Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007057.1

Orthogroup ID

OG0006942

Physical Location & Seq

Genomic Coordinates Forward (+)

14332 .. 15393

Gene Structure 1062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007057.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

atgaattccgatgtggaaagcagcaatggtgcagaatcagatttgtgtgagaaaacgggggtctctttagctcccataaggtaccctgaggtgccaatggtagcaacagaaggatcaaatggaggaggaaccagtgcaaaatctggattctttcaaggatcctctccacctgaagagtctcattcggagagcaatgctgatgtaacgcatgtcactcagttggaaaaacagaactacacaaggctatggtactttgtatataagcacatggtatcaagcattgctgaaaaagatggagatgaagcacatgatggtgcagatgaggaacaaggaattgacaccaacacattgcctcgagcagaggtggatcgagagctgaacttgacaaatcagcatgcagacaacaaaaagaatgaactccgccgtattgaaactgtcaaaatggtggagaaagcaattgatgaaatacttcttccagaaaaccaggatgaatcagaagacgatcaatcaaacaacagagacttaatttcagaccaggaaccaccagaaaataaagttggcatagaaggaaaatctttcgcaactttttcctactttgccaaagatagcttcagagagtccaaaaagaaagcaggggaagatccaaaacaaatattgctcaaatctgataatgctgtcattgaggatgtagagaaggaagtgctgatggtagaagagaaacctaaacagaaaatgtcaaagaactggagaaatctgaagaaaatgattctgcttaataggtttatcaaggcattagagaaaggaaagaagtccaacccacgagggccaaaatatctgctcttggagcctgaccccgaaacagaaaaagttaatctaaagcatcaaaacatggatgagaggaagaatgctgaggagtggatgcttgattatgcacttcaaaaggctgttgctaaattaactccagctcggaatagaaaagtagcactgcttgttgaggcttttgaaacagttattccaaataatggaatcccaaacccgttcaagccagaagtcatttgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaM_binding

Protein Analysis

353

Amino Acids

39.85

Weight (kDa)

