Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8184604.1

Orthogroup ID

OG0006942

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 690

Gene Structure 690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8184604.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ctcagttaccggaagccacattacctacccttggatcctgacccagaggcagaaaaaattaatctacggcggcaggaaattgatgacaaaaagagtgctgatgaatggatgcttgattacgcacttcaaaaggtgatatctaagctacctccatctcaacaaagaagagtggcattacttgtagaagcttttgaaacagttctccctttccctgatattagaactgaccagaggtccaaatcaatagattcgactgcagcagatcttcaagcctgcaatggcttgccagttcaaaatgctgatgaaactggtaaagagagtgattctggaacttctgccaaaatcttgtttgggagtatgtcatgtcctgaagaaaatttaagtaagtgtacagataagttcattgatgttaaaatggatcaacagcgaagtccagttaaatctcttatgctcaatgaatcaagtgcagaagactgttccactaaaacagaagtcgatatacctgcttttggagccacggatgaggaccagcaggggacacatgtttatatcaagaatggtgatggggaggagacagtcttttccattgaccatacagagtttcccaatgtttcttcatcagaaagtaaagatccccagttctgtaaagaaacctctttgaagcaagaggaagatggtagcaccagttat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaM_binding

Protein Analysis

230

Amino Acids

25.65

Weight (kDa)

4.54

Isoelectric Point (pI)

