Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003796

Physical Location & Seq

Genomic Coordinates Forward (+)

22780547 .. 22783541

Gene Structure 2995 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0139200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGAAGTTCAAAGAAACAGATCAGCTCCCTATTCCCTCTCCGTCCCTCTCCCTAACAAGGTGGTGGTCGGAGGAGACAGTAGCGATAGTGACTGGAGCAAACAAAGGAATTGGGTTTGCGCTGGTGAAAAGAATGGCGGAGTTGGGACTGAAGGTGATATTAACAGCTAGAGACACTGAAAGGGGTTGCAAGGCTGTTGAAGCACTTAGGGCTCAAGGTCTCCATAATATTACCTTTTTCTGCCTCGATGTTTCTGATCCTTATTCTATCAAAACCTTCTCATCATGGTTCACAGAAAACTTTGCAGCCTTGGATATTCTTGTGAACAACGCAGCAGTTTCGTTCAACGAAATCAATGAAAACTCAGTGGAACATGCCGAGACAGTAATAAAAACCAATTTCAATGGACCAAAGTTACTGACTGAGGCTCTCTTGCCCATGTTCCGTACCTCATCCATTAGTCGAATACTCAATCTCAGCTCTAGACTTGGTTCCCTAAATAAAGTGGGAAACCCTAGCATAAAAGAGGTTCTAGAAAGCGAGAAACTATCAGAGGATGATATCGAGGCAGTTGTTAGCTTGTTTCTGGAACAAGTGAAGACCGGGATATGGAAGACCGGAGGTTGGCCTGAATTGTGGACGGACTATGCGGTGTCGAAGCTTGCACTGAATGCATACACCAGGGTTTTGGCAAAGCGCTACGAAGGAAGTTTGAGTGTGAATAGCTTCTGTCCCGGCTTTACTCAGACCTCGATGACTCGGTGCAAGGGAGATCACACCGCCGATGATGCGGCCATTGTCGGTGCTAGGCTGGCCTTGCTTCCTCCGGACAAGATACAGAGTGGAAAATTTTTTCTATGGGGTAGTAGCAGCAGTAGTACCAGTAATAATAATGTGGTGGTATCCTCCAAGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0000481 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008380 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009908 GO:0009933 GO:0009965 GO:0009987 GO:0010016 GO:0010051 GO:0010087 GO:0010154 GO:0010305 GO:0010467 GO:0010588 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0022622 GO:0030532 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0046540 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048528 GO:0048532 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0061458 GO:0065003 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090567 GO:0090696 GO:0090698 GO:0097525 GO:0097526 GO:0099402 GO:0120114 GO:1901360 GO:1905392 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SART-1

Protein Analysis

305

Amino Acids

33.45

Weight (kDa)

6.85

Isoelectric Point (pI)

