Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8137268.1

Orthogroup ID

OG0006942

Physical Location & Seq

Genomic Coordinates Forward (+)

122 .. 636

Gene Structure 515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8137268.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 515 bp

atgtcaagcgtaaaattcaagaaccctttggtgaggaagagctccggaggaacccaactgaatcacctgaacaagtacagatcatcatcatcatcaccaaactttttgaaggagacctgctgctccattgagaaaaggacgcagtttcagggtagtccccgcttttcttcggaatcaagttattgcagcactagtaattcaacgccaaactctgctcacaagtcagcaagactgtccagaacaaaatccaagactcgtgtgcttcggaacaggtctggaatgtctgaatctccagacttgggggtgcaaagagctacatgctcttcggctctcaagcattccaagtcccctcctgaggtgaaggatcttcatgcagaaggaagtgaatctgaaggagcttcagccaccatgccttgtccattcacttattgttctcttcatggtcatcgccacgccactgtacctccactcaagagcctcatttcgataaggaggcgcttgttgaagactcagaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaM_binding

Protein Analysis

171

Amino Acids

18.77

Weight (kDa)

10.27

Isoelectric Point (pI)

66.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006942)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g24980 FvH4_6g24980 FvH4_6g24980 FvH4_6g24980 FvH4_6g24980
malus_domestica	MD12G1087500.v1.1 MD14G1082900.v1.1
prunus_persica	Prupe.7G047600_v2.0.a1 Prupe.7G047600_v2.0.a1
pyrus_communis	pycom12g07530
rosa_chinensis	RchiOBHm_Chr2g0124711
rosa_laevigata	RLG00000018816
rosa_multiflora	Rmu_co8137268.1_g000001 Rmu_co8184604.1_g000001 Rmu_co8188110.1_g000001 Rmu_co8448307.1_g000001 Rmu_sc0007057.1_g000004 Rmu_sc0042199.1_g000001 Rmu_sc0042237.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119720
rosa_rugosa	Rorug02G0252000
rosa_samantha	Rh2AG311000 Rh2BG319500 Rh2CG298400 Rh2DG335100
rosa_wichuraiana	Rw2G025160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	125
AccIII	TCCGGA	1 cut(s)	44
AciI	CCGC	1 cut(s)	160
AclWI	GGATC	1 cut(s)	372
AcsI	RAATTY	1 cut(s)	14
AcuI	CTGAAG	2 cut(s)	384, 411
AfaI	GTAC	2 cut(s)	77, 462
AfiI	CCNNNNNNNGG	2 cut(s)	299, 355
AgsI	TTSAA	4 cut(s)	19, 109, 201, 505
AhlI	ACTAGT	1 cut(s)	191
AluBI	AGCT	3 cut(s)	42, 314, 398
AluI	AGCT	3 cut(s)	42, 314, 398
Alw21I	GWGCWC	1 cut(s)	44
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	1 cut(s)	372
Aor13HI	TCCGGA	1 cut(s)	44
ApeKI	GCWGC	2 cut(s)	120, 186
ApoI	RAATTY	1 cut(s)	14
AspLEI	GCGC	1 cut(s)	498
AsuHPI	GGTGA	4 cut(s)	43, 56, 87, 370
AxyI	CCTNAGG	1 cut(s)	354
BanII	GRGCYC	1 cut(s)	44
BauI	CACGAG	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	44
BbvI	GCAGC	2 cut(s)	107, 198
BcoDI	GTCTC	1 cut(s)	107
BcuI	ACTAGT	1 cut(s)	191
