Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009530

Physical Location & Seq

Genomic Coordinates Reverse (-)

24321660 .. 24324457

Gene Structure 2798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00102280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2007 bp

ATGGAGGGAAAAGTACATAGGTTTCTCCATGGAACACTTGAAGCTACCATCTTCCATGCCACACCTTACATACCACCACCATTCCCCTTCAATTGTATATTTGGAAATGGGAAGCCAGCGTATGTGACCATCAAGATAGACAACAAGAAAGTAGCAAAAACAACCCATGAACGCGACCGCAGATCCAATAGTCATGTCATTCTTTATCAAGATGCTCACCATTGCTCAAGTTTCAAGCCTTCGCCTGAGTTTTGTGGCACTCCAAGAAGACTATGGGAGGATGTATACAAAGCAATTGAGGGTGCAGAACATTTTATTTACATAGCAGGCTGGTCTTTTAATCCAAAAATGGTCCTGGTCAGGGATCCTCAAACAGCAATCCCACATGCAAGAGGAGTGAAGCTTGGTGAACTTTTGAAACAGAAAGCTGAGGAAGGCGTGGCGGTGAGAATTATGCTTTGGGATGATGAAACATCTTTACCACTTATCAAGAATGAAGGAATTATGAGAACACATGATGAAGATGCATTTGCCTACTTTTCACACACCAAAGTAGTGTGCAAATTGTGCCCAAGGTTGCACCGTAAGTTCCCCACAATCTTCTCTCACCATCAGAAAACAATAACAGTAGACACTAAATGTTGCATTAGTCCAAGGGAGAGAGAAATTATGAGCTTCATTGGTGGGCTGGATCTATGTGATGGGCGCTATGACACCGAGCAACATTCATTGTTCCACACACTCAACACAGAATCACATTGCTATGATTTCTACCAGACGAACATTGCTGGGTCTAGCCTCCAAAAAGGAGGGCCAAGAACACCATGGCACGATGCCCATGCTTGTATAACCGGGGAGGCTGCTTGGGATGTGCTAACGAATTTCGAGCAACGATGGAGTAAACAATGTGATCCTTCTGTATTGGTTCCTGCTAGCACCTTAACAAGCTTGATTCGGCAGACTTATGCAAGTAAACCCTCCGAAAGGGGTTGGAATGTTCAAGTGCTCAGATCAATTGACCACGTTTCGGCTTCCCAATTGTTCCGAAACTTGACTGTGGAGCAAAGCATTCATGAGGCTTATGTGAAAGCAATTAGAGGTGCCGATAGGTTTATCTACATTGAGAACCAATATTTCATAGGAGGGTGTCATTTGTGGGAGAGGGACCAACATTGTGGGTGTATAAACTTGATTCCAATTGAGATTGCACTCAAGGTGGCCAATAAGATAAAAGCAAAGGAGCGGTTTGGAGTGTACATAGTAATACCAATGTGGCCAGAAGGTCTACCTGAGAGTGAATCAGTTCAGGATATACTTCATTTGACTAGAGAAACAATGTCAATGATGTATAAGATGATTGGAGAAGCTATAAAAGAAAGTGGGACTCAGGAGCACCCAAGAGACTATTTGAACTTCTATTGCCTTGCCAATAGAGAAGTAGAGACACAAGGAGACTTTGTCCCTCCACATTCTCCTCACAATGGAACACAGTACTGGAATGCACAGAAGCATAGGAGGTTCATGGTGTATGTTCACTCCAAGCTCATGATAGTGGACGATGCATACCTTATCATAGGATCTGCAAACATAAACCAAAGATCAATGGATGGAAAACGAGACACCGAGATTGCCATCGGATGCTACCAGACAATCAGAGACGATGATCATGACAACAAGACTATAAGGATGAGCTCTACAGGGGACATTGGAGCATACCGAATGTCATTATGGTACGAGCACACAGGCCGCGCTGAAGAGTTGTACGAACACCCCGAAAGCTTAGAATGCGTGAAGACGGTGCGTTACATCGGAGACCAGATGTGGAAAACTTACAGCGGTGAAGAAGTGGTCGACATGGAAGGTGTTCACCTTGTGACATACCCTGTGAGTGTAACAGAGGATGGTTTTGTTGAGGAGCTTGTGGAAGGAGGTGGTCTTTTTCCTGATACAAAGAGTTTGGTTAAGGGCAAGAGATCAAAAGTTCTACTGCCAATATTTACTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0006808 GO:0006950 GO:0006970 GO:0006995 GO:0007154 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0009056 GO:0009267 GO:0009395 GO:0009605 GO:0009628 GO:0009791 GO:0009825 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016042 GO:0016049 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0022622 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0040007 GO:0042578 GO:0042594 GO:0043562 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044464 GO:0045848 GO:0046434 GO:0048364 GO:0048518 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051301 GO:0051365 GO:0051716 GO:0065007 GO:0071496 GO:0071704 GO:0071944 GO:0099402 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