34.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	27 - 166	9.2e-29	short chain dehydrogenase
KR	PF08659	28 - 158	4.8e-08	KR domain
Epimerase	PF01370	29 - 161	2.9e-06	NAD dependent epimerase/dehydratase family
adh_short_C2	PF13561	32 - 162	8.5e-20	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16780 AT5G16780 AT5G16780
fragaria_vesca	FvH4_4g15641 FvH4_4g15641 FvH4_4g15641 FvH4_4g15641
malus_domestica	MD13G1193700.v1.1 MD16G1194300.v1.1
prunus_persica	Prupe.1G014100_v2.0.a1 Prupe.1G014100_v2.0.a1 Prupe.1G014100_v2.0.a1
pyrus_communis	pycom13g16590 pycom16g16410
rosa_chinensis	RchiOBHm_Chr1g0362521 RchiOBHm_Chr4g0416151 RchiOBHm_Chr4g0416161
rosa_laevigata	RLG00000008010
rosa_multiflora	Rmu_co8134734.1_g000001 Rmu_sc0031164.1_g000005 Rmu_sc0034372.1_g000002 Rmu_sc0035291.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360010
rosa_rugosa	Rorug04G0139200 Rorug04G0139300 Rorug04G0139300
rosa_samantha	Rh4AG201400 Rh4BG198700 Rh4BG198900 Rh4CG212600 Rh4CG212700 Rh4CG214400 Rh4DG198800
rosa_wichuraiana	Rw4G017030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	916
AccIII	TCCGGA	1 cut(s)	826
AciI	CCGC	4 cut(s)	137, 650, 780, 791
AclWI	GGATC	1 cut(s)	251
AcoI	YGGCCR	1 cut(s)	792
AcsI	RAATTY	1 cut(s)	848
AcuI	CTGAAG	1 cut(s)	170
AfaI	GTAC	2 cut(s)	448, 880
AfeI	AGCGCT	1 cut(s)	698
AfiI	CCNNNNNNNGG	3 cut(s)	57, 609, 624
AgsI	TTSAA	4 cut(s)	10, 200, 346, 403
AjnI	CCWGG	1 cut(s)	680
AluBI	AGCT	6 cut(s)	25, 167, 480, 579, 661, 726
AluI	AGCT	6 cut(s)	25, 167, 480, 579, 661, 726
Alw26I	GTCTC	4 cut(s)	68, 165, 224, 374
AlwI	GGATC	1 cut(s)	251
Aor13HI	TCCGGA	1 cut(s)	826
Aor51HI	AGCGCT	1 cut(s)	698
AoxI	GGCC	3 cut(s)	626, 792, 813
ApeKI	GCWGC	3 cut(s)	305, 332, 870
ApoI	RAATTY	1 cut(s)	848
Asp700I	GAANNNNTTC	1 cut(s)	725
AspLEI	GCGC	2 cut(s)	121, 699
AspS9I	GGNCC	1 cut(s)	407
AsuC2I	CCSGG	2 cut(s)	604, 735
AsuHPI	GGTGA	2 cut(s)	136, 166
AvaII	GGWCC	1 cut(s)	407
BanII	GRGCYC	1 cut(s)	214
BbsI	GAAGAC	2 cut(s)	605, 620
BbvI	GCAGC	3 cut(s)	317, 344, 882
BcgI	CGANNNNNNTGC	2 cut(s)	321, 355
BciT130I	CCWGG	1 cut(s)	682
BciVI	GTATCC	1 cut(s)	913
BcnI	CCSGG	2 cut(s)	604, 735
BcoDI	GTCTC	4 cut(s)	68, 165, 224, 374
BfaI	CTAG	5 cut(s)	168, 483, 516, 533, 807
BfoI	RGCGCY	1 cut(s)	700
BfuI	GTATCC	1 cut(s)	913
BisI	GCNGC	4 cut(s)	306, 333, 792, 871
BlsI	GCNGC	4 cut(s)	307, 334, 793, 872
Bme1390I	CCNGG	3 cut(s)	604, 682, 735
Bme18I	GGWCC	1 cut(s)	407
BmgT120I	GGNCC	1 cut(s)	407
BmiI	GGNNCC	1 cut(s)	493
BmrFI	CCNGG	3 cut(s)	604, 682, 735
BmsI	GCATC	1 cut(s)	778
BpiI	GAAGAC	2 cut(s)	605, 620
BpmI	CTGGAG	1 cut(s)	114
BpuEI	CTTGAG	1 cut(s)	198
BpuMI	CCSGG	2 cut(s)	604, 735
BsaI	GGTCTC	1 cut(s)	224
BsaJI	CCNNGG	2 cut(s)	309, 681
BsaWI	WCCGGW	2 cut(s)	617, 826
Bsc4I	CCNNNNNNNGG	3 cut(s)	57, 609, 624
Bse1I	ACTGG	2 cut(s)	97, 882
BseAI	TCCGGA	1 cut(s)	826
BseBI	CCWGG	1 cut(s)	682
BseDI	CCNNGG	2 cut(s)	309, 681
BseGI	GGATG	2 cut(s)	452, 562
BseLI	CCNNNNNNNGG	3 cut(s)	57, 609, 624
BseMII	CTCAG	4 cut(s)	378, 414, 490, 758
