1 cut(s) 1787
EaeI YGGCCR 1 cut(s) 1687
Eam1104I CTCTTC 4 cut(s) 390, 668, 1125, 1598
EarI CTCTTC 4 cut(s) 390, 668, 1125, 1598
Ecl136II GAGCTC 1 cut(s) 1608
Eco105I TACGTA 1 cut(s) 404
Eco130I CCWWGG 1 cut(s) 813
Eco24I GRGCYC 1 cut(s) 1610
Eco31I GGTCTC 1 cut(s) 1340
Eco47I GGWCC 2 cut(s) 604, 869
Eco53kI GAGCTC 1 cut(s) 1608
Eco57I CTGAAG 3 cut(s) 462, 517, 1134
EcoICRI GAGCTC 1 cut(s) 1608
EcoRII CCWGG 4 cut(s) 614, 1537, 1699, 1753
EcoT14I CCWWGG 1 cut(s) 813
EcoT38I GRGCYC 1 cut(s) 1610
ErhI CCWWGG 1 cut(s) 813
FaeI CATG 7 cut(s) 92, 457, 1196, 1291, 1529, 1567, 1694
FalI AAGNNNNNCTT 4 cut(s) 515, 547, 1484, 1516
FatI CATG 7 cut(s) 88, 453, 1192, 1287, 1525, 1563, 1690
FbaI TGATCA 1 cut(s) 925
FblI GTMKAC 1 cut(s) 1080
Fnu4HI GCNGC 9 cut(s) 218, 240, 330, 500, 600, 900, 903, 910, 1152
FokI GGATG 5 cut(s) 635, 1119, 1385, 1606, 1651
FriOI GRGCYC 1 cut(s) 1610
Fsp4HI GCNGC 9 cut(s) 218, 240, 330, 500, 600, 900, 903, 910, 1152
FspBI CTAG 8 cut(s) 68, 152, 350, 551, 557, 642, 1101, 1710
GlaI GCGC 3 cut(s) 118, 1562, 1814
GluI GCNGC 9 cut(s) 218, 240, 330, 500, 600, 900, 903, 910, 1152
GsaI CCCAGC 2 cut(s) 75, 596
HaeIII GGCC 5 cut(s) 638, 999, 1401, 1537, 1689
HapII CCGG 1 cut(s) 867
HgaI GACGC 4 cut(s) 236, 1349, 1406, 1774
HhaI GCGC 3 cut(s) 119, 1563, 1815
Hin1I GRCGYC 1 cut(s) 1766
Hin1II CATG 7 cut(s) 92, 457, 1196, 1291, 1529, 1567, 1694
Hin6I GCGC 3 cut(s) 117, 1561, 1813
HinP1I GCGC 3 cut(s) 117, 1561, 1813
HincII GTYRAC 1 cut(s) 939
HindII GTYRAC 1 cut(s) 939
HindIII AAGCTT 2 cut(s) 364, 1071
HinfI GANTC 1 cut(s) 1016
HpaII CCGG 1 cut(s) 867
HphI GGTGA 4 cut(s) 173, 218, 442, 1790
Hpy166II GTNNAC 3 cut(s) 939, 972, 1081
Hpy188I TCNGA 5 cut(s) 144, 442, 475, 1365, 1612
Hpy188III TCNNGA 6 cut(s) 28, 459, 535, 557, 1178, 1436
Hpy8I GTNNAC 3 cut(s) 939, 972, 1081
Hpy99I CGWCG 1 cut(s) 1365
HpyAV CCTTC 7 cut(s) 95, 535, 541, 613, 1256, 1525, 1738
HpyCH4III ACNGT 4 cut(s) 113, 948, 1357, 1738
HpyCH4IV ACGT 2 cut(s) 403, 1083
HpyF3I CTNAG 3 cut(s) 669, 1609, 1682
HpySE526I ACGT 2 cut(s) 403, 1083
Hsp92I GRCGYC 1 cut(s) 1766
Hsp92II CATG 7 cut(s) 92, 457, 1196, 1291, 1529, 1567, 1694
HspAI GCGC 3 cut(s) 117, 1561, 1813
Ksp22I TGATCA 1 cut(s) 925
LguI GCTCTTC 2 cut(s) 390, 1598
LmnI GCTCC 4 cut(s) 199, 649, 1096, 1336
Lsp1109I GCAGC 9 cut(s) 229, 251, 316, 486, 586, 889, 911, 921, 1138
LweI GCATC 4 cut(s) 343, 550, 728, 1404
MaeI CTAG 8 cut(s) 68, 152, 350, 551, 557, 642, 1101, 1710
MaeII ACGT 2 cut(s) 403, 1083
MaeIII GTNAC 5 cut(s) 161, 411, 948, 1659, 1778
MbiI CCGCTC 1 cut(s) 438
MfeI CAATTG 1 cut(s) 879
MflI RGATCY 3 cut(s) 445, 553, 1747
MhlI GDGCHC 1 cut(s) 1610
MlsI TGGCCA 1 cut(s) 1689
MluCI AATT 9 cut(s) 303, 503, 801, 879, 929, 986, 1125, 1469, 1520
MluNI TGGCCA 1 cut(s) 1689
MmeI TCCRAC 1 cut(s) 1343
Mox20I TGGCCA 1 cut(s) 1689
MroXI GAANNNNTTC 4 cut(s) 530, 1173, 1500, 1797
