Plant calmodulin-binding domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g24980 FvH4_6g24980 FvH4_6g24980 FvH4_6g24980 FvH4_6g24980 |
| malus_domestica | MD12G1087500.v1.1 MD14G1082900.v1.1 |
| prunus_persica | Prupe.7G047600_v2.0.a1 Prupe.7G047600_v2.0.a1 |
| pyrus_communis | pycom12g07530 |
| rosa_chinensis | RchiOBHm_Chr2g0124711 |
| rosa_laevigata | RLG00000018816 |
| rosa_multiflora | Rmu_co8137268.1_g000001 Rmu_co8184604.1_g000001 Rmu_co8188110.1_g000001 Rmu_co8448307.1_g000001 Rmu_sc0007057.1_g000004 Rmu_sc0042199.1_g000001 Rmu_sc0042237.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00119720 |
| rosa_rugosa | Rorug02G0252000 |
| rosa_samantha | Rh2AG311000 Rh2BG319500 Rh2CG298400 Rh2DG335100 |
| rosa_wichuraiana | Rw2G025160 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 428, 2587 |
| Acc65I | GGTACC | 1 cut(s) | 1616 |
| AccB1I | GGYRCC | 1 cut(s) | 1616 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 2010, 3691, 3824 |
| AccIII | TCCGGA | 1 cut(s) | 347 |
| AciI | CCGC | 5 cut(s) | 463, 1487, 1553, 2146, 3223 |
| AcsI | RAATTY | 4 cut(s) | 317, 1761, 2452, 2854 |
| AcuI | CTGAAG | 6 cut(s) | 687, 1881, 2466, 2994, 3397, 3578 |
| AdeI | CACNNNGTG | 2 cut(s) | 1130, 1530 |
| AfaI | GTAC | 6 cut(s) | 380, 765, 1544, 1618, 2467, 3053 |
| AfeI | AGCGCT | 1 cut(s) | 2009 |
| AflIII | ACRYGT | 1 cut(s) | 2617 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2308 |
| AhlI | ACTAGT | 2 cut(s) | 494, 1811 |
| AjnI | CCWGG | 4 cut(s) | 1743, 1830, 3285, 3336 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 3342, 3374, 3395, 3427 |
| AleI | CACNNNNGTG | 1 cut(s) | 1625 |
| Alw21I | GWGCWC | 2 cut(s) | 347, 1716 |
| Ama87I | CYCGRG | 1 cut(s) | 3156 |
| Aor13HI | TCCGGA | 1 cut(s) | 347 |
| Aor51HI | AGCGCT | 1 cut(s) | 2009 |
| AoxI | GGCC | 2 cut(s) | 955, 3626 |
| ApaI | GGGCCC | 1 cut(s) | 959 |
| ApeKI | GCWGC | 8 cut(s) | 139, 423, 489, 993, 1263, 1843, 2333, 2871 |
| ApoI | RAATTY | 4 cut(s) | 317, 1761, 2452, 2854 |
| AseI | ATTAAT | 1 cut(s) | 2136 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 931, 1165, 2274, 3270 |
| Asp718I | GGTACC | 1 cut(s) | 1616 |
| AspLEI | GCGC | 3 cut(s) | 210, 801, 2010 |
| AspS9I | GGNCC | 5 cut(s) | 955, 956, 2310, 2602, 3626 |
| AvaI | CYCGRG | 1 cut(s) | 3156 |
| AvaII | GGWCC | 2 cut(s) | 2310, 2602 |
| AxyI | CCTNAGG | 1 cut(s) | 657 |
| BaeGI | GKGCMC | 1 cut(s) | 959 |
| BamHI | GGATCC | 2 cut(s) | 2110, 2960 |
