Rh4CG214400

U4 U6.U5 tri-snRNP-associated protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Reverse (-)
44433574 .. 44436767
3194 bp
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UTR
Exon/CDS
Intron
Rh4CG214400.1

Sequence Viewer

Length: 1410 bp
ATGTCTGGAAAGATCACATCTGACTACTATACAAATGAAGAAATGCTGCAATTTAAAAAGCCCAAGAAAAAGAAAACCTTCAGGAAGATGGAGAAGCTAGATCTAGATGCCCTTGAAGCAGAAGCCGTATCTGCAGGGCTGGGTGCTGCGGACCTCGGTTCCAGGAAGGATGGAAAGAGGCAGGCCACTAGAGAGGAGCAAGAAAGATTAGAAGCTGAGAAGAGAAATAGTGCATACCAGTTAGCTAAAGATAAAGCAAATGAGGCATCTAAAGCATTGCGACAGGACACTCAATCTGTTAAGGCAGAGGAAGATGAAACTCCTTACTTTGCTGATGATTATGATGAAATTGATAAAGCCTTGGAGAGATCAAGGAAAATAGCTCTACAAAAGAAACAGGAGGAGAAAGTCTCCGGTCCAAAGGCAATTGCTCGCCTTGCCACAGCAGCTGCAAGCAGCACAACTGCAGATGATCAATTCTCGTCAACTGGACAGTCACAGGAAAACAAGGTTGTGTTCACAGAGATGGAAGAATTTGTCTTGGGCCTACAGCTTGAAGAAGAATCCCACAAGCCTGAAAGTGAAGATGTGTTTATGCAAGAAGATGAAGAACCAAAAGCTTCTGTAGACGTAGAAATGGGCGAGCCTAGTGGATGGACTGAAGTTAATGAAATTGAAGAGAACAAAGCACAATCTGCTGCTGATGATAATGAGGAAATAGTTCCAGATGAAACTGTCCATGAAGTTGCAGTTGGGAAAGGTTTATCAGGTGTGCTAAAACTGCTTAAAGAGCGAGGTAATCTCAAAGAAGGTATTGAATGGGGTGGCAGGAACATGGACAAGAAGAAAAGCAAACTTTTAGGCATCATAGATGATGACGAGGATCCAAAGGAGACCCATACAGTGCGTCGGAGAAAGGATGAACAAAAGGATACTCGTTCGTCAGGCCATCAAAAGGAGATGCGTCCTCCTAAAGTCTATCAGGAAAAGGATATTCACATTGAGAGAACTGACGAATTTGGTCGAACTTTGACACCAAAGGAAGCCTTTCGGGGACTTTCACATAAATTTCATGGGAAGGGGCCTGGAAAAATGAAGCAAGAAAAGCGCTTGAAGCAATACCACGAAGAACTCAAGTTGAAGCAGATGAAGAGTTCAGATACACCATCCCTGTCTGTGGAGAGGATGAGGGAAACTCAAGCTCGGTTACAGACACCCTATCTTGTTCTCAGCGGCCATGTTAAACCAGGGCAAACTAGCGATCCCAGAAGTGGTTTTGCTACTGTGGAGAAGGATCTCCCAGGGGGCTTGACGCCTATGCTTGGTGACAGAAAGGTCGAACATTTTCTGGGGATAAAGCGCAAAGATGAAACTGAAAGTTCAGGCACACCGAAGAAGCCAAAAACTTGA

Protein Analysis

469

Amino Acids

52.94

Weight (kDa)

5.81

Isoelectric Point (pI)