668

Amino Acids

76.47

Weight (kDa)

6.43

Isoelectric Point (pI)

41.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLDc_2	PF13091	507 - 545	1.5e-06	PLD-like domain
PLDc	PF00614	511 - 534	1e-06	Phospholipase D Active site motif
PLD_C	PF12357	585 - 657	1.1e-23	Phospholipase D C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55180 AT1G55180
fragaria_vesca	FvH4_6g33140
malus_domestica	MD09G1194700.v1.1 MD17G1175200.v1.1
prunus_persica	Prupe.3G051200_v2.0.a1
pyrus_communis	pycom09g11160
rosa_chinensis	RchiOBHm_Chr2g0142831
rosa_laevigata	RLG00000019989
rosa_multiflora	Rmu_co8241083.1_g000001 Rmu_co8446503.1_g000001 Rmu_sc0012306.1_g000009 Rmu_sc0013116.1_g000004
rosa_roxburghii	Rroxscaffold_2G00102280 Rroxscaffold_2G00103320
rosa_rugosa	Rorug02G0375600 Rorug02G0375700
rosa_samantha	Rh2AG428800 Rh2BG438100 Rh2CG414300 Rh2DG447900
rosa_wichuraiana	Rw2G035060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1100
AccBSI	CCGCTC	1 cut(s)	1243
AccI	GTMKAC	4 cut(s)	285, 630, 1285, 1851
AccII	CGCG	2 cut(s)	174, 1749
AciI	CCGC	5 cut(s)	178, 443, 1243, 1747, 1836
AclWI	GGATC	6 cut(s)	177, 359, 372, 699, 905, 1585
AcoI	YGGCCR	2 cut(s)	1218, 1274
AcsI	RAATTY	1 cut(s)	880
AcuI	CTGAAG	1 cut(s)	1773
AdeI	CACNNNGTG	1 cut(s)	1873
AfaI	GTAC	5 cut(s)	15, 1256, 1493, 1733, 1763
AfiI	CCNNNNNNNGG	4 cut(s)	361, 984, 1027, 1481
AgsI	TTSAA	6 cut(s)	41, 91, 235, 418, 1001, 1411
AjnI	CCWGG	1 cut(s)	354
AjuI	GAANNNNNNNTTGG	2 cut(s)	442, 474
Alw21I	GWGCWC	4 cut(s)	1008, 1395, 1694, 1740
Alw26I	GTCTC	6 cut(s)	1395, 1436, 1446, 1611, 1650, 1806
AlwI	GGATC	6 cut(s)	177, 359, 372, 699, 905, 1585
AoxI	GGCC	4 cut(s)	812, 1218, 1274, 1744
ApeKI	GCWGC	1 cut(s)	860
ApoI	RAATTY	1 cut(s)	880
Asp700I	GAANNNNTTC	2 cut(s)	1302, 1863
AspLEI	GCGC	2 cut(s)	708, 1751
AspS9I	GGNCC	3 cut(s)	352, 812, 1165
AsuC2I	CCSGG	1 cut(s)	853
AsuHPI	GGTGA	6 cut(s)	209, 419, 457, 599, 1850, 1859
AsuNHI	GCTAGC	1 cut(s)	932
AvaII	GGWCC	2 cut(s)	352, 1165
BaeGI	GKGCMC	1 cut(s)	572
BalI	TGGCCA	2 cut(s)	1220, 1276
BamHI	GGATCC	1 cut(s)	364
BanI	GGYRCC	1 cut(s)	1100
BanII	GRGCYC	1 cut(s)	1694