| BanI | GGYRCC | 1 cut(s) | 1616 |
| BanII | GRGCYC | 4 cut(s) | 347, 358, 959, 1716 |
| BarI | GAAGNNNNNNTAC | 8 cut(s) | 954, 986, 1526, 1558, 2081, 2113, 2559, 2591 |
| BauI | CACGAG | 2 cut(s) | 558, 3621 |
| BbsI | GAAGAC | 4 cut(s) | 815, 1986, 2553, 3306 |
| Bbv12I | GWGCWC | 2 cut(s) | 347, 1716 |
| BbvCI | CCTCAGC | 2 cut(s) | 1847, 3711 |
| BbvI | GCAGC | 8 cut(s) | 126, 410, 501, 1005, 1275, 1855, 2345, 2883 |
| BccI | CCATC | 7 cut(s) | 196, 2633, 2744, 2918, 3089, 3107, 3502 |
| BceAI | ACGGC | 3 cut(s) | 96, 2159, 3210 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2561, 2595 |
| BciT130I | CCWGG | 4 cut(s) | 1745, 1832, 3287, 3338 |
| BclI | TGATCA | 1 cut(s) | 1798 |
| BcuI | ACTAGT | 2 cut(s) | 494, 1811 |
| BfaI | CTAG | 6 cut(s) | 252, 273, 495, 1208, 1739, 1812 |
| BfmI | CTRYAG | 3 cut(s) | 140, 228, 2331 |
| BfoI | RGCGCY | 2 cut(s) | 802, 2011 |
| BfuAI | ACCTGC | 2 cut(s) | 428, 2587 |
| BglII | AGATCT | 2 cut(s) | 200, 2338 |
| BisI | GCNGC | 9 cut(s) | 140, 424, 490, 994, 1264, 1844, 2147, 2334, 2872 |
| BlpI | GCTNAGC | 1 cut(s) | 3179 |
| BlsI | GCNGC | 9 cut(s) | 141, 425, 491, 995, 1265, 1845, 2148, 2335, 2873 |
| Bme1390I | CCNGG | 4 cut(s) | 1745, 1832, 3287, 3338 |
| Bme18I | GGWCC | 2 cut(s) | 2310, 2602 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2308 |
| BmeT110I | CYCGRG | 1 cut(s) | 3156 |
| BmgT120I | GGNCC | 5 cut(s) | 955, 956, 2310, 2602, 3626 |
| BmrFI | CCNGG | 4 cut(s) | 1745, 1832, 3287, 3338 |
| BmrI | ACTGGG | 1 cut(s) | 2707 |
| BmsI | GCATC | 6 cut(s) | 211, 1164, 1220, 1738, 2175, 3711 |
| BmuI | ACTGGG | 1 cut(s) | 2707 |
| BpiI | GAAGAC | 4 cut(s) | 815, 1986, 2553, 3306 |
| BpmI | CTGGAG | 6 cut(s) | 86, 579, 2032, 2211, 3568, 3747 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1847, 3711 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3179 |
| BpuEI | CTTGAG | 4 cut(s) | 620, 758, 1730, 2024 |
| BsaAI | YACGTR | 1 cut(s) | 848 |
| BsaBI | GATNNNNATC | 1 cut(s) | 388 |
| BsaI | GGTCTC | 3 cut(s) | 410, 1692, 2789 |
| BsaJI | CCNNGG | 3 cut(s) | 124, 2106, 2592 |
| BsaWI | WCCGGW | 2 cut(s) | 347, 2085 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 259, 289, 751, 781, 1593, 1623 |
| Bse1I | ACTGG | 9 cut(s) | 1607, 1627, 2363, 2389, 2510, 2713, 2760, 2934, 3551 |
| Bse21I | CCTNAGG | 1 cut(s) | 657 |
| Bse3DI | GCAATG | 7 cut(s) | 1960, 2359, 2881, 2914, 3001, 3081, 3149 |
| Bse8I | GATNNNNATC | 1 cut(s) | 388 |