47.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SART-1 PF03343 4 - 377 6.9e-45 SART-1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1334
AccI GTMKAC 1 cut(s) 627
AciI CCGC 2 cut(s) 149, 1233
AclWI GGATC 4 cut(s) 878, 891, 1256, 1302
AcoI YGGCCR 1 cut(s) 1234
AcsI RAATTY 3 cut(s) 533, 1016, 1067
AcuI CTGAAG 2 cut(s) 64, 681
AcyI GRCGYC 1 cut(s) 1313
AfeI AGCGCT 1 cut(s) 1109
AfiI CCNNNNNNNGG 4 cut(s) 955, 1177, 1271, 1322
AgsI TTSAA 6 cut(s) 116, 557, 677, 818, 1114, 1141
AjnI CCWGG 4 cut(s) 161, 1084, 1246, 1300
AjuI GAANNNNNNNTTGG 2 cut(s) 735, 767
AluBI AGCT 8 cut(s) 97, 215, 245, 383, 449, 553, 620, 1202
AluI AGCT 8 cut(s) 97, 215, 245, 383, 449, 553, 620, 1202
Alw26I GTCTC 2 cut(s) 415, 887
AlwI GGATC 4 cut(s) 878, 891, 1256, 1302
AlwNI CAGNNNCTG 1 cut(s) 449
Aor51HI AGCGCT 1 cut(s) 1109
AoxI GGCC 5 cut(s) 183, 544, 946, 1082, 1234
ApeKI GCWGC 6 cut(s) 46, 146, 446, 449, 456, 698
ApoI RAATTY 3 cut(s) 533, 1016, 1067
Asp700I GAANNNNTTC 4 cut(s) 77, 720, 1047, 1344
AspLEI GCGC 2 cut(s) 1110, 1362
AspS9I GGNCC 4 cut(s) 151, 416, 544, 1082
AsuHPI GGTGA 1 cut(s) 1337
AvaII GGWCC 2 cut(s) 151, 416
BamHI GGATCC 1 cut(s) 883
BbvI GCAGC 6 cut(s) 33, 133, 436, 458, 468, 685
BccI CCATC 6 cut(s) 82, 164, 520, 648, 957, 1174
BceAI ACGGC 1 cut(s) 110
BciT130I CCWGG 4 cut(s) 163, 1086, 1248, 1302
BciVI GTATCC 1 cut(s) 925
BclI TGATCA 1 cut(s) 472
BcoDI GTCTC 2 cut(s) 415, 887
BfaI CTAG 5 cut(s) 98, 104, 189, 648, 1257
BfmI CTRYAG 4 cut(s) 132, 465, 548, 624
BfoI RGCGCY 1 cut(s) 1111
BfuI GTATCC 1 cut(s) 925
BglII AGATCT 1 cut(s) 100
BisI GCNGC 7 cut(s) 47, 147, 447, 450, 457, 699, 1234
BlsI GCNGC 7 cut(s) 48, 148, 448, 451, 458, 700, 1235
Bme1390I CCNGG 4 cut(s) 163, 1086, 1248, 1302
Bme18I GGWCC 2 cut(s) 151, 416
BmgT120I GGNCC 4 cut(s) 151, 416, 544, 1082
BmiI GGNNCC 3 cut(s) 160, 885, 1083
BmrFI CCNGG 4 cut(s) 163, 1086, 1248, 1302
BmsI GCATC 4 cut(s) 97, 275, 873, 951
BplI GAGNNNNNCTC 6 cut(s) 395, 427, 786, 818, 1180, 1212
BpuEI CTTGAG 2 cut(s) 1118, 1182
BsaHI GRCGYC 1 cut(s) 1313
BsaI GGTCTC 1 cut(s) 887
BsaJI CCNNGG 5 cut(s) 154, 360, 1247, 1300, 1301
BsaWI WCCGGW 1 cut(s) 413
Bsc4I CCNNNNNNNGG 4 cut(s) 955, 1177, 1271, 1322
Bse1I ACTGG 2 cut(s) 238, 493
Bse3DI GCAATG 1 cut(s) 275
BseBI CCWGG 4 cut(s) 163, 1086, 1248, 1302
BseDI CCNNGG 5 cut(s) 154, 360, 1247, 1300, 1301
BseGI GGATG 5 cut(s) 175, 659, 925, 1166, 1191
