Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8448307.1

Orthogroup ID

OG0006942

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1059

Gene Structure 1059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8448307.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

aattccgatgtggaaagcagcaatggtgcagaatcagatttgtgtgagaaaacgggggtctctttagctcccataaggtaccctgaggtgccaatggtagcaacagaaggatcaaatggaggaggaaccagtgcaaaatctggattctttcaaggatcctctccacctgaagagtctcattcggagagcaatgctgatgtaacgcatgtcactcagttggaaaaacagaactacacaaggctatggtactttgtatataagcacatggtatcaagcattgctgaaaaagatggagatgaagcacatgatggtgcagatgaggaacaaggaattgacaccaacacattgcctcgagcagaggtggatcgagagctgagcttgacaaatcagcatgcagacaacaaaaagaatgaactccgccgtattgaaactgtcaaaatggtggagaaagcaattgatgaaatacttcttccagaaaaccaggatgaatcagaagacgatcaatcaaacaacagagacttaatttcagaccaggaaccaccagaaaataaagttggcatagaaggaaaatctttcgcaactttttcctactttgccaaagatagcttcagagagtccaaaaagaaagcaggggaagatccaaaacaaatattgctcaaatctgataatgctgtcattgaggatgtagagaaggaagtgctgatggtagaagagaaacctaaacagaaaatgtcaaagaactggagaaatctgaagaaaatgattctgcttaataggtttatcaaggcattagagaaaggaaagaagtccaacccacgagggccaaaatatctgctcttggagcctgaccccgaaacagaaaaagttaatctaaagcatcaaaacatggatgagaggaagaatgctgaggagtggatgcttgattatgcacttcaaaaggctgttgctaaattaactccagctcggaatagaaaagtagcactgcttgttgaggcttttgaaacagttattccaaataatggaatcccaaacccgttcaagccagaagtcatttgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaM_binding

Protein Analysis

352

Amino Acids

39.69

Weight (kDa)

5.09

Isoelectric Point (pI)