| BseAI | TCCGGA | 1 cut(s) | 347 |
| BseBI | CCWGG | 4 cut(s) | 1745, 1832, 3287, 3338 |
| BseDI | CCNNGG | 3 cut(s) | 124, 2106, 2592 |
| BseGI | GGATG | 8 cut(s) | 1753, 1861, 2190, 2602, 3295, 3493, 3700, 3726 |
| BseJI | GATNNNNATC | 1 cut(s) | 388 |
| BseMI | GCAATG | 7 cut(s) | 1960, 2359, 2881, 2914, 3001, 3081, 3149 |
| BseMII | CTCAG | 8 cut(s) | 648, 827, 1838, 1839, 2092, 3032, 3170, 3702 |
| BseNI | ACTGG | 9 cut(s) | 1607, 1627, 2363, 2389, 2510, 2713, 2760, 2934, 3551 |
| BseRI | GAGGAG | 7 cut(s) | 29, 141, 280, 366, 1073, 2660, 3728 |
| BseSI | GKGCMC | 1 cut(s) | 959 |
| BseXI | GCAGC | 8 cut(s) | 126, 410, 501, 1005, 1275, 1855, 2345, 2883 |
| BsgI | GTGCAG | 4 cut(s) | 1713, 2562, 2934, 3138 |
| BshFI | GGCC | 2 cut(s) | 957, 3628 |
| BshNI | GGYRCC | 1 cut(s) | 1616 |
| BsiHKAI | GWGCWC | 2 cut(s) | 347, 1716 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3156 |
| BsiSI | CCGG | 3 cut(s) | 62, 348, 2086 |
| BslFI | GGGAC | 3 cut(s) | 444, 634, 2626 |
| BsmBI | CGTCTC | 3 cut(s) | 903, 1033, 2876 |
| BsmFI | GGGAC | 3 cut(s) | 444, 634, 2626 |
| BsmI | GAATGC | 2 cut(s) | 640, 3712 |
| BsnI | GGCC | 2 cut(s) | 957, 3628 |
| Bso31I | GGTCTC | 3 cut(s) | 410, 1692, 2789 |
| BsoBI | CYCGRG | 1 cut(s) | 3156 |
| Bsp120I | GGGCCC | 1 cut(s) | 955 |
| Bsp1286I | GDGCHC | 4 cut(s) | 347, 358, 959, 1716 |
| Bsp13I | TCCGGA | 1 cut(s) | 347 |
| Bsp1407I | TGTACA | 2 cut(s) | 1542, 2465 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3179 |
| BspACI | CCGC | 5 cut(s) | 463, 1487, 1553, 2146, 3223 |
| BspANI | GGCC | 2 cut(s) | 957, 3628 |
| BspCNI | CTCAG | 8 cut(s) | 649, 826, 1838, 1839, 2091, 3031, 3171, 3703 |
| BspEI | TCCGGA | 1 cut(s) | 347 |
| BspMAI | CTGCAG | 3 cut(s) | 144, 232, 2335 |
| BspMI | ACCTGC | 2 cut(s) | 428, 2587 |
| BspQI | GCTCTTC | 3 cut(s) | 335, 631, 957 |
| BspT107I | GGYRCC | 1 cut(s) | 1616 |
| BspTNI | GGTCTC | 3 cut(s) | 410, 1692, 2789 |
| BsrDI | GCAATG | 7 cut(s) | 1960, 2359, 2881, 2914, 3001, 3081, 3149 |
| BsrGI | TGTACA | 2 cut(s) | 1542, 2465 |
| BsrI | ACTGG | 9 cut(s) | 1607, 1627, 2363, 2389, 2510, 2713, 2760, 2934, 3551 |
| BssECI | CCNNGG | 3 cut(s) | 124, 2106, 2592 |
| BssSI | CACGAG | 2 cut(s) | 558, 3621 |
| BssT1I | CCWWGG | 1 cut(s) | 2106 |
| Bst2BI | CACGAG | 2 cut(s) | 558, 3621 |
| Bst2UI | CCWGG | 4 cut(s) | 1745, 1832, 3287, 3338 |
| BstAUI | TGTACA | 2 cut(s) | 1542, 2465 |
| BstBAI | YACGTR | 1 cut(s) | 848 |
