Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8241083.1

Orthogroup ID

OG0009530

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 728

Gene Structure 728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8241083.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 598 bp

atggagggaaaagtacataggtttctccatggaacacttgaagctaccatcttccatgccacaccttacataccaccaccattccccttcagttgtatatttggaaatgggaagccagcgtatgtgaccatcaagatagacaacaagaaagtagcaaaaacaacccaagaacgcgaccgcgtttggaaccaaacctttcaaatcctatgtgctcattcatcagattcaaccattaccattacaatgaaaataaaatgcaccatcttggggaaatttcaaatccatgctcatcagatactaagtaaagcaagctttattaatggtaatctccctctcctaacagaaagtgggaagccaaatctagaacttaagctccggttcatgttatggtttaagccggcggaatttgaaccaagttgggggaaaatgattagctatggtgaattccaagggctgaggaatgcaacatttccacagagatccaatagtcatgtcattctttatcaagatgctcatcattgctcaagtttcaagccttcgcctgagttttgtgggactccaagaagactatgggaggatgtatacaaagctattgagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0006808 GO:0006950 GO:0006970 GO:0006995 GO:0007154 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0009056 GO:0009267 GO:0009395 GO:0009605 GO:0009628 GO:0009791 GO:0009825 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016042 GO:0016049 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0022622 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0040007 GO:0042578 GO:0042594 GO:0043562 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044464 GO:0045848 GO:0046434 GO:0048364 GO:0048518 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051301 GO:0051365 GO:0051716 GO:0065007 GO:0071496 GO:0071704 GO:0071944 GO:0099402 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

199

Amino Acids

22.8

Weight (kDa)

9.32

Isoelectric Point (pI)