42.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006942)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g24980 FvH4_6g24980 FvH4_6g24980 FvH4_6g24980 FvH4_6g24980
malus_domestica	MD12G1087500.v1.1 MD14G1082900.v1.1
prunus_persica	Prupe.7G047600_v2.0.a1 Prupe.7G047600_v2.0.a1
pyrus_communis	pycom12g07530
rosa_chinensis	RchiOBHm_Chr2g0124711
rosa_laevigata	RLG00000018816
rosa_multiflora	Rmu_co8137268.1_g000001 Rmu_co8184604.1_g000001 Rmu_co8188110.1_g000001 Rmu_co8448307.1_g000001 Rmu_sc0007057.1_g000004 Rmu_sc0042199.1_g000001 Rmu_sc0042237.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119720
rosa_rugosa	Rorug02G0252000
rosa_samantha	Rh2AG311000 Rh2BG319500 Rh2CG298400 Rh2DG335100
rosa_wichuraiana	Rw2G025160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	78
AccB1I	GGYRCC	2 cut(s)	78, 88
AccB7I	CCANNNNNTGG	1 cut(s)	1019
AciI	CCGC	1 cut(s)	418
AclWI	GGATC	5 cut(s)	118, 150, 163, 372, 632
AcuI	CTGAAG	3 cut(s)	189, 592, 773
AfaI	GTAC	2 cut(s)	80, 248
AfiI	CCNNNNNNNGG	1 cut(s)	1019
AgsI	TTSAA	5 cut(s)	152, 428, 935, 1001, 1039
AjnI	CCWGG	2 cut(s)	480, 531
AjuI	GAANNNNNNNTTGG	4 cut(s)	537, 569, 590, 622
AluBI	AGCT	5 cut(s)	68, 373, 378, 606, 962
AluI	AGCT	5 cut(s)	68, 373, 378, 606, 962
Alw26I	GTCTC	3 cut(s)	64, 180, 510
AlwI	GGATC	5 cut(s)	118, 150, 163, 372, 632
Ama87I	CYCGRG	1 cut(s)	351
AoxI	GGCC	1 cut(s)	821
ApeKI	GCWGC	1 cut(s)	18
Asp700I	GAANNNNTTC	1 cut(s)	465
Asp718I	GGTACC	1 cut(s)	78
AspS9I	GGNCC	1 cut(s)	821
AvaI	CYCGRG	1 cut(s)	351
AxyI	CCTNAGG	1 cut(s)	84
BamHI	GGATCC	1 cut(s)	155
BanI	GGYRCC	2 cut(s)	78, 88
BauI	CACGAG	1 cut(s)	816
BbsI	GAAGAC	1 cut(s)	501
BbvCI	CCTCAGC	1 cut(s)	906
BbvI	GCAGC	1 cut(s)	30
BccI	CCATC	3 cut(s)	284, 302, 697
BceAI	ACGGC	1 cut(s)	405
BciT130I	CCWGG	2 cut(s)	482, 533
BcoDI	GTCTC	3 cut(s)	64, 180, 510
BisI	GCNGC	1 cut(s)	19
BlpI	GCTNAGC	1 cut(s)	374
BlsI	GCNGC	1 cut(s)	20
Bme1390I	CCNGG	2 cut(s)	482, 533
BmeT110I	CYCGRG	1 cut(s)	351
BmgT120I	GGNCC	1 cut(s)	821
BmiI	GGNNCC	6 cut(s)	80, 90, 127, 157, 537, 843
BmrFI	CCNGG	2 cut(s)	482, 533
BmsI	GCATC	2 cut(s)	886, 906
BpiI	GAAGAC	1 cut(s)	501
BpmI	CTGGAG	2 cut(s)	763, 942
Bpu10I	CCTNAGC	1 cut(s)	906
Bpu1102I	GCTNAGC	1 cut(s)	374
BsaI	GGTCTC	1 cut(s)	64
Bsc4I	CCNNNNNNNGG	1 cut(s)	1019
Bse1I	ACTGG	2 cut(s)	129, 746
Bse21I	CCTNAGG	1 cut(s)	84
Bse3DI	GCAATG	4 cut(s)	28, 196, 276, 344
BseBI	CCWGG	2 cut(s)	482, 533
BseGI	GGATG	4 cut(s)	490, 688, 895, 921
BseLI	CCNNNNNNNGG	1 cut(s)	1019
BseMI	GCAATG	4 cut(s)	28, 196, 276, 344
BseMII	CTCAG	4 cut(s)	75, 227, 365, 897
BseNI	ACTGG	2 cut(s)	129, 746
BseRI	GAGGAG	2 cut(s)	135, 923
BseXI	GCAGC	1 cut(s)	30
BsgI	GTGCAG	2 cut(s)	48, 333
