Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8446503.1

Orthogroup ID

OG0009530

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1302

Gene Structure 1302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8446503.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1061 bp

atgagcttcattggtgggctggatctatgtgatgggcgctatgacaccgagcaacattcattgttccacacactcaacacagaatcacattgctatgatttctaccagacgaacattgcggggtctagcctccaaaaaggagggccaagaacaccatggcacgatgctcatgcttgtataaccggggaggctgcttgggatgtgctaacgaatttcgagcaacgatggagtaaacaatgtgatccttctgtactggttcctgctagcaccttaacaagcttgattcggcagacttatgcaagcaaaccctctgaaaggggttggaatgttcaagtgctcagatcaattgaccacgtttcggcgtcccaattgttccgaaacttaactgtggagcaaagcattcatgaggcttatgtgaaagcaattagaggtgccgacaggtttatctacattgagaaccaatatttcataggagggtgtcatttgtgggagagggaccaacattgtgggtgtataaacttgattccaattgagattgcactcaaggtggccaataagataaaagcaaaggagcggtttggagtgtacatagtaataccaatgtggccagaaggtctacctgagagtgaatcagttcaggatatacttcatttgactagagaaacaatgtcaatgatgtataagatgattggagaagctataaaagaaagtgggactcaggagcacccaagagactatttgaacttctattgccttgccaatagagaagtagagacacaaggagactttgtccctccacattctcctcacagtggaacacagtactggaatgcacagaagcataggaggttcatggtgtatgttcactccaagctcatgatagtggacgatgcataccttatcataggatctgcaaacataaaccaaagatcaatggatggaaaacgagacaccgagattgccatcggatgctaccagacaatcagagacgatgatcatgacagcaagactataaggatgagctctacaggggacattggagcataccgaatgtcattatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0006808 GO:0006950 GO:0006970 GO:0006995 GO:0007154 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0009056 GO:0009267 GO:0009395 GO:0009605 GO:0009628 GO:0009791 GO:0009825 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016042 GO:0016049 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0022622 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0040007 GO:0042578 GO:0042594 GO:0043562 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044464 GO:0045848 GO:0046434 GO:0048364 GO:0048518 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051301 GO:0051365 GO:0051716 GO:0065007 GO:0071496 GO:0071704 GO:0071944 GO:0099402 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

353

Amino Acids

40.32

Weight (kDa)

6.05

Isoelectric Point (pI)