BfaI	CTAG	1 cut(s)	192
BfoI	RGCGCY	1 cut(s)	499
BfuAI	ACCTGC	1 cut(s)	125
BisI	GCNGC	2 cut(s)	121, 187
BlsI	GCNGC	2 cut(s)	122, 188
BmiI	GGNNCC	1 cut(s)	52
BpmI	CTGGAG	1 cut(s)	276
BpuEI	CTTGAG	2 cut(s)	317, 455
BsaBI	GATNNNNATC	1 cut(s)	85
BsaI	GGTCTC	1 cut(s)	107
BsaWI	WCCGGW	1 cut(s)	44
BsaXI	ACNNNNNCTCC	2 cut(s)	448, 478
Bsc4I	CCNNNNNNNGG	2 cut(s)	299, 355
Bse21I	CCTNAGG	1 cut(s)	354
Bse8I	GATNNNNATC	1 cut(s)	85
BseAI	TCCGGA	1 cut(s)	44
BseJI	GATNNNNATC	1 cut(s)	85
BseLI	CCNNNNNNNGG	2 cut(s)	299, 355
BseMII	CTCAG	1 cut(s)	345
BseXI	GCAGC	2 cut(s)	107, 198
BsiHKAI	GWGCWC	1 cut(s)	44
BsiSI	CCGG	1 cut(s)	45
BslFI	GGGAC	2 cut(s)	141, 331
BslI	CCNNNNNNNGG	2 cut(s)	299, 355
BsmAI	GTCTC	1 cut(s)	107
BsmFI	GGGAC	2 cut(s)	141, 331
BsmI	GAATGC	1 cut(s)	337
Bso31I	GGTCTC	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp13I	TCCGGA	1 cut(s)	44
Bsp143I	GATC	2 cut(s)	80, 364
BspACI	CCGC	1 cut(s)	160
BspCNI	CTCAG	1 cut(s)	346
BspEI	TCCGGA	1 cut(s)	44
BspLI	GGNNCC	1 cut(s)	52
BspMI	ACCTGC	1 cut(s)	125
BspPI	GGATC	1 cut(s)	372
BspQI	GCTCTTC	2 cut(s)	32, 328
BspTNI	GGTCTC	1 cut(s)	107
BssMI	GATC	2 cut(s)	80, 364
BssSI	CACGAG	1 cut(s)	255
Bst2BI	CACGAG	1 cut(s)	255
Bst4CI	ACNGT	2 cut(s)	234, 460
Bst6I	CTCTTC	3 cut(s)	32, 328, 441
BstDEI	CTNAG	2 cut(s)	354, 510
BstH2I	RGCGCY	1 cut(s)	499
BstHHI	GCGC	1 cut(s)	498
BstKTI	GATC	2 cut(s)	83, 367
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	2 cut(s)	80, 364
BstNSI	RCATGY	1 cut(s)	321
BstV1I	GCAGC	2 cut(s)	107, 198
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
Bsu36I	CCTNAGG	1 cut(s)	354
BtgZI	GCGATG	1 cut(s)	431
BtsIMutI	CAGTG	1 cut(s)	456
BveI	ACCTGC	1 cut(s)	125
CfoI	GCGC	1 cut(s)	498
CseI	GACGC	1 cut(s)	148
Csp6I	GTAC	2 cut(s)	76, 461
CviAII	CATG	4 cut(s)	318, 371, 409, 440
CviJI	RGCY	6 cut(s)	42, 314, 329, 398, 404, 477
CviKI_1	RGCY	6 cut(s)	42, 314, 329, 398, 404, 477
CviQI	GTAC	2 cut(s)	76, 461
DdeI	CTNAG	2 cut(s)	354, 510
DpnI	GATC	2 cut(s)	82, 366
DpnII	GATC	2 cut(s)	80, 364
Eam1104I	CTCTTC	3 cut(s)	32, 328, 441
EarI	CTCTTC	3 cut(s)	32, 328, 441
Ecl136II	GAGCTC	1 cut(s)	42
Eco24I	GRGCYC	1 cut(s)	44
Eco31I	GGTCTC	1 cut(s)	107
Eco53kI	GAGCTC	1 cut(s)	42
Eco57I	CTGAAG	2 cut(s)	384, 411
Eco81I	CCTNAGG	1 cut(s)	354
EcoICRI	GAGCTC	1 cut(s)	42
EcoT38I	GRGCYC	1 cut(s)	44
FaeI	CATG	4 cut(s)	321, 374, 412, 443
FaiI	YATR	4 cut(s)	319, 372, 410, 441
FaqI	GGGAC	2 cut(s)	141, 331
FatI	CATG	4 cut(s)	317, 370, 408, 439
FauI	CCCGC	1 cut(s)	167
Fnu4HI	GCNGC	2 cut(s)	121, 187
FriOI	GRGCYC	1 cut(s)	44
Fsp4HI	GCNGC	2 cut(s)	121, 187
FspBI	CTAG	1 cut(s)	192