| BstC8I | GCNNGC | 5 cut(s) | 1503, 1628, 2350, 2360, 3198 |
| BstDSI | CCRYGG | 1 cut(s) | 2592 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1742 |
| BstF5I | GGATG | 8 cut(s) | 1753, 1861, 2190, 2602, 3295, 3493, 3700, 3726 |
| BstH2I | RGCGCY | 2 cut(s) | 802, 2011 |
| BstHHI | GCGC | 3 cut(s) | 210, 801, 2010 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 148, 1720, 2588, 3646 |
| BstNI | CCWGG | 4 cut(s) | 1745, 1832, 3287, 3338 |
| BstNSI | RCATGY | 6 cut(s) | 624, 1106, 1553, 2621, 3014, 3200 |
| BstSCI | CCNGG | 4 cut(s) | 1743, 1830, 3285, 3336 |
| BstSFI | CTRYAG | 3 cut(s) | 140, 228, 2331 |
| BstSLI | GKGCMC | 1 cut(s) | 959 |
| BstV1I | GCAGC | 8 cut(s) | 126, 410, 501, 1005, 1275, 1855, 2345, 2883 |
| BstV2I | GAAGAC | 4 cut(s) | 815, 1986, 2553, 3306 |
| BstX2I | RGATCY | 8 cut(s) | 200, 667, 1603, 2110, 2338, 2707, 2960, 3442 |
| BstYI | RGATCY | 8 cut(s) | 200, 667, 1603, 2110, 2338, 2707, 2960, 3442 |
| Bsu36I | CCTNAGG | 1 cut(s) | 657 |
| BsuRI | GGCC | 2 cut(s) | 957, 3628 |
| BtgI | CCRYGG | 1 cut(s) | 2592 |
| BtgZI | GCGATG | 1 cut(s) | 734 |
| BtsCI | GGATG | 8 cut(s) | 1753, 1861, 2190, 2602, 3295, 3493, 3700, 3726 |
| BtsI | GCAGTG | 1 cut(s) | 3785 |
| BtsIMutI | CAGTG | 6 cut(s) | 759, 1245, 1620, 1696, 2941, 3785 |
| BveI | ACCTGC | 2 cut(s) | 428, 2587 |
| Cac8I | GCNNGC | 5 cut(s) | 1503, 1628, 2350, 2360, 3198 |
| CfoI | GCGC | 3 cut(s) | 210, 801, 2010 |
| Cfr13I | GGNCC | 5 cut(s) | 955, 956, 2310, 2602, 3626 |
| CseI | GACGC | 1 cut(s) | 451 |
| Csp6I | GTAC | 6 cut(s) | 379, 764, 1543, 1617, 2466, 3052 |
| CviQI | GTAC | 6 cut(s) | 379, 764, 1543, 1617, 2466, 3052 |
| DraI | TTTAAA | 1 cut(s) | 2895 |
| DraIII | CACNNNGTG | 2 cut(s) | 1130, 1530 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2308 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2308 |
| EciI | GGCGGA | 1 cut(s) | 3212 |
| Ecl136II | GAGCTC | 2 cut(s) | 345, 1714 |
| Eco130I | CCWWGG | 1 cut(s) | 2106 |
| Eco24I | GRGCYC | 4 cut(s) | 347, 358, 959, 1716 |
| Eco31I | GGTCTC | 3 cut(s) | 410, 1692, 2789 |
| Eco32I | GATATC | 1 cut(s) | 2214 |
| Eco47I | GGWCC | 2 cut(s) | 2310, 2602 |
| Eco47III | AGCGCT | 1 cut(s) | 2009 |
| Eco53kI | GAGCTC | 2 cut(s) | 345, 1714 |
| Eco57I | CTGAAG | 6 cut(s) | 687, 1881, 2466, 2994, 3397, 3578 |
| Eco81I | CCTNAGG | 1 cut(s) | 657 |
| Eco88I | CYCGRG | 1 cut(s) | 3156 |