BbsI	GAAGAC	2 cut(s)	274, 1799
Bbv12I	GWGCWC	4 cut(s)	1008, 1395, 1694, 1740
BbvCI	CCTCAGC	1 cut(s)	429
BbvI	GCAGC	1 cut(s)	847
BccI	CCATC	8 cut(s)	56, 137, 618, 695, 888, 1601, 1640, 1895
BcgI	CGANNNNNNTGC	2 cut(s)	821, 855
BciT130I	CCWGG	1 cut(s)	356
BclI	TGATCA	1 cut(s)	1663
BcnI	CCSGG	1 cut(s)	853
BcoDI	GTCTC	6 cut(s)	1395, 1436, 1446, 1611, 1650, 1806
BfaI	CTAG	4 cut(s)	795, 933, 1326, 2005
BfmI	CTRYAG	1 cut(s)	1695
BfoI	RGCGCY	1 cut(s)	709
BisI	GCNGC	2 cut(s)	861, 1747
BlsI	GCNGC	2 cut(s)	862, 1748
BmcAI	AGTACT	1 cut(s)	1493
Bme1390I	CCNGG	2 cut(s)	356, 853
Bme18I	GGWCC	2 cut(s)	352, 1165
BmgT120I	GGNCC	3 cut(s)	352, 812, 1165
BmiI	GGNNCC	4 cut(s)	366, 927, 1102, 1166
BmrFI	CCNGG	2 cut(s)	356, 853
BmsI	GCATC	5 cut(s)	202, 514, 823, 1549, 1628
BmtI	GCTAGC	1 cut(s)	936
BpiI	GAAGAC	2 cut(s)	274, 1799
Bpu10I	CCTNAGC	1 cut(s)	429
BpuEI	CTTGAG	2 cut(s)	211, 1196
BpuMI	CCSGG	1 cut(s)	853
BsaBI	GATNNNNATC	1 cut(s)	1631
BsaI	GGTCTC	1 cut(s)	1806
BsaJI	CCNNGG	5 cut(s)	28, 572, 653, 824, 852
BsaXI	ACNNNNNCTCC	2 cut(s)	1443, 1473
Bsc4I	CCNNNNNNNGG	4 cut(s)	361, 984, 1027, 1481
Bse1I	ACTGG	1 cut(s)	1499
Bse3DI	GCAATG	3 cut(s)	220, 757, 783
Bse8I	GATNNNNATC	1 cut(s)	1631
BseBI	CCWGG	1 cut(s)	356
BseDI	CCNNGG	5 cut(s)	28, 572, 653, 824, 852
BseGI	GGATG	7 cut(s)	286, 469, 874, 1612, 1643, 1692, 1906
BseJI	GATNNNNATC	1 cut(s)	1631
BseLI	CCNNNNNNNGG	4 cut(s)	361, 984, 1027, 1481
BseMI	GCAATG	3 cut(s)	220, 757, 783
BseMII	CTCAG	5 cut(s)	237, 420, 1021, 1281, 1400
BseNI	ACTGG	1 cut(s)	1499
BseRI	GAGGAG	3 cut(s)	408, 1464, 1928
BseSI	GKGCMC	1 cut(s)	572
BseXI	GCAGC	1 cut(s)	847
BseYI	CCCAGC	1 cut(s)	788
BsgI	GTGCAG	1 cut(s)	324
Bsh1236I	CGCG	2 cut(s)	174, 1749
Bsh1285I	CGRYCG	1 cut(s)	178
BshFI	GGCC	4 cut(s)	814, 1220, 1276, 1746
BshNI	GGYRCC	1 cut(s)	1100
BsiEI	CGRYCG	1 cut(s)	178
BsiHKAI	GWGCWC	4 cut(s)	1008, 1395, 1694, 1740
BsiSI	CCGG	1 cut(s)	852
BslFI	GGGAC	4 cut(s)	1178, 1396, 1445, 1715
BslI	CCNNNNNNNGG	4 cut(s)	361, 984, 1027, 1481
BsmAI	GTCTC	6 cut(s)	1395, 1436, 1446, 1611, 1650, 1806
BsmBI	CGTCTC	1 cut(s)	1650
BsmFI	GGGAC	4 cut(s)	1178, 1396, 1445, 1715