40.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55180 AT1G55180
fragaria_vesca	FvH4_6g33140
malus_domestica	MD09G1194700.v1.1 MD17G1175200.v1.1
prunus_persica	Prupe.3G051200_v2.0.a1
pyrus_communis	pycom09g11160
rosa_chinensis	RchiOBHm_Chr2g0142831
rosa_laevigata	RLG00000019989
rosa_multiflora	Rmu_co8241083.1_g000001 Rmu_co8446503.1_g000001 Rmu_sc0012306.1_g000009 Rmu_sc0013116.1_g000004
rosa_roxburghii	Rroxscaffold_2G00102280 Rroxscaffold_2G00103320
rosa_rugosa	Rorug02G0375600 Rorug02G0375700
rosa_samantha	Rh2AG428800 Rh2BG438100 Rh2CG414300 Rh2DG447900
rosa_wichuraiana	Rw2G035060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	582
AccII	CGCG	2 cut(s)	174, 180
AciI	CCGC	2 cut(s)	178, 401
AclWI	GGATC	1 cut(s)	474
AcsI	RAATTY	3 cut(s)	272, 404, 443
AcuI	CTGAAG	1 cut(s)	73
AfaI	GTAC	1 cut(s)	15
AfiI	CCNNNNNNNGG	2 cut(s)	267, 419
AflII	CTTAAG	1 cut(s)	368
AgsI	TTSAA	6 cut(s)	41, 200, 228, 278, 410, 532
AloI	GAACNNNNNNTCC	2 cut(s)	357, 389
AluBI	AGCT	5 cut(s)	44, 312, 373, 435, 590
AluI	AGCT	5 cut(s)	44, 312, 373, 435, 590
Alw21I	GWGCWC	1 cut(s)	214
AlwI	GGATC	1 cut(s)	474
ApoI	RAATTY	3 cut(s)	272, 404, 443
AseI	ATTAAT	1 cut(s)	318
AsuHPI	GGTGA	1 cut(s)	452
BbsI	GAAGAC	1 cut(s)	571
Bbv12I	GWGCWC	1 cut(s)	214
BbvCI	CCTCAGC	1 cut(s)	455
BccI	CCATC	3 cut(s)	56, 137, 269
BfaI	CTAG	1 cut(s)	362
BfrI	CTTAAG	1 cut(s)	368
BmiI	GGNNCC	1 cut(s)	188
BmsI	GCATC	1 cut(s)	499
BpiI	GAAGAC	1 cut(s)	571
Bpu10I	CCTNAGC	1 cut(s)	455
BpuEI	CTTGAG	1 cut(s)	508
BsaBI	GATNNNNATC	1 cut(s)	513
BsaJI	CCNNGG	2 cut(s)	28, 448
BsaWI	WCCGGW	1 cut(s)	375
BsaXI	ACNNNNNCTCC	2 cut(s)	357, 387
Bsc4I	CCNNNNNNNGG	2 cut(s)	267, 419
Bse118I	RCCGGY	1 cut(s)	397
Bse3DI	GCAATG	1 cut(s)	517
Bse8I	GATNNNNATC	1 cut(s)	513
BseDI	CCNNGG	2 cut(s)	28, 448
BseGI	GGATG	1 cut(s)	583
BseJI	GATNNNNATC	1 cut(s)	513
BseLI	CCNNNNNNNGG	2 cut(s)	267, 419
BseMI	GCAATG	1 cut(s)	517
BseMII	CTCAG	2 cut(s)	446, 534
Bsh1236I	CGCG	2 cut(s)	174, 180
Bsh1285I	CGRYCG	1 cut(s)	178
BsiEI	CGRYCG	1 cut(s)	178
BsiHKAI	GWGCWC	1 cut(s)	214
BsiSI	CCGG	2 cut(s)	376, 398
BslFI	GGGAC	1 cut(s)	568
BslI	CCNNNNNNNGG	2 cut(s)	267, 419
BsmFI	GGGAC	1 cut(s)	568
BsmI	GAATGC	1 cut(s)	466
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp143I	GATC	1 cut(s)	479
Bsp19I	CCATGG	1 cut(s)	28
BspACI	CCGC	2 cut(s)	178, 401
BspCNI	CTCAG	2 cut(s)	447, 535
BspFNI	CGCG	2 cut(s)	174, 180
BspLI	GGNNCC	1 cut(s)	188
BspPI	GGATC	1 cut(s)	474
BspTI	CTTAAG	1 cut(s)	368
BsrDI	GCAATG	1 cut(s)	517
BsrFI	RCCGGY	1 cut(s)	397
BssAI	RCCGGY	1 cut(s)	397
BssECI	CCNNGG	2 cut(s)	28, 448
BssMI	GATC	1 cut(s)	479
BssNAI	GTATAC	1 cut(s)	583
BssT1I	CCWWGG	2 cut(s)	28, 448
Bst1107I	GTATAC	1 cut(s)	583
BstAFI	CTTAAG	1 cut(s)	368
BstC8I	GCNNGC	3 cut(s)	117, 310, 399
BstDEI	CTNAG	3 cut(s)	299, 455, 543
BstDSI	CCRYGG	1 cut(s)	28
BstF5I	GGATG	1 cut(s)	583
BstFNI	CGCG	2 cut(s)	174, 180
BstKTI	GATC	1 cut(s)	482
BstMBI	GATC	1 cut(s)	479
BstMCI	CGRYCG	1 cut(s)	178
BstUI	CGCG	2 cut(s)	174, 180
BstV2I	GAAGAC	1 cut(s)	571
BstX2I	RGATCY	1 cut(s)	479
BstYI	RGATCY	1 cut(s)	479
BstZ17I	GTATAC	1 cut(s)	583