47.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55180 AT1G55180
fragaria_vesca	FvH4_6g33140
malus_domestica	MD09G1194700.v1.1 MD17G1175200.v1.1
prunus_persica	Prupe.3G051200_v2.0.a1
pyrus_communis	pycom09g11160
rosa_chinensis	RchiOBHm_Chr2g0142831
rosa_laevigata	RLG00000019989
rosa_multiflora	Rmu_co8241083.1_g000001 Rmu_co8446503.1_g000001 Rmu_sc0012306.1_g000009 Rmu_sc0013116.1_g000004
rosa_roxburghii	Rroxscaffold_2G00102280 Rroxscaffold_2G00103320
rosa_rugosa	Rorug02G0375600 Rorug02G0375700
rosa_samantha	Rh2AG428800 Rh2BG438100 Rh2CG414300 Rh2DG447900
rosa_wichuraiana	Rw2G035060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	431
AccBSI	CCGCTC	1 cut(s)	574
AccI	GTMKAC	1 cut(s)	616
AciI	CCGC	2 cut(s)	119, 574
AclWI	GGATC	3 cut(s)	30, 236, 916
AcoI	YGGCCR	2 cut(s)	549, 605
AcsI	RAATTY	1 cut(s)	211
AcyI	GRCGYC	1 cut(s)	362
AfaI	GTAC	3 cut(s)	252, 587, 824
AfiI	CCNNNNNNNGG	3 cut(s)	315, 358, 812
AgsI	TTSAA	2 cut(s)	332, 742
AluBI	AGCT	5 cut(s)	6, 279, 698, 874, 1023
AluI	AGCT	5 cut(s)	6, 279, 698, 874, 1023
Alw21I	GWGCWC	3 cut(s)	339, 726, 1025
Alw26I	GTCTC	5 cut(s)	726, 767, 777, 942, 981
AlwI	GGATC	3 cut(s)	30, 236, 916
AoxI	GGCC	3 cut(s)	143, 549, 605
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	211
Asp700I	GAANNNNTTC	1 cut(s)	633
AspLEI	GCGC	1 cut(s)	39
AspS9I	GGNCC	2 cut(s)	143, 496
AsuC2I	CCSGG	1 cut(s)	184
AsuNHI	GCTAGC	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	496
BalI	TGGCCA	2 cut(s)	551, 607
BanI	GGYRCC	1 cut(s)	431
BanII	GRGCYC	1 cut(s)	1025
Bbv12I	GWGCWC	3 cut(s)	339, 726, 1025
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	4 cut(s)	26, 219, 932, 971
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BclI	TGATCA	1 cut(s)	994
BcnI	CCSGG	1 cut(s)	184
BcoDI	GTCTC	5 cut(s)	726, 767, 777, 942, 981
BfaI	CTAG	3 cut(s)	126, 264, 657
BfmI	CTRYAG	1 cut(s)	1026
BfoI	RGCGCY	1 cut(s)	40
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
BmcAI	AGTACT	1 cut(s)	824
Bme1390I	CCNGG	1 cut(s)	184
Bme18I	GGWCC	1 cut(s)	496
BmgT120I	GGNCC	2 cut(s)	143, 496
BmiI	GGNNCC	3 cut(s)	258, 433, 497
BmrFI	CCNGG	1 cut(s)	184
BmsI	GCATC	3 cut(s)	154, 880, 959
BmtI	GCTAGC	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	527
BpuMI	CCSGG	1 cut(s)	184
BsaBI	GATNNNNATC	1 cut(s)	962
BsaHI	GRCGYC	1 cut(s)	362
BsaJI	CCNNGG	2 cut(s)	155, 183
BsaXI	ACNNNNNCTCC	2 cut(s)	774, 804
Bsc4I	CCNNNNNNNGG	3 cut(s)	315, 358, 812
Bse1I	ACTGG	2 cut(s)	258, 830
Bse3DI	GCAATG	2 cut(s)	88, 114
