Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8188110.1

Orthogroup ID

OG0006942

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 695

Gene Structure 695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8188110.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 695 bp

atcggaacagcttccgaagtcaccaatacagacataaaagaagagaaatgtctagcatcttgtcacaatgaaggtgttgatatcacttgcactgataaattgaacagcagcagtcctagatcaattccagaagatgtggaatctgttgtttgcactactgtcaaactccctgatgaagttgtggaatcaacaagtgacaatgaaagccatgaaaacaattgtgcttctggttgtgagccaccagaggaacaaacagccattgagcaaaaatatggaagtttggtgacagacaaaagtggtagtgtggagttggacaaaaatgaaggtgcggagtgtggtatgcaggcgaaaaatcacaagtatatcactatgtggaagttgatgtacaaacatgcagtgaagggtaacacagcagatgttggaaaccctctccctcttcatggagatccagtagaaggtaccactggcgtgcttgaaactgacaattcatcatttcctgaaacagatgagcatacagcttcgacaaatcacagtgcaggagaccaagaacttgagctctgtcagcaaaatgccattgacctagtccaggatgcatttgataaaattcttctcccagaagttcaggacagctcatatgatgatcaatcagttactagtgacataaactcagaccaggaaggattgcagctgaggaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaM_binding

Protein Analysis

231

Amino Acids

25.02

Weight (kDa)

4.23

Isoelectric Point (pI)