BseLI CCNNNNNNNGG 4 cut(s) 955, 1177, 1271, 1322
BseMI GCAATG 1 cut(s) 275
BseMII CTCAG 2 cut(s) 207, 1243
BseNI ACTGG 2 cut(s) 238, 493
BseRI GAGGAG 2 cut(s) 209, 416
BseXI GCAGC 6 cut(s) 33, 133, 436, 458, 468, 685
BseYI CCCAGC 1 cut(s) 139
BshFI GGCC 5 cut(s) 185, 546, 948, 1084, 1236
BsiSI CCGG 1 cut(s) 414
BslFI GGGAC 1 cut(s) 1068
BslI CCNNNNNNNGG 4 cut(s) 955, 1177, 1271, 1322
BsmAI GTCTC 2 cut(s) 415, 887
BsmFI GGGAC 1 cut(s) 1068
BsnI GGCC 5 cut(s) 185, 546, 948, 1084, 1236
Bso31I GGTCTC 1 cut(s) 887
Bsp143I GATC 7 cut(s) 12, 100, 368, 472, 883, 1261, 1294
BspACI CCGC 2 cut(s) 149, 1233
BspANI GGCC 5 cut(s) 185, 546, 948, 1084, 1236
BspCNI CTCAG 2 cut(s) 208, 1242
BspLI GGNNCC 3 cut(s) 160, 885, 1083
BspMAI CTGCAG 2 cut(s) 136, 469
BspPI GGATC 4 cut(s) 878, 891, 1256, 1302
BspTNI GGTCTC 1 cut(s) 887
BsrDI GCAATG 1 cut(s) 275
BsrI ACTGG 2 cut(s) 238, 493
BssECI CCNNGG 5 cut(s) 154, 360, 1247, 1300, 1301
BssMI GATC 7 cut(s) 12, 100, 368, 472, 883, 1261, 1294
BssNI GRCGYC 1 cut(s) 1313
BssT1I CCWWGG 1 cut(s) 360
Bst2UI CCWGG 4 cut(s) 163, 1086, 1248, 1302
Bst4CI ACNGT 4 cut(s) 495, 736, 904, 1285
Bst6I CTCTTC 3 cut(s) 215, 672, 1145
BstACI GRCGYC 1 cut(s) 1313
BstAPI GCANNNNNTGC 1 cut(s) 695
BstC8I GCNNGC 4 cut(s) 183, 433, 454, 644
BstDEI CTNAG 2 cut(s) 216, 1229
BstF5I GGATG 5 cut(s) 175, 659, 925, 1166, 1191
BstH2I RGCGCY 1 cut(s) 1111
BstHHI GCGC 2 cut(s) 1110, 1362
BstKTI GATC 7 cut(s) 15, 103, 371, 475, 886, 1264, 1297
BstMAI GTCTC 2 cut(s) 415, 887
BstMBI GATC 7 cut(s) 12, 100, 368, 472, 883, 1261, 1294
BstNI CCWGG 4 cut(s) 163, 1086, 1248, 1302
BstSCI CCNGG 4 cut(s) 161, 1084, 1246, 1300
BstSFI CTRYAG 4 cut(s) 132, 465, 548, 624
BstV1I GCAGC 6 cut(s) 33, 133, 436, 458, 468, 685
BstX2I RGATCY 3 cut(s) 100, 883, 1294
BstYI RGATCY 3 cut(s) 100, 883, 1294
BsuI GTATCC 1 cut(s) 925
BsuRI GGCC 5 cut(s) 185, 546, 948, 1084, 1236
BtsCI GGATG 5 cut(s) 175, 659, 925, 1166, 1191
BtsIMutI CAGTG 1 cut(s) 909
Cac8I GCNNGC 4 cut(s) 183, 433, 454, 644
CaiI CAGNNNCTG 1 cut(s) 449
CfoI GCGC 2 cut(s) 1110, 1362
Cfr13I GGNCC 4 cut(s) 151, 416, 544, 1082
CseI GACGC 3 cut(s) 896, 953, 1321
CviAII CATG 4 cut(s) 740, 835, 1073, 1238
DdeI CTNAG 2 cut(s) 216, 1229
DpnI GATC 7 cut(s) 14, 102, 370, 474, 885, 1263, 1296
DpnII GATC 7 cut(s) 12, 100, 368, 472, 883, 1261, 1294
DraI TTTAAA 1 cut(s) 55
DrdI GACNNNNNNGTC 1 cut(s) 1334
DseDI GACNNNNNNGTC 1 cut(s) 1334