BshFI	GGCC	1 cut(s)	823
BshNI	GGYRCC	2 cut(s)	78, 88
BsiHKCI	CYCGRG	1 cut(s)	351
BslI	CCNNNNNNNGG	1 cut(s)	1019
BsmAI	GTCTC	3 cut(s)	64, 180, 510
BsmI	GAATGC	1 cut(s)	907
BsnI	GGCC	1 cut(s)	823
Bso31I	GGTCTC	1 cut(s)	64
BsoBI	CYCGRG	1 cut(s)	351
Bsp143I	GATC	5 cut(s)	110, 155, 364, 499, 637
Bsp1720I	GCTNAGC	1 cut(s)	374
BspACI	CCGC	1 cut(s)	418
BspANI	GGCC	1 cut(s)	823
BspCNI	CTCAG	4 cut(s)	76, 226, 366, 898
BspLI	GGNNCC	6 cut(s)	80, 90, 127, 157, 537, 843
BspPI	GGATC	5 cut(s)	118, 150, 163, 372, 632
BspT107I	GGYRCC	2 cut(s)	78, 88
BspTNI	GGTCTC	1 cut(s)	64
BsrDI	GCAATG	4 cut(s)	28, 196, 276, 344
BsrI	ACTGG	2 cut(s)	129, 746
BssMI	GATC	5 cut(s)	110, 155, 364, 499, 637
BssSI	CACGAG	1 cut(s)	816
Bst2BI	CACGAG	1 cut(s)	816
Bst2UI	CCWGG	2 cut(s)	482, 533
Bst4CI	ACNGT	2 cut(s)	433, 1006
Bst6I	CTCTTC	2 cut(s)	165, 705
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	4 cut(s)	84, 213, 374, 906
BstF5I	GGATG	4 cut(s)	490, 688, 895, 921
BstKTI	GATC	5 cut(s)	113, 158, 367, 502, 640
BstMAI	GTCTC	3 cut(s)	64, 180, 510
BstMBI	GATC	5 cut(s)	110, 155, 364, 499, 637
BstMWI	GCNNNNNNNGC	1 cut(s)	841
BstNI	CCWGG	2 cut(s)	482, 533
BstNSI	RCATGY	2 cut(s)	209, 395
BstSCI	CCNGG	2 cut(s)	480, 531
BstV1I	GCAGC	1 cut(s)	30
BstV2I	GAAGAC	1 cut(s)	501
BstX2I	RGATCY	2 cut(s)	155, 637
BstYI	RGATCY	2 cut(s)	155, 637
Bsu36I	CCTNAGG	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	823
BtsCI	GGATG	4 cut(s)	490, 688, 895, 921
BtsI	GCAGTG	1 cut(s)	980
BtsIMutI	CAGTG	2 cut(s)	136, 980
Cac8I	GCNNGC	1 cut(s)	393
Cfr13I	GGNCC	1 cut(s)	821
Csp6I	GTAC	2 cut(s)	79, 247
CviAII	CATG	5 cut(s)	206, 265, 305, 392, 886
CviQI	GTAC	2 cut(s)	79, 247
DdeI	CTNAG	4 cut(s)	84, 213, 374, 906
DpnI	GATC	5 cut(s)	112, 157, 366, 501, 639
DpnII	GATC	5 cut(s)	110, 155, 364, 499, 637
Eam1104I	CTCTTC	2 cut(s)	165, 705
EarI	CTCTTC	2 cut(s)	165, 705
EciI	GGCGGA	1 cut(s)	407
Eco31I	GGTCTC	1 cut(s)	64
Eco57I	CTGAAG	3 cut(s)	189, 592, 773
Eco81I	CCTNAGG	1 cut(s)	84
Eco88I	CYCGRG	1 cut(s)	351
EcoRII	CCWGG	2 cut(s)	480, 531
FaeI	CATG	5 cut(s)	209, 268, 308, 395, 889
FatI	CATG	5 cut(s)	205, 264, 304, 391, 885
Fnu4HI	GCNGC	1 cut(s)	19
FokI	GGATG	4 cut(s)	497, 695, 902, 928
Fsp4HI	GCNGC	1 cut(s)	19
GluI	GCNGC	1 cut(s)	19
GsuI	CTGGAG	2 cut(s)	763, 942
HaeIII	GGCC	1 cut(s)	823
Hin1II	CATG	5 cut(s)	209, 268, 308, 395, 889
HinfI	GANTC	7 cut(s)	32, 144, 173, 488, 614, 763, 1023
Hpy188I	TCNGA	9 cut(s)	7, 37, 184, 493, 529, 611, 664, 753, 966
Hpy188III	TCNNGA	3 cut(s)	141, 368, 473
HpyAV	CCTTC	3 cut(s)	101, 557, 685
HpyCH4III	ACNGT	2 cut(s)	433, 1006
HpyCH4V	TGCA	5 cut(s)	29, 134, 314, 395, 929
HpyF10VI	GCNNNNNNNGC	1 cut(s)	841