| EcoICRI | GAGCTC | 2 cut(s) | 345, 1714 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1742 |
| EcoRI | GAATTC | 1 cut(s) | 2854 |
| EcoRII | CCWGG | 4 cut(s) | 1743, 1830, 3285, 3336 |
| EcoRV | GATATC | 1 cut(s) | 2214 |
| EcoT14I | CCWWGG | 1 cut(s) | 2106 |
| EcoT22I | ATGCAT | 1 cut(s) | 1753 |
| EcoT38I | GRGCYC | 4 cut(s) | 347, 358, 959, 1716 |
| ErhI | CCWWGG | 1 cut(s) | 2106 |
| Esp3I | CGTCTC | 3 cut(s) | 903, 1033, 2876 |
| FaqI | GGGAC | 3 cut(s) | 444, 634, 2626 |
| FauI | CCCGC | 1 cut(s) | 470 |
| FauNDI | CATATG | 2 cut(s) | 94, 1792 |
| FbaI | TGATCA | 1 cut(s) | 1798 |
| Fnu4HI | GCNGC | 9 cut(s) | 140, 424, 490, 994, 1264, 1844, 2147, 2334, 2872 |
| FokI | GGATG | 8 cut(s) | 1760, 1868, 2197, 2609, 3302, 3500, 3707, 3733 |
| FriOI | GRGCYC | 4 cut(s) | 347, 358, 959, 1716 |
| Fsp4HI | GCNGC | 9 cut(s) | 140, 424, 490, 994, 1264, 1844, 2147, 2334, 2872 |
| FspBI | CTAG | 6 cut(s) | 252, 273, 495, 1208, 1739, 1812 |
| GlaI | GCGC | 3 cut(s) | 209, 800, 2009 |
| GluI | GCNGC | 9 cut(s) | 140, 424, 490, 994, 1264, 1844, 2147, 2334, 2872 |
| GsuI | CTGGAG | 6 cut(s) | 86, 579, 2032, 2211, 3568, 3747 |
| HaeII | RGCGCY | 2 cut(s) | 802, 2011 |
| HaeIII | GGCC | 2 cut(s) | 957, 3628 |
| HapII | CCGG | 3 cut(s) | 62, 348, 2086 |
| HgaI | GACGC | 1 cut(s) | 451 |
| HhaI | GCGC | 3 cut(s) | 210, 801, 2010 |
| Hin6I | GCGC | 3 cut(s) | 208, 799, 2008 |
| HinP1I | GCGC | 3 cut(s) | 208, 799, 2008 |
| HindIII | AAGCTT | 2 cut(s) | 1050, 2262 |
| HpaII | CCGG | 3 cut(s) | 62, 348, 2086 |
| Hpy166II | GTNNAC | 2 cut(s) | 289, 2466 |
| Hpy8I | GTNNAC | 2 cut(s) | 289, 2466 |
| Hpy99I | CGWCG | 1 cut(s) | 917 |
| HpyCH4IV | ACGT | 2 cut(s) | 847, 1026 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 148, 1720, 2588, 3646 |
| HpySE526I | ACGT | 2 cut(s) | 847, 1026 |
| HspAI | GCGC | 3 cut(s) | 208, 799, 2008 |
| Kpn2I | TCCGGA | 1 cut(s) | 347 |
| KpnI | GGTACC | 1 cut(s) | 1620 |
| Ksp22I | TGATCA | 1 cut(s) | 1798 |
| LguI | GCTCTTC | 3 cut(s) | 335, 631, 957 |
| LmnI | GCTCC | 9 cut(s) | 16, 64, 350, 353, 431, 1963, 2013, 2588, 3646 |
| Lsp1109I | GCAGC | 8 cut(s) | 126, 410, 501, 1005, 1275, 1855, 2345, 2883 |
| LweI | GCATC | 6 cut(s) | 211, 1164, 1220, 1738, 2175, 3711 |
| MaeI | CTAG | 6 cut(s) | 252, 273, 495, 1208, 1739, 1812 |
| MaeII | ACGT | 2 cut(s) | 847, 1026 |
| MfeI | CAATTG | 2 cut(s) | 2058, 3258 |
| MflI | RGATCY | 8 cut(s) | 200, 667, 1603, 2110, 2338, 2707, 2960, 3442 |