EaeI YGGCCR 1 cut(s) 1234
Eam1104I CTCTTC 3 cut(s) 215, 672, 1145
EarI CTCTTC 3 cut(s) 215, 672, 1145
Eco130I CCWWGG 1 cut(s) 360
Eco31I GGTCTC 1 cut(s) 887
Eco47I GGWCC 2 cut(s) 151, 416
Eco47III AGCGCT 1 cut(s) 1109
Eco57I CTGAAG 2 cut(s) 64, 681
EcoO109I RGGNCCY 1 cut(s) 1082
EcoRII CCWGG 4 cut(s) 161, 1084, 1246, 1300
EcoT14I CCWWGG 1 cut(s) 360
ErhI CCWWGG 1 cut(s) 360
FaeI CATG 4 cut(s) 743, 838, 1076, 1241
FalI AAGNNNNNCTT 4 cut(s) 62, 94, 1031, 1063
FaqI GGGAC 1 cut(s) 1068
FatI CATG 4 cut(s) 739, 834, 1072, 1237
FbaI TGATCA 1 cut(s) 472
FblI GTMKAC 1 cut(s) 627
Fnu4HI GCNGC 7 cut(s) 47, 147, 447, 450, 457, 699, 1234
FokI GGATG 5 cut(s) 182, 666, 932, 1153, 1198
Fsp4HI GCNGC 7 cut(s) 47, 147, 447, 450, 457, 699, 1234
FspBI CTAG 5 cut(s) 98, 104, 189, 648, 1257
GlaI GCGC 2 cut(s) 1109, 1361
GluI GCNGC 7 cut(s) 47, 147, 447, 450, 457, 699, 1234
GsaI CCCAGC 1 cut(s) 143
HaeII RGCGCY 1 cut(s) 1111
HaeIII GGCC 5 cut(s) 185, 546, 948, 1084, 1236
HapII CCGG 1 cut(s) 414
HgaI GACGC 3 cut(s) 896, 953, 1321
HhaI GCGC 2 cut(s) 1110, 1362
Hin1I GRCGYC 1 cut(s) 1313
Hin1II CATG 4 cut(s) 743, 838, 1076, 1241
Hin6I GCGC 2 cut(s) 1108, 1360
HinP1I GCGC 2 cut(s) 1108, 1360
HincII GTYRAC 1 cut(s) 486
HindII GTYRAC 1 cut(s) 486
HindIII AAGCTT 1 cut(s) 618
HinfI GANTC 1 cut(s) 563
HpaII CCGG 1 cut(s) 414
HphI GGTGA 1 cut(s) 1337
Hpy166II GTNNAC 3 cut(s) 486, 519, 628
Hpy188I TCNGA 3 cut(s) 22, 912, 1159
Hpy188III TCNNGA 5 cut(s) 6, 82, 104, 725, 983
Hpy8I GTNNAC 3 cut(s) 486, 519, 628
Hpy99I CGWCG 1 cut(s) 912
HpyAV CCTTC 5 cut(s) 88, 160, 803, 1072, 1285
HpyCH4III ACNGT 4 cut(s) 495, 736, 904, 1285
HpyCH4IV ACGT 1 cut(s) 630
HpyCH4V TGCA 7 cut(s) 49, 134, 233, 452, 467, 598, 749
HpyF3I CTNAG 2 cut(s) 216, 1229
HpySE526I ACGT 1 cut(s) 630
Hsp92I GRCGYC 1 cut(s) 1313
Hsp92II CATG 4 cut(s) 743, 838, 1076, 1241
HspAI GCGC 2 cut(s) 1108, 1360
Ksp22I TGATCA 1 cut(s) 472
Kzo9I GATC 7 cut(s) 12, 100, 368, 472, 883, 1261, 1294
LmnI GCTCC 1 cut(s) 196
Lsp1109I GCAGC 6 cut(s) 33, 133, 436, 458, 468, 685
LweI GCATC 4 cut(s) 97, 275, 873, 951
MaeI CTAG 5 cut(s) 98, 104, 189, 648, 1257
MaeII ACGT 1 cut(s) 630
MaeIII GTNAC 3 cut(s) 495, 1206, 1325
MalI GATC 7 cut(s) 14, 102, 370, 474, 885, 1263, 1296
MboI GATC 7 cut(s) 12, 100, 368, 472, 883, 1261, 1294
MfeI CAATTG 1 cut(s) 426
MflI RGATCY 3 cut(s) 100, 883, 1294
MluCI AATT 8 cut(s) 50, 348, 426, 476, 533, 672, 1016, 1067