5.09

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006942)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g24980 FvH4_6g24980 FvH4_6g24980 FvH4_6g24980 FvH4_6g24980
malus_domestica	MD12G1087500.v1.1 MD14G1082900.v1.1
prunus_persica	Prupe.7G047600_v2.0.a1 Prupe.7G047600_v2.0.a1
pyrus_communis	pycom12g07530
rosa_chinensis	RchiOBHm_Chr2g0124711
rosa_laevigata	RLG00000018816
rosa_multiflora	Rmu_co8137268.1_g000001 Rmu_co8184604.1_g000001 Rmu_co8188110.1_g000001 Rmu_co8448307.1_g000001 Rmu_sc0007057.1_g000004 Rmu_sc0042199.1_g000001 Rmu_sc0042237.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119720
rosa_rugosa	Rorug02G0252000
rosa_samantha	Rh2AG311000 Rh2BG319500 Rh2CG298400 Rh2DG335100
rosa_wichuraiana	Rw2G025160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	81
AccB1I	GGYRCC	2 cut(s)	81, 91
AccB7I	CCANNNNNTGG	1 cut(s)	1022
AciI	CCGC	1 cut(s)	421
AclWI	GGATC	5 cut(s)	121, 153, 166, 375, 635
AcsI	RAATTY	1 cut(s)	4
AcuI	CTGAAG	3 cut(s)	192, 595, 776
AfaI	GTAC	2 cut(s)	83, 251
AfiI	CCNNNNNNNGG	1 cut(s)	1022
AgsI	TTSAA	5 cut(s)	155, 431, 938, 1004, 1042
AjnI	CCWGG	2 cut(s)	483, 534
AjuI	GAANNNNNNNTTGG	4 cut(s)	540, 572, 593, 625
AluBI	AGCT	4 cut(s)	71, 376, 609, 965
AluI	AGCT	4 cut(s)	71, 376, 609, 965
Alw26I	GTCTC	3 cut(s)	67, 183, 513
AlwI	GGATC	5 cut(s)	121, 153, 166, 375, 635
Ama87I	CYCGRG	1 cut(s)	354
AoxI	GGCC	1 cut(s)	824
ApeKI	GCWGC	1 cut(s)	21
ApoI	RAATTY	1 cut(s)	4
Asp700I	GAANNNNTTC	1 cut(s)	468
Asp718I	GGTACC	1 cut(s)	81
AspS9I	GGNCC	1 cut(s)	824
AvaI	CYCGRG	1 cut(s)	354
AxyI	CCTNAGG	1 cut(s)	87
BamHI	GGATCC	1 cut(s)	158
BanI	GGYRCC	2 cut(s)	81, 91
BauI	CACGAG	1 cut(s)	819
BbsI	GAAGAC	1 cut(s)	504
BbvCI	CCTCAGC	1 cut(s)	909
BbvI	GCAGC	1 cut(s)	33
BccI	CCATC	3 cut(s)	287, 305, 700
BceAI	ACGGC	1 cut(s)	408
BciT130I	CCWGG	2 cut(s)	485, 536
BcoDI	GTCTC	3 cut(s)	67, 183, 513
BisI	GCNGC	1 cut(s)	22
BlsI	GCNGC	1 cut(s)	23
Bme1390I	CCNGG	2 cut(s)	485, 536
BmeT110I	CYCGRG	1 cut(s)	354
BmgT120I	GGNCC	1 cut(s)	824
BmiI	GGNNCC	6 cut(s)	83, 93, 130, 160, 540, 846
BmrFI	CCNGG	2 cut(s)	485, 536
BmsI	GCATC	2 cut(s)	889, 909
BpiI	GAAGAC	1 cut(s)	504
BpmI	CTGGAG	2 cut(s)	766, 945
Bpu10I	CCTNAGC	1 cut(s)	909
BsaI	GGTCTC	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	1 cut(s)	1022
Bse1I	ACTGG	2 cut(s)	132, 749
Bse21I	CCTNAGG	1 cut(s)	87
Bse3DI	GCAATG	4 cut(s)	31, 199, 279, 347
BseBI	CCWGG	2 cut(s)	485, 536
BseGI	GGATG	4 cut(s)	493, 691, 898, 924
BseLI	CCNNNNNNNGG	1 cut(s)	1022
BseMI	GCAATG	4 cut(s)	31, 199, 279, 347
BseMII	CTCAG	3 cut(s)	78, 230, 900
BseNI	ACTGG	2 cut(s)	132, 749
BseRI	GAGGAG	2 cut(s)	138, 926
BseXI	GCAGC	1 cut(s)	33
BsgI	GTGCAG	2 cut(s)	51, 336