| MhlI | GDGCHC | 4 cut(s) | 347, 358, 959, 1716 |
| MlyI | GAGTC | 5 cut(s) | 550, 805, 2987, 3428, 3754 |
| MmeI | TCCRAC | 8 cut(s) | 1047, 1449, 1558, 1917, 1968, 3003, 3417, 3639 |
| Mph1103I | ATGCAT | 1 cut(s) | 1753 |
| MroI | TCCGGA | 1 cut(s) | 347 |
| MroXI | GAANNNNTTC | 4 cut(s) | 931, 1165, 2274, 3270 |
| MslI | CAYNNNNRTG | 3 cut(s) | 753, 1625, 3114 |
| MspA1I | CMGCKG | 1 cut(s) | 1846 |
| MspI | CCGG | 3 cut(s) | 62, 348, 2086 |
| MspR9I | CCNGG | 4 cut(s) | 1745, 1832, 3287, 3338 |
| MunI | CAATTG | 2 cut(s) | 2058, 3258 |
| Mva1269I | GAATGC | 2 cut(s) | 640, 3712 |
| MvaI | CCWGG | 4 cut(s) | 1745, 1832, 3287, 3338 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 148, 1720, 2588, 3646 |
| NdeI | CATATG | 2 cut(s) | 94, 1792 |
| NmeAIII | GCCGAG | 1 cut(s) | 149 |
| NmuCI | GTSAC | 7 cut(s) | 1113, 1174, 1217, 1349, 1441, 1814, 3013 |
| NsiI | ATGCAT | 1 cut(s) | 1753 |
| NspI | RCATGY | 6 cut(s) | 624, 1106, 1553, 2621, 3014, 3200 |
| OliI | CACNNNNGTG | 1 cut(s) | 1625 |
| PaeI | GCATGC | 1 cut(s) | 3200 |
| PaeR7I | CTCGAG | 1 cut(s) | 3156 |
| PciI | ACATGT | 1 cut(s) | 2617 |
| PciSI | GCTCTTC | 3 cut(s) | 335, 631, 957 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 844 |
| PctI | GAATGC | 2 cut(s) | 640, 3712 |
| PdmI | GAANNNNTTC | 4 cut(s) | 931, 1165, 2274, 3270 |
| PflFI | GACNNNGTC | 1 cut(s) | 1739 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 2010, 3691, 3824 |
| PfoI | TCCNGGA | 1 cut(s) | 1743 |
| PkrI | GCNGC | 9 cut(s) | 141, 425, 491, 995, 1265, 1845, 2148, 2335, 2873 |
| PleI | GAGTC | 5 cut(s) | 550, 805, 2986, 3427, 3754 |
| PpsI | GAGTC | 5 cut(s) | 550, 805, 2986, 3427, 3754 |
| Ppu21I | YACGTR | 1 cut(s) | 848 |
| PscI | ACATGT | 1 cut(s) | 2617 |
| PshBI | ATTAAT | 1 cut(s) | 2136 |
| Psp124BI | GAGCTC | 2 cut(s) | 347, 1716 |
| Psp6I | CCWGG | 4 cut(s) | 1743, 1830, 3285, 3336 |
| PspGI | CCWGG | 4 cut(s) | 1743, 1830, 3285, 3336 |
| PspOMI | GGGCCC | 1 cut(s) | 955 |
| PspPI | GGNCC | 5 cut(s) | 955, 956, 2310, 2602, 3626 |
| PspXI | VCTCGAGB | 1 cut(s) | 3156 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2066, 2098 |
| PstI | CTGCAG | 3 cut(s) | 144, 232, 2335 |
| PsuI | RGATCY | 8 cut(s) | 200, 667, 1603, 2110, 2338, 2707, 2960, 3442 |
| PsyI | GACNNNGTC | 1 cut(s) | 1739 |
| PvuII | CAGCTG | 1 cut(s) | 1846 |
| RsaI | GTAC | 6 cut(s) | 380, 765, 1544, 1618, 2467, 3053 |
| RsaNI | GTAC | 6 cut(s) | 379, 764, 1543, 1617, 2466, 3052 |