MscI TGGCCA 1 cut(s) 1689
MseI TTAA 9 cut(s) 78, 128, 168, 276, 507, 753, 1119, 1239, 1695
MslI CAYNNNNRTG 1 cut(s) 977
Msp20I TGGCCA 1 cut(s) 1689
MspA1I CMGCKG 1 cut(s) 902
MspI CCGG 1 cut(s) 867
MspR9I CCNGG 4 cut(s) 616, 1539, 1701, 1755
MunI CAATTG 1 cut(s) 879
MvaI CCWGG 4 cut(s) 616, 1539, 1701, 1755
MvnI CGCG 1 cut(s) 119
NlaIII CATG 7 cut(s) 92, 457, 1196, 1291, 1529, 1567, 1694
NlaIV GGNNCC 5 cut(s) 424, 613, 1098, 1338, 1536
NmuCI GTSAC 3 cut(s) 161, 948, 1778
PasI CCCWGGG 1 cut(s) 1754
PciSI GCTCTTC 2 cut(s) 390, 1598
PdmI GAANNNNTTC 4 cut(s) 530, 1173, 1500, 1797
PfeI GAWTC 1 cut(s) 1016
PfoI TCCNGGA 1 cut(s) 614
PkrI GCNGC 9 cut(s) 219, 241, 331, 501, 601, 901, 904, 911, 1153
Ppu21I YACGTR 1 cut(s) 404
PshBI ATTAAT 1 cut(s) 168
Psp124BI GAGCTC 1 cut(s) 1610
Psp6I CCWGG 4 cut(s) 614, 1537, 1699, 1753
PspFI CCCAGC 2 cut(s) 71, 592
PspGI CCWGG 4 cut(s) 614, 1537, 1699, 1753
PspN4I GGNNCC 5 cut(s) 424, 613, 1098, 1338, 1536
PspPI GGNCC 4 cut(s) 604, 869, 997, 1535
PstI CTGCAG 3 cut(s) 334, 589, 922
PstNI CAGNNNCTG 1 cut(s) 902
PsuI RGATCY 3 cut(s) 445, 553, 1747
PvuII CAGCTG 1 cut(s) 902
RsaI GTAC 1 cut(s) 1509
RsaNI GTAC 1 cut(s) 1508
RseI CAYNNNNRTG 1 cut(s) 977
SacI GAGCTC 1 cut(s) 1610
SapI GCTCTTC 2 cut(s) 390, 1598
SaqAI TTAA 9 cut(s) 78, 128, 168, 276, 507, 753, 1119, 1239, 1695
SatI GCNGC 9 cut(s) 218, 240, 330, 500, 600, 900, 903, 910, 1152
Sau96I GGNCC 4 cut(s) 604, 869, 997, 1535
ScrFI CCNGG 4 cut(s) 616, 1539, 1701, 1755
SduI GDGCHC 1 cut(s) 1610
SfaNI GCATC 4 cut(s) 343, 550, 728, 1404
SfcI CTRYAG 5 cut(s) 330, 585, 918, 1001, 1077
SinI GGWCC 2 cut(s) 604, 869
SmiMI CAYNNNNRTG 1 cut(s) 977
SmlI CTYRAG 5 cut(s) 36, 134, 188, 1586, 1650
SmoI CTYRAG 5 cut(s) 36, 134, 188, 1586, 1650
SnaBI TACGTA 1 cut(s) 404
Sse9I AATT 9 cut(s) 303, 503, 801, 879, 929, 986, 1125, 1469, 1520
SsiI CCGC 4 cut(s) 119, 436, 602, 1278
SspMI CTAG 8 cut(s) 68, 152, 350, 551, 557, 642, 1101, 1710
SstI GAGCTC 1 cut(s) 1610
StyD4I CCNGG 4 cut(s) 614, 1537, 1699, 1753
StyI CCWWGG 1 cut(s) 813
TaaI ACNGT 4 cut(s) 113, 948, 1357, 1738
TaiI ACGT 2 cut(s) 406, 1086
TaqI TCGA 2 cut(s) 1477, 1791
TasI AATT 9 cut(s) 303, 503, 801, 879, 929, 986, 1125, 1469, 1520
TfiI GAWTC 1 cut(s) 1016
Tru1I TTAA 9 cut(s) 78, 128, 168, 276, 507, 753, 1119, 1239, 1695
Tru9I TTAA 9 cut(s) 78, 128, 168, 276, 507, 753, 1119, 1239, 1695
TscAI CASTG 2 cut(s) 1362, 1690
TseFI GTSAC 3 cut(s) 161, 948, 1778
TseI GCWGC 9 cut(s) 217, 239, 329, 499, 599, 899, 902, 909, 1151
Tsp45I GTSAC 3 cut(s) 161, 948, 1778
TspRI CASTG 2 cut(s) 1362, 1690
VpaK11BI GGWCC 2 cut(s) 604, 869
VspI ATTAAT 1 cut(s) 168
XapI RAATTY 4 cut(s) 303, 986, 1469, 1520
XbaI TCTAGA 1 cut(s) 556
XmiI GTMKAC 1 cut(s) 1080
XmnI GAANNNNTTC 4 cut(s) 530, 1173, 1500, 1797
XspI CTAG 8 cut(s) 68, 152, 350, 551, 557, 642, 1101, 1710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.