62.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006942)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g24980 FvH4_6g24980 FvH4_6g24980 FvH4_6g24980 FvH4_6g24980
malus_domestica	MD12G1087500.v1.1 MD14G1082900.v1.1
prunus_persica	Prupe.7G047600_v2.0.a1 Prupe.7G047600_v2.0.a1
pyrus_communis	pycom12g07530
rosa_chinensis	RchiOBHm_Chr2g0124711
rosa_laevigata	RLG00000018816
rosa_multiflora	Rmu_co8137268.1_g000001 Rmu_co8184604.1_g000001 Rmu_co8188110.1_g000001 Rmu_co8448307.1_g000001 Rmu_sc0007057.1_g000004 Rmu_sc0042199.1_g000001 Rmu_sc0042237.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119720
rosa_rugosa	Rorug02G0252000
rosa_samantha	Rh2AG311000 Rh2BG319500 Rh2CG298400 Rh2DG335100
rosa_wichuraiana	Rw2G025160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	511
AciI	CCGC	1 cut(s)	70
AclWI	GGATC	4 cut(s)	29, 42, 426, 626
AcsI	RAATTY	1 cut(s)	376
AcuI	CTGAAG	1 cut(s)	390
AfaI	GTAC	1 cut(s)	391
AfiI	CCNNNNNNNGG	2 cut(s)	31, 509
AflIII	ACRYGT	1 cut(s)	541
AgsI	TTSAA	5 cut(s)	128, 194, 269, 293, 661
AhdI	GACNNNNNGTC	1 cut(s)	232
AluBI	AGCT	2 cut(s)	145, 188
AluI	AGCT	2 cut(s)	145, 188
Alw26I	GTCTC	1 cut(s)	566
AlwI	GGATC	4 cut(s)	29, 42, 426, 626
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	1 cut(s)	376
AseI	ATTAAT	1 cut(s)	60
Asp700I	GAANNNNTTC	1 cut(s)	198
AspS9I	GGNCC	2 cut(s)	234, 526
AsuHPI	GGTGA	2 cut(s)	145, 572
AvaII	GGWCC	2 cut(s)	234, 526
BamHI	GGATCC	1 cut(s)	34
BarI	GAAGNNNNNNTAC	3 cut(s)	37, 483, 515
BbsI	GAAGAC	1 cut(s)	477
BbvI	GCAGC	1 cut(s)	269
BccI	CCATC	3 cut(s)	160, 557, 668
BceAI	ACGGC	1 cut(s)	83
BcgI	CGANNNNNNTGC	2 cut(s)	485, 519
BcoDI	GTCTC	1 cut(s)	566
BfmI	CTRYAG	1 cut(s)	255
BfuAI	ACCTGC	1 cut(s)	511
BglII	AGATCT	1 cut(s)	262
BisI	GCNGC	2 cut(s)	71, 258
BlsI	GCNGC	2 cut(s)	72, 259
Bme18I	GGWCC	2 cut(s)	234, 526
BmeRI	GACNNNNNGTC	1 cut(s)	232
BmgT120I	GGNCC	2 cut(s)	234, 526
BmiI	GGNNCC	2 cut(s)	36, 514
BmrI	ACTGGG	1 cut(s)	631
BmsI	GCATC	1 cut(s)	99
BmuI	ACTGGG	1 cut(s)	631
BpiI	GAAGAC	1 cut(s)	477
BsaJI	CCNNGG	2 cut(s)	30, 516
BsaWI	WCCGGW	1 cut(s)	9
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 509
Bse1I	ACTGG	5 cut(s)	287, 313, 434, 637, 684
Bse3DI	GCAATG	1 cut(s)	283
BseDI	CCNNGG	2 cut(s)	30, 516
BseGI	GGATG	2 cut(s)	114, 526
BseLI	CCNNNNNNNGG	2 cut(s)	31, 509
BseMI	GCAATG	1 cut(s)	283
BseMII	CTCAG	1 cut(s)	16
BseNI	ACTGG	5 cut(s)	287, 313, 434, 637, 684
BseRI	GAGGAG	1 cut(s)	584
BseXI	GCAGC	1 cut(s)	269
BsgI	GTGCAG	1 cut(s)	486
BsiSI	CCGG	1 cut(s)	10
BslFI	GGGAC	1 cut(s)	550
BslI	CCNNNNNNNGG	2 cut(s)	31, 509
BsmAI	GTCTC	1 cut(s)	566
BsmFI	GGGAC	1 cut(s)	550
Bsp1407I	TGTACA	1 cut(s)	389
Bsp143I	GATC	4 cut(s)	34, 262, 418, 631
BspACI	CCGC	1 cut(s)	70
BspCNI	CTCAG	1 cut(s)	15
BspLI	GGNNCC	2 cut(s)	36, 514
BspMAI	CTGCAG	1 cut(s)	259
BspMI	ACCTGC	1 cut(s)	511
BspPI	GGATC	4 cut(s)	29, 42, 426, 626
BsrDI	GCAATG	1 cut(s)	283
BsrGI	TGTACA	1 cut(s)	389
BsrI	ACTGG	5 cut(s)	287, 313, 434, 637, 684
BssECI	CCNNGG	2 cut(s)	30, 516
BssMI	GATC	4 cut(s)	34, 262, 418, 631
BssT1I	CCWWGG	1 cut(s)	30
Bst4CI	ACNGT	3 cut(s)	199, 476, 577
Bst6I	CTCTTC	1 cut(s)	160
BstAUI	TGTACA	1 cut(s)	389
BstC8I	GCNNGC	2 cut(s)	274, 284
BstDEI	CTNAG	2 cut(s)	2, 141
BstDSI	CCRYGG	1 cut(s)	516
BstF5I	GGATG	2 cut(s)	114, 526
BstKTI	GATC	4 cut(s)	37, 265, 421, 634
BstMAI	GTCTC	1 cut(s)	566
BstMBI	GATC	4 cut(s)	34, 262, 418, 631
BstMWI	GCNNNNNNNGC	1 cut(s)	512
BstNSI	RCATGY	1 cut(s)	545
BstSFI	CTRYAG	1 cut(s)	255