| RseI | CAYNNNNRTG | 3 cut(s) | 753, 1625, 3114 |
| SacI | GAGCTC | 2 cut(s) | 347, 1716 |
| SapI | GCTCTTC | 3 cut(s) | 335, 631, 957 |
| SatI | GCNGC | 9 cut(s) | 140, 424, 490, 994, 1264, 1844, 2147, 2334, 2872 |
| Sau96I | GGNCC | 5 cut(s) | 955, 956, 2310, 2602, 3626 |
| SchI | GAGTC | 5 cut(s) | 550, 805, 2987, 3428, 3754 |
| ScrFI | CCNGG | 4 cut(s) | 1745, 1832, 3287, 3338 |
| SduI | GDGCHC | 4 cut(s) | 347, 358, 959, 1716 |
| SfaNI | GCATC | 6 cut(s) | 211, 1164, 1220, 1738, 2175, 3711 |
| SfcI | CTRYAG | 3 cut(s) | 140, 228, 2331 |
| Sfr274I | CTCGAG | 1 cut(s) | 3156 |
| SinI | GGWCC | 2 cut(s) | 2310, 2602 |
| SlaI | CTCGAG | 1 cut(s) | 3156 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 753, 1625, 3114 |
| SmlI | CTYRAG | 5 cut(s) | 635, 773, 1709, 2039, 3156 |
| SmoI | CTYRAG | 5 cut(s) | 635, 773, 1709, 2039, 3156 |
| SpeI | ACTAGT | 2 cut(s) | 494, 1811 |
| SphI | GCATGC | 1 cut(s) | 3200 |
| SsiI | CCGC | 5 cut(s) | 463, 1487, 1553, 2146, 3223 |
| SspI | AATATT | 1 cut(s) | 3456 |
| SspMI | CTAG | 6 cut(s) | 252, 273, 495, 1208, 1739, 1812 |
| SstI | GAGCTC | 2 cut(s) | 347, 1716 |
| StyD4I | CCNGG | 4 cut(s) | 1743, 1830, 3285, 3336 |
| StyI | CCWWGG | 1 cut(s) | 2106 |
| TaiI | ACGT | 2 cut(s) | 850, 1029 |
| TaqI | TCGA | 9 cut(s) | 191, 215, 788, 838, 1679, 2327, 2571, 3157, 3172 |
| TatI | WGTACW | 3 cut(s) | 378, 1542, 2465 |
| TauI | GCSGC | 1 cut(s) | 2149 |
| TscAI | CASTG | 6 cut(s) | 766, 1252, 1627, 1696, 2941, 3792 |
| TseFI | GTSAC | 7 cut(s) | 1113, 1174, 1217, 1349, 1441, 1814, 3013 |
| TseI | GCWGC | 8 cut(s) | 139, 423, 489, 993, 1263, 1843, 2333, 2871 |
| Tsp45I | GTSAC | 7 cut(s) | 1113, 1174, 1217, 1349, 1441, 1814, 3013 |
| TspGWI | ACGGA | 1 cut(s) | 2609 |
| TspRI | CASTG | 6 cut(s) | 766, 1252, 1627, 1696, 2941, 3792 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1739 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 2010, 3691, 3824 |
| VpaK11BI | GGWCC | 2 cut(s) | 2310, 2602 |
| VspI | ATTAAT | 1 cut(s) | 2136 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1742 |
| XapI | RAATTY | 4 cut(s) | 317, 1761, 2452, 2854 |
| XceI | RCATGY | 6 cut(s) | 624, 1106, 1553, 2621, 3014, 3200 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 110 |
| XhoI | CTCGAG | 1 cut(s) | 3156 |
| XmnI | GAANNNNTTC | 4 cut(s) | 931, 1165, 2274, 3270 |
| XspI | CTAG | 6 cut(s) | 252, 273, 495, 1208, 1739, 1812 |
| Zsp2I | ATGCAT | 1 cut(s) | 1753 |