BsmI	GAATGC	3 cut(s)	1068, 1504, 1790
BsnI	GGCC	4 cut(s)	814, 1220, 1276, 1746
Bso31I	GGTCTC	1 cut(s)	1806
Bsp1286I	GDGCHC	5 cut(s)	572, 1008, 1395, 1694, 1740
Bsp1407I	TGTACA	1 cut(s)	1254
Bsp143I	GATC	9 cut(s)	182, 364, 691, 910, 1010, 1577, 1598, 1663, 1973
Bsp19I	CCATGG	2 cut(s)	28, 824
BspACI	CCGC	5 cut(s)	178, 443, 1243, 1747, 1836
BspANI	GGCC	4 cut(s)	814, 1220, 1276, 1746
BspCNI	CTCAG	5 cut(s)	238, 421, 1020, 1282, 1399
BspFNI	CGCG	2 cut(s)	174, 1749
BspHI	TCATGA	3 cut(s)	1072, 1545, 1666
BspLI	GGNNCC	4 cut(s)	366, 927, 1102, 1166
BspOI	GCTAGC	1 cut(s)	936
BspPI	GGATC	6 cut(s)	177, 359, 372, 699, 905, 1585
BspT107I	GGYRCC	1 cut(s)	1100
BspTNI	GGTCTC	1 cut(s)	1806
BsrBI	CCGCTC	1 cut(s)	1243
BsrDI	GCAATG	3 cut(s)	220, 757, 783
BsrGI	TGTACA	1 cut(s)	1254
BsrI	ACTGG	1 cut(s)	1499
BssECI	CCNNGG	5 cut(s)	28, 572, 653, 824, 852
BssMI	GATC	9 cut(s)	182, 364, 691, 910, 1010, 1577, 1598, 1663, 1973
BssNAI	GTATAC	1 cut(s)	286
BssT1I	CCWWGG	4 cut(s)	28, 572, 653, 824
Bst1107I	GTATAC	1 cut(s)	286
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	5 cut(s)	584, 628, 1057, 1491, 1798
Bst6I	CTCTTC	1 cut(s)	1749
BstAPI	GCANNNNNTGC	1 cut(s)	567
BstAUI	TGTACA	1 cut(s)	1254
BstC8I	GCNNGC	3 cut(s)	117, 328, 934
BstDEI	CTNAG	6 cut(s)	246, 429, 1007, 1290, 1386, 1780
BstDSI	CCRYGG	2 cut(s)	28, 824
BstENI	CCTNNNNNAGG	1 cut(s)	982
BstF5I	GGATG	7 cut(s)	286, 469, 874, 1612, 1643, 1692, 1906
BstFNI	CGCG	2 cut(s)	174, 1749
BstH2I	RGCGCY	1 cut(s)	709
BstHHI	GCGC	2 cut(s)	708, 1751
BstKTI	GATC	9 cut(s)	185, 367, 694, 913, 1013, 1580, 1601, 1666, 1976
BstMAI	GTCTC	6 cut(s)	1395, 1436, 1446, 1611, 1650, 1806
BstMBI	GATC	9 cut(s)	182, 364, 691, 910, 1010, 1577, 1598, 1663, 1973
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	2 cut(s)	567, 1785
BstNI	CCWGG	1 cut(s)	356
BstNSI	RCATGY	1 cut(s)	389
BstSCI	CCNGG	2 cut(s)	354, 851
BstSFI	CTRYAG	1 cut(s)	1695
BstSLI	GKGCMC	1 cut(s)	572
BstUI	CGCG	2 cut(s)	174, 1749
BstV1I	GCAGC	1 cut(s)	847
BstV2I	GAAGAC	2 cut(s)	274, 1799
BstX2I	RGATCY	4 cut(s)	182, 364, 691, 1577
BstXI	CCANNNNNNTGG	1 cut(s)	1175