45.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006942)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g24980 FvH4_6g24980 FvH4_6g24980 FvH4_6g24980 FvH4_6g24980
malus_domestica	MD12G1087500.v1.1 MD14G1082900.v1.1
prunus_persica	Prupe.7G047600_v2.0.a1 Prupe.7G047600_v2.0.a1
pyrus_communis	pycom12g07530
rosa_chinensis	RchiOBHm_Chr2g0124711
rosa_laevigata	RLG00000018816
rosa_multiflora	Rmu_co8137268.1_g000001 Rmu_co8184604.1_g000001 Rmu_co8188110.1_g000001 Rmu_co8448307.1_g000001 Rmu_sc0007057.1_g000004 Rmu_sc0042199.1_g000001 Rmu_sc0042237.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119720
rosa_rugosa	Rorug02G0252000
rosa_samantha	Rh2AG311000 Rh2BG319500 Rh2CG298400 Rh2DG335100
rosa_wichuraiana	Rw2G025160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	458
AccB1I	GGYRCC	1 cut(s)	458
AciI	CCGC	1 cut(s)	329
AclWI	GGATC	1 cut(s)	440
AcsI	RAATTY	1 cut(s)	603
AdeI	CACNNNGTG	1 cut(s)	372
AfaI	GTAC	2 cut(s)	386, 460
AfiI	CCNNNNNNNGG	3 cut(s)	440, 455, 586
AgsI	TTSAA	2 cut(s)	103, 476
AhlI	ACTAGT	1 cut(s)	653
AjnI	CCWGG	2 cut(s)	585, 672
AleI	CACNNNNGTG	1 cut(s)	467
AluBI	AGCT	5 cut(s)	11, 518, 556, 630, 688
AluI	AGCT	5 cut(s)	11, 518, 556, 630, 688
Alw21I	GWGCWC	1 cut(s)	558
Alw26I	GTCTC	1 cut(s)	534
AlwI	GGATC	1 cut(s)	440
ApeKI	GCWGC	2 cut(s)	108, 685
ApoI	RAATTY	1 cut(s)	603
Asp700I	GAANNNNTTC	1 cut(s)	10
Asp718I	GGTACC	1 cut(s)	458
AsuHPI	GGTGA	2 cut(s)	13, 295
BanI	GGYRCC	1 cut(s)	458
BanII	GRGCYC	1 cut(s)	558
BarI	GAAGNNNNNNTAC	2 cut(s)	368, 400
Bbv12I	GWGCWC	1 cut(s)	558
BbvCI	CCTCAGC	1 cut(s)	689
BbvI	GCAGC	1 cut(s)	120
BciT130I	CCWGG	2 cut(s)	587, 674
BclI	TGATCA	1 cut(s)	640
BcoDI	GTCTC	1 cut(s)	534
BcuI	ACTAGT	1 cut(s)	653
BfaI	CTAG	4 cut(s)	53, 117, 581, 654
BisI	GCNGC	2 cut(s)	109, 686
BlsI	GCNGC	2 cut(s)	110, 687
Bme1390I	CCNGG	2 cut(s)	587, 674
BmiI	GGNNCC	1 cut(s)	460
BmrFI	CCNGG	2 cut(s)	587, 674
BmsI	GCATC	2 cut(s)	65, 580
Bpu10I	CCTNAGC	1 cut(s)	689
BpuEI	CTTGAG	1 cut(s)	572
BsaI	GGTCTC	1 cut(s)	534
BsaXI	ACNNNNNCTCC	2 cut(s)	435, 465
Bsc4I	CCNNNNNNNGG	3 cut(s)	440, 455, 586
Bse1I	ACTGG	2 cut(s)	449, 469
BseBI	CCWGG	2 cut(s)	587, 674
BseGI	GGATG	1 cut(s)	595
BseLI	CCNNNNNNNGG	3 cut(s)	440, 455, 586
BseMII	CTCAG	2 cut(s)	680, 681
BseNI	ACTGG	2 cut(s)	449, 469
BseXI	GCAGC	1 cut(s)	120
BsgI	GTGCAG	1 cut(s)	555
BshNI	GGYRCC	1 cut(s)	458
BsiHKAI	GWGCWC	1 cut(s)	558
BslI	CCNNNNNNNGG	3 cut(s)	440, 455, 586
BsmAI	GTCTC	1 cut(s)	534
Bso31I	GGTCTC	1 cut(s)	534
Bsp1286I	GDGCHC	1 cut(s)	558