BstV1I	GCAGC	1 cut(s)	269
BstV2I	GAAGAC	1 cut(s)	477
BstX2I	RGATCY	3 cut(s)	34, 262, 631
BstYI	RGATCY	3 cut(s)	34, 262, 631
BtgI	CCRYGG	1 cut(s)	516
BtsCI	GGATG	2 cut(s)	114, 526
BveI	ACCTGC	1 cut(s)	511
Cac8I	GCNNGC	2 cut(s)	274, 284
Cfr13I	GGNCC	2 cut(s)	234, 526
Csp6I	GTAC	1 cut(s)	390
CviAII	CATG	2 cut(s)	363, 542
CviJI	RGCY	6 cut(s)	16, 145, 188, 272, 282, 515
CviKI_1	RGCY	6 cut(s)	16, 145, 188, 272, 282, 515
CviQI	GTAC	1 cut(s)	390
DdeI	CTNAG	2 cut(s)	2, 141
DpnI	GATC	4 cut(s)	36, 264, 420, 633
DpnII	GATC	4 cut(s)	34, 262, 418, 631
DriI	GACNNNNNGTC	1 cut(s)	232
Eam1104I	CTCTTC	1 cut(s)	160
Eam1105I	GACNNNNNGTC	1 cut(s)	232
EarI	CTCTTC	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	30
Eco32I	GATATC	1 cut(s)	138
Eco47I	GGWCC	2 cut(s)	234, 526
Eco57I	CTGAAG	1 cut(s)	390
EcoRV	GATATC	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	30
FaeI	CATG	2 cut(s)	366, 545
FaiI	YATR	7 cut(s)	359, 364, 449, 500, 543, 549, 594
FaqI	GGGAC	1 cut(s)	550
FatI	CATG	2 cut(s)	362, 541
Fnu4HI	GCNGC	2 cut(s)	71, 258
FokI	GGATG	2 cut(s)	121, 533
Fsp4HI	GCNGC	2 cut(s)	71, 258
GluI	GCNGC	2 cut(s)	71, 258
HapII	CCGG	1 cut(s)	10
Hin1II	CATG	2 cut(s)	366, 545
HindIII	AAGCTT	1 cut(s)	186
HinfI	GANTC	3 cut(s)	248, 323, 458
HpaII	CCGG	1 cut(s)	10
HphI	GGTGA	2 cut(s)	145, 572
Hpy166II	GTNNAC	1 cut(s)	390
Hpy188I	TCNGA	1 cut(s)	622
Hpy188III	TCNNGA	4 cut(s)	38, 327, 368, 553
Hpy8I	GTNNAC	1 cut(s)	390
HpyCH4III	ACNGT	3 cut(s)	199, 476, 577
HpyCH4V	TGCA	3 cut(s)	257, 276, 467
HpyF10VI	GCNNNNNNNGC	1 cut(s)	512
HpyF3I	CTNAG	2 cut(s)	2, 141
Hsp92II	CATG	2 cut(s)	366, 545
Kzo9I	GATC	4 cut(s)	34, 262, 418, 631
LmnI	GCTCC	1 cut(s)	512
Lsp1109I	GCAGC	1 cut(s)	269
LweI	GCATC	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	4 cut(s)	36, 264, 420, 633
MboI	GATC	4 cut(s)	34, 262, 418, 631
MboII	GAAGA	6 cut(s)	177, 257, 383, 482, 606, 683
MflI	RGATCY	3 cut(s)	34, 262, 631
MluCI	AATT	3 cut(s)	57, 78, 376
MnlI	CCTC	7 cut(s)	40, 159, 225, 517, 562, 661, 664
MroXI	GAANNNNTTC	1 cut(s)	198
MseI	TTAA	4 cut(s)	60, 380, 411, 438
MspI	CCGG	1 cut(s)	10
MwoI	GCNNNNNNNGC	1 cut(s)	512
NdeII	GATC	4 cut(s)	34, 262, 418, 631
NlaIII	CATG	2 cut(s)	366, 545
NlaIV	GGNNCC	2 cut(s)	36, 514
NspI	RCATGY	1 cut(s)	545
PciI	ACATGT	1 cut(s)	541
PdmI	GAANNNNTTC	1 cut(s)	198
PfeI	GAWTC	3 cut(s)	248, 323, 458
PkrI	GCNGC	2 cut(s)	72, 259
PscI	ACATGT	1 cut(s)	541
PshBI	ATTAAT	1 cut(s)	60
PspN4I	GGNNCC	2 cut(s)	36, 514
PspPI	GGNCC	2 cut(s)	234, 526
PstI	CTGCAG	1 cut(s)	259
PsuI	RGATCY	3 cut(s)	34, 262, 631
RsaI	GTAC	1 cut(s)	391
RsaNI	GTAC	1 cut(s)	390
SaqAI	TTAA	4 cut(s)	60, 380, 411, 438
SatI	GCNGC	2 cut(s)	71, 258
Sau3AI	GATC	4 cut(s)	34, 262, 418, 631
Sau96I	GGNCC	2 cut(s)	234, 526
SetI	ASST	8 cut(s)	27, 135, 147, 151, 190, 236, 505, 656
SfaNI	GCATC	1 cut(s)	99
SfcI	CTRYAG	1 cut(s)	255
SinI	GGWCC	2 cut(s)	234, 526
Sse9I	AATT	3 cut(s)	57, 78, 376
SsiI	CCGC	1 cut(s)	70
StyI	CCWWGG	1 cut(s)	30
TaaI	ACNGT	3 cut(s)	199, 476, 577
TaqI	TCGA	2 cut(s)	251, 495
TasI	AATT	3 cut(s)	57, 78, 376
TatI	WGTACW	1 cut(s)	389
TauI	GCSGC	1 cut(s)	73
TfiI	GAWTC	3 cut(s)	248, 323, 458
Tru1I	TTAA	4 cut(s)	60, 380, 411, 438
Tru9I	TTAA	4 cut(s)	60, 380, 411, 438
TseI	GCWGC	1 cut(s)	257
TspDTI	ATGAA	5 cut(s)	117, 318, 391, 471, 606
TspGWI	ACGGA	1 cut(s)	533
VpaK11BI	GGWCC	2 cut(s)	234, 526
VspI	ATTAAT	1 cut(s)	60
XapI	RAATTY	1 cut(s)	376
XceI	RCATGY	1 cut(s)	545
XmnI	GAANNNNTTC	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.