BstYI	RGATCY	4 cut(s)	182, 364, 691, 1577
BstZ17I	GTATAC	1 cut(s)	286
BsuRI	GGCC	4 cut(s)	814, 1220, 1276, 1746
BtgI	CCRYGG	2 cut(s)	28, 824
BtsCI	GGATG	7 cut(s)	286, 469, 874, 1612, 1643, 1692, 1906
Cac8I	GCNNGC	3 cut(s)	117, 328, 934
CciI	TCATGA	3 cut(s)	1072, 1545, 1666
CfoI	GCGC	2 cut(s)	708, 1751
Cfr13I	GGNCC	3 cut(s)	352, 812, 1165
Csp6I	GTAC	5 cut(s)	14, 1255, 1492, 1732, 1762
CviQI	GTAC	5 cut(s)	14, 1255, 1492, 1732, 1762
DdeI	CTNAG	6 cut(s)	246, 429, 1007, 1290, 1386, 1780
DpnI	GATC	9 cut(s)	184, 366, 693, 912, 1012, 1579, 1600, 1665, 1975
DpnII	GATC	9 cut(s)	182, 364, 691, 910, 1010, 1577, 1598, 1663, 1973
DraIII	CACNNNGTG	1 cut(s)	1873
EaeI	YGGCCR	2 cut(s)	1218, 1274
Eam1104I	CTCTTC	1 cut(s)	1749
EarI	CTCTTC	1 cut(s)	1749
Ecl136II	GAGCTC	1 cut(s)	1692
Eco130I	CCWWGG	4 cut(s)	28, 572, 653, 824
Eco24I	GRGCYC	1 cut(s)	1694
Eco31I	GGTCTC	1 cut(s)	1806
Eco47I	GGWCC	2 cut(s)	352, 1165
Eco53kI	GAGCTC	1 cut(s)	1692
Eco57I	CTGAAG	1 cut(s)	1773
EcoICRI	GAGCTC	1 cut(s)	1692
EcoNI	CCTNNNNNAGG	1 cut(s)	982
EcoRII	CCWGG	1 cut(s)	354
EcoT14I	CCWWGG	4 cut(s)	28, 572, 653, 824
EcoT22I	ATGCAT	2 cut(s)	529, 1564
EcoT38I	GRGCYC	1 cut(s)	1694
ErhI	CCWWGG	4 cut(s)	28, 572, 653, 824
Esp3I	CGTCTC	1 cut(s)	1650
FaqI	GGGAC	4 cut(s)	1178, 1396, 1445, 1715
FbaI	TGATCA	1 cut(s)	1663
FblI	GTMKAC	4 cut(s)	285, 630, 1285, 1851
Fnu4HI	GCNGC	2 cut(s)	861, 1747
FokI	GGATG	7 cut(s)	293, 476, 881, 1619, 1650, 1699, 1913
FriOI	GRGCYC	1 cut(s)	1694
Fsp4HI	GCNGC	2 cut(s)	861, 1747
FspBI	CTAG	4 cut(s)	795, 933, 1326, 2005
GlaI	GCGC	2 cut(s)	707, 1750
GluI	GCNGC	2 cut(s)	861, 1747
GsaI	CCCAGC	1 cut(s)	792
HaeII	RGCGCY	1 cut(s)	709
HaeIII	GGCC	4 cut(s)	814, 1220, 1276, 1746
HapII	CCGG	1 cut(s)	852
HhaI	GCGC	2 cut(s)	708, 1751
Hin6I	GCGC	2 cut(s)	706, 1749
HinP1I	GCGC	2 cut(s)	706, 1749
HincII	GTYRAC	1 cut(s)	1852
HindII	GTYRAC	1 cut(s)	1852
HindIII	AAGCTT	3 cut(s)	401, 946, 1777
HinfI	GANTC	5 cut(s)	752, 952, 1192, 1298, 1384
HpaII	CCGG	1 cut(s)	852
HphI	GGTGA	6 cut(s)	209, 419, 457, 599, 1850, 1859
Hpy188I	TCNGA	7 cut(s)	615, 982, 1010, 1046, 1637, 1655, 1811