Bsp1407I	TGTACA	1 cut(s)	384
Bsp143I	GATC	3 cut(s)	119, 445, 640
BspACI	CCGC	1 cut(s)	329
BspCNI	CTCAG	2 cut(s)	680, 681
BspLI	GGNNCC	1 cut(s)	460
BspPI	GGATC	1 cut(s)	440
BspT107I	GGYRCC	1 cut(s)	458
BspTNI	GGTCTC	1 cut(s)	534
BsrGI	TGTACA	1 cut(s)	384
BsrI	ACTGG	2 cut(s)	449, 469
BssMI	GATC	3 cut(s)	119, 445, 640
Bst2UI	CCWGG	2 cut(s)	587, 674
Bst4CI	ACNGT	2 cut(s)	160, 533
Bst6I	CTCTTC	2 cut(s)	36, 441
BstAUI	TGTACA	1 cut(s)	384
BstC8I	GCNNGC	2 cut(s)	345, 470
BstDEI	CTNAG	2 cut(s)	667, 689
BstENI	CCTNNNNNAGG	1 cut(s)	584
BstF5I	GGATG	1 cut(s)	595
BstKTI	GATC	3 cut(s)	122, 448, 643
BstMAI	GTCTC	1 cut(s)	534
BstMBI	GATC	3 cut(s)	119, 445, 640
BstMWI	GCNNNNNNNGC	1 cut(s)	562
BstNI	CCWGG	2 cut(s)	587, 674
BstNSI	RCATGY	1 cut(s)	395
BstSCI	CCNGG	2 cut(s)	585, 672
BstV1I	GCAGC	1 cut(s)	120
BstX2I	RGATCY	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	445
BtsCI	GGATG	1 cut(s)	595
BtsI	GCAGTG	1 cut(s)	402
BtsIMutI	CAGTG	4 cut(s)	90, 402, 462, 538
Cac8I	GCNNGC	2 cut(s)	345, 470
Csp6I	GTAC	2 cut(s)	385, 459
CviAII	CATG	3 cut(s)	209, 392, 440
CviJI	RGCY	8 cut(s)	11, 207, 238, 257, 518, 556, 630, 688
CviKI_1	RGCY	8 cut(s)	11, 207, 238, 257, 518, 556, 630, 688
CviQI	GTAC	2 cut(s)	385, 459
DdeI	CTNAG	2 cut(s)	667, 689
DpnI	GATC	3 cut(s)	121, 447, 642
DpnII	GATC	3 cut(s)	119, 445, 640
DraIII	CACNNNGTG	1 cut(s)	372
Eam1104I	CTCTTC	2 cut(s)	36, 441
EarI	CTCTTC	2 cut(s)	36, 441
Ecl136II	GAGCTC	1 cut(s)	556
Eco24I	GRGCYC	1 cut(s)	558
Eco31I	GGTCTC	1 cut(s)	534
Eco32I	GATATC	1 cut(s)	82
Eco53kI	GAGCTC	1 cut(s)	556
EcoICRI	GAGCTC	1 cut(s)	556
EcoNI	CCTNNNNNAGG	1 cut(s)	584
EcoRII	CCWGG	2 cut(s)	585, 672
EcoRV	GATATC	1 cut(s)	82
EcoT22I	ATGCAT	1 cut(s)	595
EcoT38I	GRGCYC	1 cut(s)	558
FaeI	CATG	3 cut(s)	212, 395, 443
FatI	CATG	3 cut(s)	208, 391, 439
FauNDI	CATATG	1 cut(s)	634
FbaI	TGATCA	1 cut(s)	640
Fnu4HI	GCNGC	2 cut(s)	109, 686
FokI	GGATG	1 cut(s)	602
FriOI	GRGCYC	1 cut(s)	558
Fsp4HI	GCNGC	2 cut(s)	109, 686
FspBI	CTAG	4 cut(s)	53, 117, 581, 654
GluI	GCNGC	2 cut(s)	109, 686
Hin1II	CATG	3 cut(s)	212, 395, 443
HinfI	GANTC	2 cut(s)	140, 185
HphI	GGTGA	2 cut(s)	13, 295
Hpy188I	TCNGA	3 cut(s)	5, 16, 670
Hpy188III	TCNNGA	3 cut(s)	128, 497, 623
HpyAV	CCTTC	5 cut(s)	65, 317, 394, 449, 671
HpyCH4III	ACNGT	2 cut(s)	160, 533
HpyCH4V	TGCA	7 cut(s)	90, 153, 343, 395, 536, 593, 685
HpyF10VI	GCNNNNNNNGC	1 cut(s)	562
HpyF3I	CTNAG	2 cut(s)	667, 689
Hsp92II	CATG	3 cut(s)	212, 395, 443
KpnI	GGTACC	1 cut(s)	462
Ksp22I	TGATCA	1 cut(s)	640
Kzo9I	GATC	3 cut(s)	119, 445, 640