Bse8I	GATNNNNATC	1 cut(s)	962
BseDI	CCNNGG	2 cut(s)	155, 183
BseGI	GGATG	4 cut(s)	205, 943, 974, 1023
BseJI	GATNNNNATC	1 cut(s)	962
BseLI	CCNNNNNNNGG	3 cut(s)	315, 358, 812
BseMI	GCAATG	2 cut(s)	88, 114
BseMII	CTCAG	3 cut(s)	352, 612, 731
BseNI	ACTGG	2 cut(s)	258, 830
BseRI	GAGGAG	1 cut(s)	795
BseXI	GCAGC	1 cut(s)	178
BshFI	GGCC	3 cut(s)	145, 551, 607
BshNI	GGYRCC	1 cut(s)	431
BsiHKAI	GWGCWC	3 cut(s)	339, 726, 1025
BsiSI	CCGG	1 cut(s)	183
BslFI	GGGAC	5 cut(s)	349, 509, 727, 776, 1046
BslI	CCNNNNNNNGG	3 cut(s)	315, 358, 812
BsmAI	GTCTC	5 cut(s)	726, 767, 777, 942, 981
BsmBI	CGTCTC	1 cut(s)	981
BsmFI	GGGAC	5 cut(s)	349, 509, 727, 776, 1046
BsmI	GAATGC	2 cut(s)	399, 835
BsnI	GGCC	3 cut(s)	145, 551, 607
Bsp1286I	GDGCHC	3 cut(s)	339, 726, 1025
Bsp1407I	TGTACA	1 cut(s)	585
Bsp143I	GATC	6 cut(s)	22, 241, 341, 908, 929, 994
Bsp19I	CCATGG	1 cut(s)	155
BspACI	CCGC	2 cut(s)	119, 574
BspANI	GGCC	3 cut(s)	145, 551, 607
BspCNI	CTCAG	3 cut(s)	351, 613, 730
BspHI	TCATGA	3 cut(s)	403, 876, 997
BspLI	GGNNCC	3 cut(s)	258, 433, 497
BspOI	GCTAGC	1 cut(s)	267
BspPI	GGATC	3 cut(s)	30, 236, 916
BspT107I	GGYRCC	1 cut(s)	431
BsrBI	CCGCTC	1 cut(s)	574
BsrDI	GCAATG	2 cut(s)	88, 114
BsrGI	TGTACA	1 cut(s)	585
BsrI	ACTGG	2 cut(s)	258, 830
BssECI	CCNNGG	2 cut(s)	155, 183
BssMI	GATC	6 cut(s)	22, 241, 341, 908, 929, 994
BssNI	GRCGYC	1 cut(s)	362
BssT1I	CCWWGG	1 cut(s)	155
Bst4CI	ACNGT	3 cut(s)	388, 812, 822
BstACI	GRCGYC	1 cut(s)	362
BstAUI	TGTACA	1 cut(s)	585
BstC8I	GCNNGC	2 cut(s)	265, 301
BstDEI	CTNAG	3 cut(s)	338, 621, 717
BstDSI	CCRYGG	1 cut(s)	155
BstENI	CCTNNNNNAGG	1 cut(s)	313
BstF5I	GGATG	4 cut(s)	205, 943, 974, 1023
BstH2I	RGCGCY	1 cut(s)	40
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	6 cut(s)	25, 244, 344, 911, 932, 997
BstMAI	GTCTC	5 cut(s)	726, 767, 777, 942, 981
BstMBI	GATC	6 cut(s)	22, 241, 341, 908, 929, 994
BstSCI	CCNGG	1 cut(s)	182
BstSFI	CTRYAG	1 cut(s)	1026
BstV1I	GCAGC	1 cut(s)	178
BstX2I	RGATCY	2 cut(s)	22, 908
BstXI	CCANNNNNNTGG	1 cut(s)	506
BstYI	RGATCY	2 cut(s)	22, 908
BsuRI	GGCC	3 cut(s)	145, 551, 607
BtgI	CCRYGG	1 cut(s)	155
BtsCI	GGATG	4 cut(s)	205, 943, 974, 1023
BtsIMutI	CAGTG	1 cut(s)	817
Cac8I	GCNNGC	2 cut(s)	265, 301
CciI	TCATGA	3 cut(s)	403, 876, 997
CfoI	GCGC	1 cut(s)	39
Cfr13I	GGNCC	2 cut(s)	143, 496
CseI	GACGC	1 cut(s)	351
Csp6I	GTAC	3 cut(s)	251, 586, 823
CviAII	CATG	6 cut(s)	156, 170, 404, 853, 877, 998
CviQI	GTAC	3 cut(s)	251, 586, 823
DdeI	CTNAG	3 cut(s)	338, 621, 717