MmeI TCCRAC 1 cut(s) 890
MroXI GAANNNNTTC 4 cut(s) 77, 720, 1047, 1344
MseI TTAA 5 cut(s) 54, 300, 666, 786, 1242
MslI CAYNNNNRTG 1 cut(s) 524
MspA1I CMGCKG 2 cut(s) 449, 1233
MspI CCGG 1 cut(s) 414
MspR9I CCNGG 4 cut(s) 163, 1086, 1248, 1302
MunI CAATTG 1 cut(s) 426
MvaI CCWGG 4 cut(s) 163, 1086, 1248, 1302
NdeII GATC 7 cut(s) 12, 100, 368, 472, 883, 1261, 1294
NlaIII CATG 4 cut(s) 743, 838, 1076, 1241
NlaIV GGNNCC 3 cut(s) 160, 885, 1083
NmuCI GTSAC 2 cut(s) 495, 1325
PasI CCCWGGG 1 cut(s) 1301
PdmI GAANNNNTTC 4 cut(s) 77, 720, 1047, 1344
PfeI GAWTC 1 cut(s) 563
PfoI TCCNGGA 1 cut(s) 161
PkrI GCNGC 7 cut(s) 48, 148, 448, 451, 458, 700, 1235
Psp6I CCWGG 4 cut(s) 161, 1084, 1246, 1300
PspFI CCCAGC 1 cut(s) 139
PspGI CCWGG 4 cut(s) 161, 1084, 1246, 1300
PspN4I GGNNCC 3 cut(s) 160, 885, 1083
PspPI GGNCC 4 cut(s) 151, 416, 544, 1082
PstI CTGCAG 2 cut(s) 136, 469
PstNI CAGNNNCTG 1 cut(s) 449
PsuI RGATCY 3 cut(s) 100, 883, 1294
PvuII CAGCTG 1 cut(s) 449
RseI CAYNNNNRTG 1 cut(s) 524
SaqAI TTAA 5 cut(s) 54, 300, 666, 786, 1242
SatI GCNGC 7 cut(s) 47, 147, 447, 450, 457, 699, 1234
Sau3AI GATC 7 cut(s) 12, 100, 368, 472, 883, 1261, 1294
Sau96I GGNCC 4 cut(s) 151, 416, 544, 1082
ScrFI CCNGG 4 cut(s) 163, 1086, 1248, 1302
SfaNI GCATC 4 cut(s) 97, 275, 873, 951
SfcI CTRYAG 4 cut(s) 132, 465, 548, 624
SinI GGWCC 2 cut(s) 151, 416
SmiMI CAYNNNNRTG 1 cut(s) 524
SmlI CTYRAG 2 cut(s) 1133, 1197
SmoI CTYRAG 2 cut(s) 1133, 1197
Sse9I AATT 8 cut(s) 50, 348, 426, 476, 533, 672, 1016, 1067
SsiI CCGC 2 cut(s) 149, 1233
SspMI CTAG 5 cut(s) 98, 104, 189, 648, 1257
StyD4I CCNGG 4 cut(s) 161, 1084, 1246, 1300
StyI CCWWGG 1 cut(s) 360
TaaI ACNGT 4 cut(s) 495, 736, 904, 1285
TaiI ACGT 1 cut(s) 633
TaqI TCGA 2 cut(s) 1024, 1338
TasI AATT 8 cut(s) 50, 348, 426, 476, 533, 672, 1016, 1067
TauI GCSGC 1 cut(s) 1236
TfiI GAWTC 1 cut(s) 563
Tru1I TTAA 5 cut(s) 54, 300, 666, 786, 1242
Tru9I TTAA 5 cut(s) 54, 300, 666, 786, 1242
TscAI CASTG 1 cut(s) 909
TseFI GTSAC 2 cut(s) 495, 1325
TseI GCWGC 6 cut(s) 46, 146, 446, 449, 456, 698
Tsp45I GTSAC 2 cut(s) 495, 1325
TspRI CASTG 1 cut(s) 909
VpaK11BI GGWCC 2 cut(s) 151, 416
XapI RAATTY 3 cut(s) 533, 1016, 1067
XbaI TCTAGA 1 cut(s) 103
XmiI GTMKAC 1 cut(s) 627
XmnI GAANNNNTTC 4 cut(s) 77, 720, 1047, 1344
XspI CTAG 5 cut(s) 98, 104, 189, 648, 1257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.