BseNI	ACTGG	2 cut(s)	97, 882
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	3 cut(s)	317, 344, 882
BshFI	GGCC	3 cut(s)	628, 794, 815
BsiSI	CCGG	4 cut(s)	603, 618, 735, 827
BslFI	GGGAC	3 cut(s)	28, 159, 717
BslI	CCNNNNNNNGG	3 cut(s)	57, 609, 624
BsmAI	GTCTC	4 cut(s)	68, 165, 224, 374
BsmFI	GGGAC	3 cut(s)	28, 159, 717
BsmI	GAATGC	1 cut(s)	676
BsnI	GGCC	3 cut(s)	628, 794, 815
Bso31I	GGTCTC	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp13I	TCCGGA	1 cut(s)	826
Bsp143I	GATC	3 cut(s)	19, 256, 772
BspACI	CCGC	4 cut(s)	137, 650, 780, 791
BspANI	GGCC	3 cut(s)	628, 794, 815
BspCNI	CTCAG	4 cut(s)	377, 415, 489, 757
BspEI	TCCGGA	1 cut(s)	826
BspLI	GGNNCC	1 cut(s)	493
BspPI	GGATC	1 cut(s)	251
BspTNI	GGTCTC	1 cut(s)	224
BsrI	ACTGG	2 cut(s)	97, 882
BssECI	CCNNGG	2 cut(s)	309, 681
BssMI	GATC	3 cut(s)	19, 256, 772
BssT1I	CCWWGG	1 cut(s)	309
Bst2UI	CCWGG	1 cut(s)	682
Bst4CI	ACNGT	2 cut(s)	79, 385
BstAPI	GCANNNNNTGC	1 cut(s)	671
BstC8I	GCNNGC	2 cut(s)	663, 813
BstDEI	CTNAG	5 cut(s)	206, 364, 423, 476, 744
BstF5I	GGATG	2 cut(s)	452, 562
BstH2I	RGCGCY	1 cut(s)	700
BstHHI	GCGC	2 cut(s)	121, 699
BstKTI	GATC	3 cut(s)	22, 259, 775
BstMAI	GTCTC	4 cut(s)	68, 165, 224, 374
BstMBI	GATC	3 cut(s)	19, 256, 772
BstMWI	GCNNNNNNNGC	6 cut(s)	200, 209, 671, 788, 812, 817
BstNI	CCWGG	1 cut(s)	682
BstNSI	RCATGY	1 cut(s)	377
BstSCI	CCNGG	3 cut(s)	602, 680, 733
BstV1I	GCAGC	3 cut(s)	317, 344, 882
BstV2I	GAAGAC	2 cut(s)	605, 620
BstXI	CCANNNNNNTGG	1 cut(s)	688
BsuI	GTATCC	1 cut(s)	913
BsuRI	GGCC	3 cut(s)	628, 794, 815
BtsCI	GGATG	2 cut(s)	452, 562
BtsIMutI	CAGTG	3 cut(s)	174, 372, 665
Cac8I	GCNNGC	2 cut(s)	663, 813
CfoI	GCGC	2 cut(s)	121, 699
Cfr13I	GGNCC	1 cut(s)	407
Csp6I	GTAC	2 cut(s)	447, 879
CviAII	CATG	3 cut(s)	285, 374, 439
CviQI	GTAC	2 cut(s)	447, 879
DdeI	CTNAG	5 cut(s)	206, 364, 423, 476, 744
DpnI	GATC	3 cut(s)	21, 258, 774
DpnII	GATC	3 cut(s)	19, 256, 772
EaeI	YGGCCR	1 cut(s)	792
EciI	GGCGGA	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	309
Eco24I	GRGCYC	1 cut(s)	214
Eco31I	GGTCTC	1 cut(s)	224
Eco32I	GATATC	1 cut(s)	562
Eco47I	GGWCC	1 cut(s)	407
Eco47III	AGCGCT	1 cut(s)	698
Eco57I	CTGAAG	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	680
EcoRV	GATATC	1 cut(s)	562
EcoT14I	CCWWGG	1 cut(s)	309
EcoT22I	ATGCAT	1 cut(s)	676
EcoT38I	GRGCYC	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	3 cut(s)	288, 377, 442
FaqI	GGGAC	3 cut(s)	28, 159, 717
FatI	CATG	3 cut(s)	284, 373, 438
Fnu4HI	GCNGC	4 cut(s)	306, 333, 792, 871
FokI	GGATG	2 cut(s)	439, 569
FriOI	GRGCYC	1 cut(s)	214
Fsp4HI	GCNGC	4 cut(s)	306, 333, 792, 871
FspBI	CTAG	5 cut(s)	168, 483, 516, 533, 807
GlaI	GCGC	2 cut(s)	120, 698
GluI	GCNGC	4 cut(s)	306, 333, 792, 871
GsuI	CTGGAG	1 cut(s)	114
HaeII	RGCGCY	1 cut(s)	700
HaeIII	GGCC	3 cut(s)	628, 794, 815
HapII	CCGG	4 cut(s)	603, 618, 735, 827
HhaI	GCGC	2 cut(s)	121, 699
Hin1II	CATG	3 cut(s)	288, 377, 442
Hin6I	GCGC	2 cut(s)	119, 697
HinP1I	GCGC	2 cut(s)	119, 697
HindIII	AAGCTT	1 cut(s)	659
HinfI	GANTC	1 cut(s)	757