BshFI	GGCC	1 cut(s)	826
BshNI	GGYRCC	2 cut(s)	81, 91
BsiHKCI	CYCGRG	1 cut(s)	354
BslI	CCNNNNNNNGG	1 cut(s)	1022
BsmAI	GTCTC	3 cut(s)	67, 183, 513
BsmI	GAATGC	1 cut(s)	910
BsnI	GGCC	1 cut(s)	826
Bso31I	GGTCTC	1 cut(s)	67
BsoBI	CYCGRG	1 cut(s)	354
Bsp143I	GATC	5 cut(s)	113, 158, 367, 502, 640
BspACI	CCGC	1 cut(s)	421
BspANI	GGCC	1 cut(s)	826
BspCNI	CTCAG	3 cut(s)	79, 229, 901
BspLI	GGNNCC	6 cut(s)	83, 93, 130, 160, 540, 846
BspPI	GGATC	5 cut(s)	121, 153, 166, 375, 635
BspT107I	GGYRCC	2 cut(s)	81, 91
BspTNI	GGTCTC	1 cut(s)	67
BsrDI	GCAATG	4 cut(s)	31, 199, 279, 347
BsrI	ACTGG	2 cut(s)	132, 749
BssMI	GATC	5 cut(s)	113, 158, 367, 502, 640
BssSI	CACGAG	1 cut(s)	819
Bst2BI	CACGAG	1 cut(s)	819
Bst2UI	CCWGG	2 cut(s)	485, 536
Bst4CI	ACNGT	2 cut(s)	436, 1009
Bst6I	CTCTTC	2 cut(s)	168, 708
BstC8I	GCNNGC	1 cut(s)	396
BstDEI	CTNAG	3 cut(s)	87, 216, 909
BstF5I	GGATG	4 cut(s)	493, 691, 898, 924
BstKTI	GATC	5 cut(s)	116, 161, 370, 505, 643
BstMAI	GTCTC	3 cut(s)	67, 183, 513
BstMBI	GATC	5 cut(s)	113, 158, 367, 502, 640
BstMWI	GCNNNNNNNGC	1 cut(s)	844
BstNI	CCWGG	2 cut(s)	485, 536
BstNSI	RCATGY	2 cut(s)	212, 398
BstSCI	CCNGG	2 cut(s)	483, 534
BstV1I	GCAGC	1 cut(s)	33
BstV2I	GAAGAC	1 cut(s)	504
BstX2I	RGATCY	2 cut(s)	158, 640
BstYI	RGATCY	2 cut(s)	158, 640
Bsu36I	CCTNAGG	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	826
BtsCI	GGATG	4 cut(s)	493, 691, 898, 924
BtsI	GCAGTG	1 cut(s)	983
BtsIMutI	CAGTG	2 cut(s)	139, 983
Cac8I	GCNNGC	1 cut(s)	396
Cfr13I	GGNCC	1 cut(s)	824
Csp6I	GTAC	2 cut(s)	82, 250
CviAII	CATG	5 cut(s)	209, 268, 308, 395, 889
CviQI	GTAC	2 cut(s)	82, 250
DdeI	CTNAG	3 cut(s)	87, 216, 909
DpnI	GATC	5 cut(s)	115, 160, 369, 504, 642
DpnII	GATC	5 cut(s)	113, 158, 367, 502, 640
Eam1104I	CTCTTC	2 cut(s)	168, 708
EarI	CTCTTC	2 cut(s)	168, 708
EciI	GGCGGA	1 cut(s)	410
Eco31I	GGTCTC	1 cut(s)	67
Eco57I	CTGAAG	3 cut(s)	192, 595, 776
Eco81I	CCTNAGG	1 cut(s)	87
Eco88I	CYCGRG	1 cut(s)	354
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	2 cut(s)	483, 534
FaeI	CATG	5 cut(s)	212, 271, 311, 398, 892
FatI	CATG	5 cut(s)	208, 267, 307, 394, 888
Fnu4HI	GCNGC	1 cut(s)	22
FokI	GGATG	4 cut(s)	500, 698, 905, 931
Fsp4HI	GCNGC	1 cut(s)	22
GluI	GCNGC	1 cut(s)	22
GsuI	CTGGAG	2 cut(s)	766, 945
HaeIII	GGCC	1 cut(s)	826
Hin1II	CATG	5 cut(s)	212, 271, 311, 398, 892
HinfI	GANTC	7 cut(s)	35, 147, 176, 491, 617, 766, 1026
Hpy188I	TCNGA	9 cut(s)	10, 40, 187, 496, 532, 614, 667, 756, 969
Hpy188III	TCNNGA	3 cut(s)	144, 371, 476
HpyAV	CCTTC	3 cut(s)	104, 560, 688
HpyCH4III	ACNGT	2 cut(s)	436, 1009
HpyCH4V	TGCA	5 cut(s)	32, 137, 317, 398, 932
HpyF10VI	GCNNNNNNNGC	1 cut(s)	844
HpyF3I	CTNAG	3 cut(s)	87, 216, 909