BtgI	CCRYGG	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	583
Cac8I	GCNNGC	3 cut(s)	117, 310, 399
Cfr10I	RCCGGY	1 cut(s)	397
Csp6I	GTAC	1 cut(s)	14
CviAII	CATG	5 cut(s)	29, 56, 284, 382, 491
CviQI	GTAC	1 cut(s)	14
DdeI	CTNAG	3 cut(s)	299, 455, 543
DpnI	GATC	1 cut(s)	481
DpnII	GATC	1 cut(s)	479
EciI	GGCGGA	1 cut(s)	416
Eco130I	CCWWGG	2 cut(s)	28, 448
Eco57I	CTGAAG	1 cut(s)	73
EcoRI	GAATTC	1 cut(s)	443
EcoT14I	CCWWGG	2 cut(s)	28, 448
ErhI	CCWWGG	2 cut(s)	28, 448
FaeI	CATG	5 cut(s)	32, 59, 287, 385, 494
FaqI	GGGAC	1 cut(s)	568
FatI	CATG	5 cut(s)	28, 55, 283, 381, 490
FblI	GTMKAC	1 cut(s)	582
FokI	GGATG	1 cut(s)	590
FspBI	CTAG	1 cut(s)	362
HapII	CCGG	2 cut(s)	376, 398
Hin1II	CATG	5 cut(s)	32, 59, 287, 385, 494
HindIII	AAGCTT	1 cut(s)	310
HinfI	GANTC	2 cut(s)	224, 556
HpaII	CCGG	2 cut(s)	376, 398
HphI	GGTGA	1 cut(s)	452
Hpy166II	GTNNAC	1 cut(s)	583
Hpy188I	TCNGA	2 cut(s)	223, 294
Hpy188III	TCNNGA	3 cut(s)	133, 362, 506
Hpy8I	GTNNAC	1 cut(s)	583
HpyAV	CCTTC	2 cut(s)	97, 546
HpyCH4V	TGCA	2 cut(s)	258, 464
HpyF3I	CTNAG	3 cut(s)	299, 455, 543
Hsp92II	CATG	5 cut(s)	32, 59, 287, 385, 494
KroI	GCCGGC	1 cut(s)	397
KroNI	GCCGGC	1 cut(s)	399
Kzo9I	GATC	1 cut(s)	479
LmnI	GCTCC	1 cut(s)	378
LpnPI	CCDG	4 cut(s)	129, 389, 411, 555
LweI	GCATC	1 cut(s)	499
MaeI	CTAG	1 cut(s)	362
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	1 cut(s)	481
MboI	GATC	1 cut(s)	479
MboII	GAAGA	2 cut(s)	43, 576
MflI	RGATCY	1 cut(s)	479
MhlI	GDGCHC	1 cut(s)	214
MluCI	AATT	3 cut(s)	272, 404, 443
MlyI	GAGTC	1 cut(s)	550
MnlI	CCTC	4 cut(s)	342, 450, 568, 589
MroNI	GCCGGC	1 cut(s)	397
MseI	TTAA	3 cut(s)	318, 369, 393
MslI	CAYNNNNRTG	1 cut(s)	242
MspCI	CTTAAG	1 cut(s)	368
MspI	CCGG	2 cut(s)	376, 398
Mva1269I	GAATGC	1 cut(s)	466
MvnI	CGCG	2 cut(s)	174, 180
NaeI	GCCGGC	1 cut(s)	399
NcoI	CCATGG	1 cut(s)	28
NdeII	GATC	1 cut(s)	479
NgoMIV	GCCGGC	1 cut(s)	397
NlaIII	CATG	5 cut(s)	32, 59, 287, 385, 494
NlaIV	GGNNCC	1 cut(s)	188
NmuCI	GTSAC	1 cut(s)	124
PctI	GAATGC	1 cut(s)	466
PdiI	GCCGGC	1 cut(s)	399
PfeI	GAWTC	1 cut(s)	224
PleI	GAGTC	1 cut(s)	550
PpsI	GAGTC	1 cut(s)	550
PshBI	ATTAAT	1 cut(s)	318
PspN4I	GGNNCC	1 cut(s)	188
PsuI	RGATCY	1 cut(s)	479
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
RseI	CAYNNNNRTG	1 cut(s)	242
SaqAI	TTAA	3 cut(s)	318, 369, 393
Sau3AI	GATC	1 cut(s)	479
SchI	GAGTC	1 cut(s)	550
SduI	GDGCHC	1 cut(s)	214
SetI	ASST	8 cut(s)	23, 46, 67, 197, 314, 375, 437, 592
SfaNI	GCATC	1 cut(s)	499
SmiMI	CAYNNNNRTG	1 cut(s)	242
SmlI	CTYRAG	2 cut(s)	368, 523
SmoI	CTYRAG	2 cut(s)	368, 523
Sse9I	AATT	3 cut(s)	272, 404, 443
SsiI	CCGC	2 cut(s)	178, 401
SspMI	CTAG	1 cut(s)	362
StyI	CCWWGG	2 cut(s)	28, 448
TasI	AATT	3 cut(s)	272, 404, 443
TatI	WGTACW	1 cut(s)	13
TfiI	GAWTC	1 cut(s)	224
Tru1I	TTAA	3 cut(s)	318, 369, 393
Tru9I	TTAA	3 cut(s)	318, 369, 393
TseFI	GTSAC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	3 cut(s)	207, 260, 370
Vha464I	CTTAAG	1 cut(s)	368
VspI	ATTAAT	1 cut(s)	318
XapI	RAATTY	3 cut(s)	272, 404, 443
XbaI	TCTAGA	1 cut(s)	361
XcmI	CCANNNNNNNNNTGG	1 cut(s)	567
XmiI	GTMKAC	1 cut(s)	582
XspI	CTAG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.