Lsp1109I	GCAGC	1 cut(s)	120
LweI	GCATC	2 cut(s)	65, 580
MaeI	CTAG	4 cut(s)	53, 117, 581, 654
MaeIII	GTNAC	7 cut(s)	19, 62, 194, 283, 404, 649, 656
MalI	GATC	3 cut(s)	121, 447, 642
MboI	GATC	3 cut(s)	119, 445, 640
MboII	GAAGA	4 cut(s)	53, 143, 428, 599
MfeI	CAATTG	1 cut(s)	217
MflI	RGATCY	1 cut(s)	445
MhlI	GDGCHC	1 cut(s)	558
MluCI	AATT	5 cut(s)	98, 123, 217, 484, 603
MmeI	TCCRAC	2 cut(s)	291, 400
MnlI	CCTC	4 cut(s)	238, 438, 444, 684
Mph1103I	ATGCAT	1 cut(s)	595
MroXI	GAANNNNTTC	1 cut(s)	10
MslI	CAYNNNNRTG	1 cut(s)	467
MspA1I	CMGCKG	1 cut(s)	688
MspR9I	CCNGG	2 cut(s)	587, 674
MunI	CAATTG	1 cut(s)	217
MvaI	CCWGG	2 cut(s)	587, 674
MwoI	GCNNNNNNNGC	1 cut(s)	562
NdeI	CATATG	1 cut(s)	634
NdeII	GATC	3 cut(s)	119, 445, 640
NlaIII	CATG	3 cut(s)	212, 395, 443
NlaIV	GGNNCC	1 cut(s)	460
NmuCI	GTSAC	5 cut(s)	19, 62, 194, 283, 656
NsiI	ATGCAT	1 cut(s)	595
NspI	RCATGY	1 cut(s)	395
OliI	CACNNNNGTG	1 cut(s)	467
PdmI	GAANNNNTTC	1 cut(s)	10
PfeI	GAWTC	2 cut(s)	140, 185
PflFI	GACNNNGTC	1 cut(s)	581
PfoI	TCCNGGA	1 cut(s)	585
PkrI	GCNGC	2 cut(s)	110, 687
Psp124BI	GAGCTC	1 cut(s)	558
Psp6I	CCWGG	2 cut(s)	585, 672
PspGI	CCWGG	2 cut(s)	585, 672
PspN4I	GGNNCC	1 cut(s)	460
PsuI	RGATCY	1 cut(s)	445
PsyI	GACNNNGTC	1 cut(s)	581
PvuII	CAGCTG	1 cut(s)	688
RsaI	GTAC	2 cut(s)	386, 460
RsaNI	GTAC	2 cut(s)	385, 459
RseI	CAYNNNNRTG	1 cut(s)	467
SacI	GAGCTC	1 cut(s)	558
SatI	GCNGC	2 cut(s)	109, 686
Sau3AI	GATC	3 cut(s)	119, 445, 640
ScrFI	CCNGG	2 cut(s)	587, 674
SduI	GDGCHC	1 cut(s)	558
SetI	ASST	9 cut(s)	13, 76, 328, 460, 520, 558, 582, 632, 690
SfaNI	GCATC	2 cut(s)	65, 580
SmiMI	CAYNNNNRTG	1 cut(s)	467
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
SpeI	ACTAGT	1 cut(s)	653
Sse9I	AATT	5 cut(s)	98, 123, 217, 484, 603
SsiI	CCGC	1 cut(s)	329
SspMI	CTAG	4 cut(s)	53, 117, 581, 654
SstI	GAGCTC	1 cut(s)	558
StyD4I	CCNGG	2 cut(s)	585, 672
TaaI	ACNGT	2 cut(s)	160, 533
TaqI	TCGA	1 cut(s)	521
TasI	AATT	5 cut(s)	98, 123, 217, 484, 603
TatI	WGTACW	1 cut(s)	384
TfiI	GAWTC	2 cut(s)	140, 185
TscAI	CASTG	4 cut(s)	97, 402, 469, 538
TseFI	GTSAC	5 cut(s)	19, 62, 194, 283, 656
TseI	GCWGC	2 cut(s)	108, 685
Tsp45I	GTSAC	5 cut(s)	19, 62, 194, 283, 656
TspDTI	ATGAA	7 cut(s)	84, 189, 216, 225, 336, 428, 477
TspRI	CASTG	4 cut(s)	97, 402, 469, 538
Tth111I	GACNNNGTC	1 cut(s)	581
XagI	CCTNNNNNAGG	1 cut(s)	584
XapI	RAATTY	1 cut(s)	603
XceI	RCATGY	1 cut(s)	395
XmnI	GAANNNNTTC	1 cut(s)	10
XspI	CTAG	4 cut(s)	53, 117, 581, 654
Zsp2I	ATGCAT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.