HpaII	CCGG	4 cut(s)	603, 618, 735, 827
HphI	GGTGA	2 cut(s)	136, 166
Hpy166II	GTNNAC	3 cut(s)	291, 325, 639
Hpy188I	TCNGA	4 cut(s)	70, 256, 553, 747
Hpy188III	TCNNGA	4 cut(s)	483, 533, 587, 827
Hpy8I	GTNNAC	3 cut(s)	291, 325, 639
HpyAV	CCTTC	3 cut(s)	145, 286, 698
HpyCH4III	ACNGT	2 cut(s)	79, 385
HpyCH4V	TGCA	5 cut(s)	189, 305, 665, 674, 765
HpyF10VI	GCNNNNNNNGC	6 cut(s)	200, 209, 671, 788, 812, 817
HpyF3I	CTNAG	5 cut(s)	206, 364, 423, 476, 744
Hsp92II	CATG	3 cut(s)	288, 377, 442
HspAI	GCGC	2 cut(s)	119, 697
Kpn2I	TCCGGA	1 cut(s)	826
Kzo9I	GATC	3 cut(s)	19, 256, 772
LmnI	GCTCC	2 cut(s)	30, 95
Lsp1109I	GCAGC	3 cut(s)	317, 344, 882
LweI	GCATC	1 cut(s)	778
MaeI	CTAG	5 cut(s)	168, 483, 516, 533, 807
MaeIII	GTNAC	2 cut(s)	88, 414
MalI	GATC	3 cut(s)	21, 258, 774
MboI	GATC	3 cut(s)	19, 256, 772
MboII	GAAGA	2 cut(s)	610, 625
MhlI	GDGCHC	1 cut(s)	214
MluCI	AATT	4 cut(s)	108, 397, 632, 848
MlyI	GAGTC	1 cut(s)	751
MmeI	TCCRAC	1 cut(s)	48
Mph1103I	ATGCAT	1 cut(s)	676
MroI	TCCGGA	1 cut(s)	826
MroXI	GAANNNNTTC	1 cut(s)	725
MseI	TTAA	1 cut(s)	161
MspI	CCGG	4 cut(s)	603, 618, 735, 827
MspR9I	CCNGG	3 cut(s)	604, 682, 735
Mva1269I	GAATGC	1 cut(s)	676
MvaI	CCWGG	1 cut(s)	682
MwoI	GCNNNNNNNGC	6 cut(s)	200, 209, 671, 788, 812, 817
NciI	CCSGG	2 cut(s)	604, 735
NdeII	GATC	3 cut(s)	19, 256, 772
NlaIII	CATG	3 cut(s)	288, 377, 442
NlaIV	GGNNCC	1 cut(s)	493
NmeAIII	GCCGAG	1 cut(s)	403
NmuCI	GTSAC	1 cut(s)	88
NsiI	ATGCAT	1 cut(s)	676
NspI	RCATGY	1 cut(s)	377
PctI	GAATGC	1 cut(s)	676
PdmI	GAANNNNTTC	1 cut(s)	725
PkrI	GCNGC	4 cut(s)	307, 334, 793, 872
PleI	GAGTC	1 cut(s)	751
PpsI	GAGTC	1 cut(s)	751
PsiI	TTATAA	1 cut(s)	916
Psp6I	CCWGG	1 cut(s)	680
PspGI	CCWGG	1 cut(s)	680
PspN4I	GGNNCC	1 cut(s)	493
PspPI	GGNCC	1 cut(s)	407
RsaI	GTAC	2 cut(s)	448, 880
RsaNI	GTAC	2 cut(s)	447, 879
SaqAI	TTAA	1 cut(s)	161
SatI	GCNGC	4 cut(s)	306, 333, 792, 871
Sau3AI	GATC	3 cut(s)	19, 256, 772
Sau96I	GGNCC	1 cut(s)	407
SchI	GAGTC	1 cut(s)	751
ScrFI	CCNGG	3 cut(s)	604, 682, 735
SduI	GDGCHC	1 cut(s)	214
SfaNI	GCATC	1 cut(s)	778
SinI	GGWCC	1 cut(s)	407
SmlI	CTYRAG	1 cut(s)	213
SmoI	CTYRAG	1 cut(s)	213
Sse9I	AATT	4 cut(s)	108, 397, 632, 848
SsiI	CCGC	4 cut(s)	137, 650, 780, 791
SspI	AATATT	1 cut(s)	229
SspMI	CTAG	5 cut(s)	168, 483, 516, 533, 807
StyD4I	CCNGG	3 cut(s)	602, 680, 733
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	2 cut(s)	79, 385
TaqI	TCGA	5 cut(s)	246, 463, 564, 656, 752
TasI	AATT	4 cut(s)	108, 397, 632, 848
TauI	GCSGC	1 cut(s)	794
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TscAI	CASTG	3 cut(s)	181, 372, 672
TseFI	GTSAC	1 cut(s)	88
TseI	GCWGC	3 cut(s)	305, 332, 870
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	2 cut(s)	17, 372
TspGWI	ACGGA	3 cut(s)	30, 434, 656
TspRI	CASTG	3 cut(s)	181, 372, 672
VpaK11BI	GGWCC	1 cut(s)	407
XapI	RAATTY	1 cut(s)	848
XbaI	TCTAGA	2 cut(s)	482, 532
XceI	RCATGY	1 cut(s)	377
XmnI	GAANNNNTTC	1 cut(s)	725
XspI	CTAG	5 cut(s)	168, 483, 516, 533, 807
Zsp2I	ATGCAT	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.