Hsp92II	CATG	5 cut(s)	212, 271, 311, 398, 892
KpnI	GGTACC	1 cut(s)	85
Kzo9I	GATC	5 cut(s)	113, 158, 367, 502, 640
LmnI	GCTCC	2 cut(s)	76, 844
Lsp1109I	GCAGC	1 cut(s)	33
LweI	GCATC	2 cut(s)	889, 909
MaeIII	GTNAC	2 cut(s)	202, 211
MalI	GATC	5 cut(s)	115, 160, 369, 504, 642
MboI	GATC	5 cut(s)	113, 158, 367, 502, 640
MboII	GAAGA	7 cut(s)	185, 464, 509, 650, 725, 769, 913
MfeI	CAATTG	1 cut(s)	456
MflI	RGATCY	2 cut(s)	158, 640
MluCI	AATT	5 cut(s)	4, 333, 456, 525, 953
MlyI	GAGTC	2 cut(s)	185, 626
MmeI	TCCRAC	2 cut(s)	201, 837
MroXI	GAANNNNTTC	1 cut(s)	468
MseI	TTAA	4 cut(s)	524, 774, 870, 956
MslI	CAYNNNNRTG	1 cut(s)	312
MspR9I	CCNGG	2 cut(s)	485, 536
MunI	CAATTG	1 cut(s)	456
Mva1269I	GAATGC	1 cut(s)	910
MvaI	CCWGG	2 cut(s)	485, 536
MwoI	GCNNNNNNNGC	1 cut(s)	844
NdeII	GATC	5 cut(s)	113, 158, 367, 502, 640
NlaIII	CATG	5 cut(s)	212, 271, 311, 398, 892
NlaIV	GGNNCC	6 cut(s)	83, 93, 130, 160, 540, 846
NmuCI	GTSAC	1 cut(s)	211
NspI	RCATGY	2 cut(s)	212, 398
PaeI	GCATGC	1 cut(s)	398
PaeR7I	CTCGAG	1 cut(s)	354
PctI	GAATGC	1 cut(s)	910
PdmI	GAANNNNTTC	1 cut(s)	468
PfeI	GAWTC	5 cut(s)	35, 147, 491, 766, 1026
PflMI	CCANNNNNTGG	1 cut(s)	1022
PkrI	GCNGC	1 cut(s)	23
PleI	GAGTC	2 cut(s)	184, 625
PpsI	GAGTC	2 cut(s)	184, 625
Psp6I	CCWGG	2 cut(s)	483, 534
PspGI	CCWGG	2 cut(s)	483, 534
PspN4I	GGNNCC	6 cut(s)	83, 93, 130, 160, 540, 846
PspPI	GGNCC	1 cut(s)	824
PspXI	VCTCGAGB	1 cut(s)	354
PsuI	RGATCY	2 cut(s)	158, 640
RsaI	GTAC	2 cut(s)	83, 251
RsaNI	GTAC	2 cut(s)	82, 250
RseI	CAYNNNNRTG	1 cut(s)	312
SaqAI	TTAA	4 cut(s)	524, 774, 870, 956
SatI	GCNGC	1 cut(s)	22
Sau3AI	GATC	5 cut(s)	113, 158, 367, 502, 640
Sau96I	GGNCC	1 cut(s)	824
SchI	GAGTC	2 cut(s)	185, 626
ScrFI	CCNGG	2 cut(s)	485, 536
SfaNI	GCATC	2 cut(s)	889, 909
Sfr274I	CTCGAG	1 cut(s)	354
SlaI	CTCGAG	1 cut(s)	354
SmiMI	CAYNNNNRTG	1 cut(s)	312
SmlI	CTYRAG	1 cut(s)	354
SmoI	CTYRAG	1 cut(s)	354
SphI	GCATGC	1 cut(s)	398
Sse9I	AATT	5 cut(s)	4, 333, 456, 525, 953
SsiI	CCGC	1 cut(s)	421
SspI	AATATT	1 cut(s)	654
StyD4I	CCNGG	2 cut(s)	483, 534
TaaI	ACNGT	2 cut(s)	436, 1009
TaqI	TCGA	2 cut(s)	355, 370
TasI	AATT	5 cut(s)	4, 333, 456, 525, 953
TfiI	GAWTC	5 cut(s)	35, 147, 491, 766, 1026
Tru1I	TTAA	4 cut(s)	524, 774, 870, 956
Tru9I	TTAA	4 cut(s)	524, 774, 870, 956
TscAI	CASTG	2 cut(s)	139, 990
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	1 cut(s)	21
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	5 cut(s)	17, 315, 429, 477, 504
TspRI	CASTG	2 cut(s)	139, 990
Van91I	CCANNNNNTGG	1 cut(s)	1022
XapI	RAATTY	1 cut(s)	4
XceI	RCATGY	2 cut(s)	212, 398
XhoI	CTCGAG	1 cut(s)	354
XmnI	GAANNNNTTC	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.