DpnI	GATC	6 cut(s)	24, 243, 343, 910, 931, 996
DpnII	GATC	6 cut(s)	22, 241, 341, 908, 929, 994
EaeI	YGGCCR	2 cut(s)	549, 605
Ecl136II	GAGCTC	1 cut(s)	1023
Eco130I	CCWWGG	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	1025
Eco47I	GGWCC	1 cut(s)	496
Eco53kI	GAGCTC	1 cut(s)	1023
EcoICRI	GAGCTC	1 cut(s)	1023
EcoNI	CCTNNNNNAGG	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	155
EcoT22I	ATGCAT	1 cut(s)	895
EcoT38I	GRGCYC	1 cut(s)	1025
ErhI	CCWWGG	1 cut(s)	155
Esp3I	CGTCTC	1 cut(s)	981
FaeI	CATG	6 cut(s)	159, 173, 407, 856, 880, 1001
FaqI	GGGAC	5 cut(s)	349, 509, 727, 776, 1046
FatI	CATG	6 cut(s)	155, 169, 403, 852, 876, 997
FauI	CCCGC	1 cut(s)	112
FbaI	TGATCA	1 cut(s)	994
FblI	GTMKAC	1 cut(s)	616
Fnu4HI	GCNGC	1 cut(s)	192
FokI	GGATG	4 cut(s)	212, 950, 981, 1030
FriOI	GRGCYC	1 cut(s)	1025
Fsp4HI	GCNGC	1 cut(s)	192
FspBI	CTAG	3 cut(s)	126, 264, 657
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	1 cut(s)	192
HaeII	RGCGCY	1 cut(s)	40
HaeIII	GGCC	3 cut(s)	145, 551, 607
HapII	CCGG	1 cut(s)	183
HgaI	GACGC	1 cut(s)	351
HhaI	GCGC	1 cut(s)	39
Hin1I	GRCGYC	1 cut(s)	362
Hin1II	CATG	6 cut(s)	159, 173, 407, 856, 880, 1001
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HindIII	AAGCTT	1 cut(s)	277
HinfI	GANTC	5 cut(s)	83, 283, 523, 629, 715
HpaII	CCGG	1 cut(s)	183
Hpy166II	GTNNAC	5 cut(s)	233, 586, 617, 865, 886
Hpy188I	TCNGA	5 cut(s)	313, 341, 377, 968, 986
Hpy188III	TCNNGA	5 cut(s)	404, 638, 719, 877, 998
Hpy8I	GTNNAC	5 cut(s)	233, 586, 617, 865, 886
HpyAV	CCTTC	2 cut(s)	255, 605
HpyCH4III	ACNGT	3 cut(s)	388, 812, 822
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	5 cut(s)	299, 539, 833, 893, 914
HpyF3I	CTNAG	3 cut(s)	338, 621, 717
HpySE526I	ACGT	1 cut(s)	354
Hsp92I	GRCGYC	1 cut(s)	362
Hsp92II	CATG	6 cut(s)	159, 173, 407, 856, 880, 1001
HspAI	GCGC	1 cut(s)	37
Ksp22I	TGATCA	1 cut(s)	994
Kzo9I	GATC	6 cut(s)	22, 241, 341, 908, 929, 994
LmnI	GCTCC	4 cut(s)	391, 571, 721, 1040
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	3 cut(s)	154, 880, 959
MaeI	CTAG	3 cut(s)	126, 264, 657
MaeII	ACGT	1 cut(s)	354
MalI	GATC	6 cut(s)	24, 243, 343, 910, 931, 996
MbiI	CCGCTC	1 cut(s)	574
MboI	GATC	6 cut(s)	22, 241, 341, 908, 929, 994
MfeI	CAATTG	3 cut(s)	345, 368, 528
MflI	RGATCY	2 cut(s)	22, 908
MhlI	GDGCHC	3 cut(s)	339, 726, 1025
MlsI	TGGCCA	2 cut(s)	551, 607
MluCI	AATT	5 cut(s)	211, 345, 368, 423, 528
MluNI	TGGCCA	2 cut(s)	551, 607
MlyI	GAGTC	1 cut(s)	709
MmeI	TCCRAC	1 cut(s)	302
Mox20I	TGGCCA	2 cut(s)	551, 607