GlaI	GCGC	1 cut(s)	497
GluI	GCNGC	2 cut(s)	121, 187
GsuI	CTGGAG	1 cut(s)	276
HaeII	RGCGCY	1 cut(s)	499
HapII	CCGG	1 cut(s)	45
HgaI	GACGC	1 cut(s)	148
HhaI	GCGC	1 cut(s)	498
Hin1II	CATG	4 cut(s)	321, 374, 412, 443
Hin6I	GCGC	1 cut(s)	496
HinP1I	GCGC	1 cut(s)	496
HinfI	GANTC	6 cut(s)	61, 173, 253, 287, 386, 508
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	4 cut(s)	43, 56, 87, 370
Hpy188I	TCNGA	5 cut(s)	172, 267, 286, 391, 513
Hpy188III	TCNNGA	7 cut(s)	19, 45, 237, 276, 293, 353, 472
HpyAV	CCTTC	4 cut(s)	103, 355, 371, 386
HpyCH4III	ACNGT	2 cut(s)	234, 460
HpyCH4V	TGCA	3 cut(s)	186, 307, 374
HpyF3I	CTNAG	2 cut(s)	354, 510
Hsp92II	CATG	4 cut(s)	321, 374, 412, 443
HspAI	GCGC	1 cut(s)	496
Kpn2I	TCCGGA	1 cut(s)	44
Kzo9I	GATC	2 cut(s)	80, 364
LguI	GCTCTTC	2 cut(s)	32, 328
LmnI	GCTCC	3 cut(s)	47, 128, 395
LpnPI	CCDG	9 cut(s)	58, 80, 130, 134, 250, 256, 261, 306, 366
Lsp1109I	GCAGC	2 cut(s)	107, 198
MaeI	CTAG	1 cut(s)	192
MalI	GATC	2 cut(s)	82, 366
MboI	GATC	2 cut(s)	80, 364
MboII	GAAGA	5 cut(s)	49, 159, 315, 359, 428
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	1 cut(s)	44
MluCI	AATT	2 cut(s)	14, 196
MlyI	GAGTC	2 cut(s)	247, 502
MnlI	CCTC	7 cut(s)	27, 41, 349, 360, 474, 486, 488
MroI	TCCGGA	1 cut(s)	44
MspI	CCGG	1 cut(s)	45
Mva1269I	GAATGC	1 cut(s)	337
NdeII	GATC	2 cut(s)	80, 364
NlaIII	CATG	4 cut(s)	321, 374, 412, 443
NlaIV	GGNNCC	1 cut(s)	52
NspI	RCATGY	1 cut(s)	321
PciSI	GCTCTTC	2 cut(s)	32, 328
PctI	GAATGC	1 cut(s)	337
PfeI	GAWTC	4 cut(s)	61, 173, 287, 386
PkrI	GCNGC	2 cut(s)	122, 188
PleI	GAGTC	2 cut(s)	247, 502
PpsI	GAGTC	2 cut(s)	247, 502
Psp124BI	GAGCTC	1 cut(s)	44
PspN4I	GGNNCC	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	364
RsaI	GTAC	2 cut(s)	77, 462
RsaNI	GTAC	2 cut(s)	76, 461
SacI	GAGCTC	1 cut(s)	44
SapI	GCTCTTC	2 cut(s)	32, 328
SatI	GCNGC	2 cut(s)	121, 187
Sau3AI	GATC	2 cut(s)	80, 364
SchI	GAGTC	2 cut(s)	247, 502
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	8 cut(s)	44, 69, 119, 275, 316, 360, 400, 466
SmlI	CTYRAG	2 cut(s)	332, 470
SmoI	CTYRAG	2 cut(s)	332, 470
SpeI	ACTAGT	1 cut(s)	191
Sse9I	AATT	2 cut(s)	14, 196
SsiI	CCGC	1 cut(s)	160
SspMI	CTAG	1 cut(s)	192
SstI	GAGCTC	1 cut(s)	44
TaaI	ACNGT	2 cut(s)	234, 460
TaqI	TCGA	1 cut(s)	485
TasI	AATT	2 cut(s)	14, 196
TatI	WGTACW	1 cut(s)	75
TfiI	GAWTC	4 cut(s)	61, 173, 287, 386
TscAI	CASTG	1 cut(s)	463
TseI	GCWGC	2 cut(s)	120, 186
TspDTI	ATGAA	2 cut(s)	359, 428
TspRI	CASTG	1 cut(s)	463
XapI	RAATTY	1 cut(s)	14
XceI	RCATGY	1 cut(s)	321
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.