HpyF3I	CTNAG	4 cut(s)	84, 213, 374, 906
Hsp92II	CATG	5 cut(s)	209, 268, 308, 395, 889
KpnI	GGTACC	1 cut(s)	82
Kzo9I	GATC	5 cut(s)	110, 155, 364, 499, 637
LmnI	GCTCC	2 cut(s)	73, 841
Lsp1109I	GCAGC	1 cut(s)	30
LweI	GCATC	2 cut(s)	886, 906
MaeIII	GTNAC	2 cut(s)	199, 208
MalI	GATC	5 cut(s)	112, 157, 366, 501, 639
MboI	GATC	5 cut(s)	110, 155, 364, 499, 637
MboII	GAAGA	7 cut(s)	182, 461, 506, 647, 722, 766, 910
MfeI	CAATTG	1 cut(s)	453
MflI	RGATCY	2 cut(s)	155, 637
MluCI	AATT	4 cut(s)	330, 453, 522, 950
MlyI	GAGTC	2 cut(s)	182, 623
MmeI	TCCRAC	2 cut(s)	198, 834
MroXI	GAANNNNTTC	1 cut(s)	465
MseI	TTAA	4 cut(s)	521, 771, 867, 953
MslI	CAYNNNNRTG	1 cut(s)	309
MspR9I	CCNGG	2 cut(s)	482, 533
MunI	CAATTG	1 cut(s)	453
Mva1269I	GAATGC	1 cut(s)	907
MvaI	CCWGG	2 cut(s)	482, 533
MwoI	GCNNNNNNNGC	1 cut(s)	841
NdeII	GATC	5 cut(s)	110, 155, 364, 499, 637
NlaIII	CATG	5 cut(s)	209, 268, 308, 395, 889
NlaIV	GGNNCC	6 cut(s)	80, 90, 127, 157, 537, 843
NmuCI	GTSAC	1 cut(s)	208
NspI	RCATGY	2 cut(s)	209, 395
PaeI	GCATGC	1 cut(s)	395
PaeR7I	CTCGAG	1 cut(s)	351
PctI	GAATGC	1 cut(s)	907
PdmI	GAANNNNTTC	1 cut(s)	465
PfeI	GAWTC	5 cut(s)	32, 144, 488, 763, 1023
PflMI	CCANNNNNTGG	1 cut(s)	1019
PkrI	GCNGC	1 cut(s)	20
PleI	GAGTC	2 cut(s)	181, 622
PpsI	GAGTC	2 cut(s)	181, 622
Psp6I	CCWGG	2 cut(s)	480, 531
PspGI	CCWGG	2 cut(s)	480, 531
PspN4I	GGNNCC	6 cut(s)	80, 90, 127, 157, 537, 843
PspPI	GGNCC	1 cut(s)	821
PspXI	VCTCGAGB	1 cut(s)	351
PsuI	RGATCY	2 cut(s)	155, 637
RsaI	GTAC	2 cut(s)	80, 248
RsaNI	GTAC	2 cut(s)	79, 247
RseI	CAYNNNNRTG	1 cut(s)	309
SaqAI	TTAA	4 cut(s)	521, 771, 867, 953
SatI	GCNGC	1 cut(s)	19
Sau3AI	GATC	5 cut(s)	110, 155, 364, 499, 637
Sau96I	GGNCC	1 cut(s)	821
SchI	GAGTC	2 cut(s)	182, 623
ScrFI	CCNGG	2 cut(s)	482, 533
SfaNI	GCATC	2 cut(s)	886, 906
Sfr274I	CTCGAG	1 cut(s)	351
SlaI	CTCGAG	1 cut(s)	351
SmiMI	CAYNNNNRTG	1 cut(s)	309
SmlI	CTYRAG	1 cut(s)	351
SmoI	CTYRAG	1 cut(s)	351
SphI	GCATGC	1 cut(s)	395
Sse9I	AATT	4 cut(s)	330, 453, 522, 950
SsiI	CCGC	1 cut(s)	418
SspI	AATATT	1 cut(s)	651
StyD4I	CCNGG	2 cut(s)	480, 531
TaaI	ACNGT	2 cut(s)	433, 1006
TaqI	TCGA	2 cut(s)	352, 367
TasI	AATT	4 cut(s)	330, 453, 522, 950
TfiI	GAWTC	5 cut(s)	32, 144, 488, 763, 1023
Tru1I	TTAA	4 cut(s)	521, 771, 867, 953
Tru9I	TTAA	4 cut(s)	521, 771, 867, 953
TscAI	CASTG	2 cut(s)	136, 987
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	1 cut(s)	18
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	4 cut(s)	312, 426, 474, 501
TspRI	CASTG	2 cut(s)	136, 987
Van91I	CCANNNNNTGG	1 cut(s)	1019
XceI	RCATGY	2 cut(s)	209, 395
XhoI	CTCGAG	1 cut(s)	351
XmnI	GAANNNNTTC	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.