Mph1103I	ATGCAT	1 cut(s)	895
MroXI	GAANNNNTTC	1 cut(s)	633
MscI	TGGCCA	2 cut(s)	551, 607
MseI	TTAA	2 cut(s)	272, 383
MslI	CAYNNNNRTG	2 cut(s)	93, 881
Msp20I	TGGCCA	2 cut(s)	551, 607
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	184
MunI	CAATTG	3 cut(s)	345, 368, 528
Mva1269I	GAATGC	2 cut(s)	399, 835
NciI	CCSGG	1 cut(s)	184
NcoI	CCATGG	1 cut(s)	155
NdeII	GATC	6 cut(s)	22, 241, 341, 908, 929, 994
NheI	GCTAGC	1 cut(s)	263
NlaIII	CATG	6 cut(s)	159, 173, 407, 856, 880, 1001
NlaIV	GGNNCC	3 cut(s)	258, 433, 497
NsiI	ATGCAT	1 cut(s)	895
PagI	TCATGA	3 cut(s)	403, 876, 997
PctI	GAATGC	2 cut(s)	399, 835
PdmI	GAANNNNTTC	1 cut(s)	633
PfeI	GAWTC	4 cut(s)	83, 283, 523, 629
PflFI	GACNNNGTC	1 cut(s)	788
PkrI	GCNGC	1 cut(s)	193
PleI	GAGTC	1 cut(s)	709
PpsI	GAGTC	1 cut(s)	709
Psp124BI	GAGCTC	1 cut(s)	1025
PspN4I	GGNNCC	3 cut(s)	258, 433, 497
PspPI	GGNCC	2 cut(s)	143, 496
PsuI	RGATCY	2 cut(s)	22, 908
PsyI	GACNNNGTC	1 cut(s)	788
RsaI	GTAC	3 cut(s)	252, 587, 824
RsaNI	GTAC	3 cut(s)	251, 586, 823
RseI	CAYNNNNRTG	2 cut(s)	93, 881
SacI	GAGCTC	1 cut(s)	1025
SaqAI	TTAA	2 cut(s)	272, 383
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	6 cut(s)	22, 241, 341, 908, 929, 994
Sau96I	GGNCC	2 cut(s)	143, 496
ScaI	AGTACT	1 cut(s)	824
SchI	GAGTC	1 cut(s)	709
ScrFI	CCNGG	1 cut(s)	184
SduI	GDGCHC	3 cut(s)	339, 726, 1025
SfaNI	GCATC	3 cut(s)	154, 880, 959
SfcI	CTRYAG	1 cut(s)	1026
SinI	GGWCC	1 cut(s)	496
SmiMI	CAYNNNNRTG	2 cut(s)	93, 881
SmlI	CTYRAG	1 cut(s)	542
SmoI	CTYRAG	1 cut(s)	542
Sse9I	AATT	5 cut(s)	211, 345, 368, 423, 528
SsiI	CCGC	2 cut(s)	119, 574
SspI	AATATT	1 cut(s)	464
SspMI	CTAG	3 cut(s)	126, 264, 657
SstI	GAGCTC	1 cut(s)	1025
StyD4I	CCNGG	1 cut(s)	182
StyI	CCWWGG	1 cut(s)	155
TaaI	ACNGT	3 cut(s)	388, 812, 822
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	1 cut(s)	216
TasI	AATT	5 cut(s)	211, 345, 368, 423, 528
TatI	WGTACW	3 cut(s)	250, 585, 822
TfiI	GAWTC	4 cut(s)	83, 283, 523, 629
Tru1I	TTAA	2 cut(s)	272, 383
Tru9I	TTAA	2 cut(s)	272, 383
TscAI	CASTG	1 cut(s)	817
TseI	GCWGC	1 cut(s)	191
TspDTI	ATGAA	5 cut(s)	48, 392, 457, 638, 841
TspRI	CASTG	1 cut(s)	817
Tth111I	GACNNNGTC	1 cut(s)	788
VpaK11BI	GGWCC	1 cut(s)	496
XagI	CCTNNNNNAGG	1 cut(s)	313
XapI	RAATTY	1 cut(s)	211
XcmI	CCANNNNNNNNNTGG	1 cut(s)	153
XmiI	GTMKAC	1 cut(s)	616
XmnI	GAANNNNTTC	1 cut(s)	633
XspI	CTAG	3 cut(s)	126, 264, 657
ZrmI	AGTACT	1 cut(s)	824
Zsp2I	ATGCAT	1 cut(s)	895

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.