Hpy188III	TCNNGA	9 cut(s)	133, 209, 490, 1073, 1307, 1388, 1546, 1667, 1943
HpyAV	CCTTC	8 cut(s)	97, 249, 428, 491, 924, 1274, 1853, 1919
HpyCH4III	ACNGT	5 cut(s)	584, 628, 1057, 1491, 1798
HpyCH4IV	ACGT	1 cut(s)	1023
HpyF10VI	GCNNNNNNNGC	2 cut(s)	567, 1785
HpyF3I	CTNAG	6 cut(s)	246, 429, 1007, 1290, 1386, 1780
HpySE526I	ACGT	1 cut(s)	1023
HspAI	GCGC	2 cut(s)	706, 1749
Ksp22I	TGATCA	1 cut(s)	1663
Kzo9I	GATC	9 cut(s)	182, 364, 691, 910, 1010, 1577, 1598, 1663, 1973
LmnI	GCTCC	5 cut(s)	1060, 1240, 1390, 1709, 1915
Lsp1109I	GCAGC	1 cut(s)	847
LweI	GCATC	5 cut(s)	202, 514, 823, 1549, 1628
MaeI	CTAG	4 cut(s)	795, 933, 1326, 2005
MaeII	ACGT	1 cut(s)	1023
MaeIII	GTNAC	4 cut(s)	124, 1802, 1873, 1891
MalI	GATC	9 cut(s)	184, 366, 693, 912, 1012, 1579, 1600, 1665, 1975
MbiI	CCGCTC	1 cut(s)	1243
MboI	GATC	9 cut(s)	182, 364, 691, 910, 1010, 1577, 1598, 1663, 1973
MboII	GAAGA	7 cut(s)	43, 279, 533, 592, 1766, 1804, 1853
MfeI	CAATTG	5 cut(s)	91, 294, 1014, 1037, 1197
MflI	RGATCY	4 cut(s)	182, 364, 691, 1577
MhlI	GDGCHC	5 cut(s)	572, 1008, 1395, 1694, 1740
MlsI	TGGCCA	2 cut(s)	1220, 1276
MluNI	TGGCCA	2 cut(s)	1220, 1276
MlyI	GAGTC	1 cut(s)	1378
MmeI	TCCRAC	1 cut(s)	971
Mox20I	TGGCCA	2 cut(s)	1220, 1276
Mph1103I	ATGCAT	2 cut(s)	529, 1564
MroXI	GAANNNNTTC	2 cut(s)	1302, 1863
MscI	TGGCCA	2 cut(s)	1220, 1276
MseI	TTAA	3 cut(s)	339, 941, 1962
MslI	CAYNNNNRTG	2 cut(s)	762, 1550
Msp20I	TGGCCA	2 cut(s)	1220, 1276
MspA1I	CMGCKG	1 cut(s)	1836
MspI	CCGG	1 cut(s)	852
MspR9I	CCNGG	2 cut(s)	356, 853
MunI	CAATTG	5 cut(s)	91, 294, 1014, 1037, 1197
Mva1269I	GAATGC	3 cut(s)	1068, 1504, 1790
MvaI	CCWGG	1 cut(s)	356
MvnI	CGCG	2 cut(s)	174, 1749
MwoI	GCNNNNNNNGC	2 cut(s)	567, 1785
NciI	CCSGG	1 cut(s)	853
NcoI	CCATGG	2 cut(s)	28, 824
NdeII	GATC	9 cut(s)	182, 364, 691, 910, 1010, 1577, 1598, 1663, 1973
NheI	GCTAGC	1 cut(s)	932
NlaIV	GGNNCC	4 cut(s)	366, 927, 1102, 1166
NmuCI	GTSAC	2 cut(s)	124, 1873
NsiI	ATGCAT	2 cut(s)	529, 1564
NspI	RCATGY	1 cut(s)	389
PagI	TCATGA	3 cut(s)	1072, 1545, 1666
PcsI	WCGNNNNNNNCGW	1 cut(s)	1770
PctI	GAATGC	3 cut(s)	1068, 1504, 1790
PdmI	GAANNNNTTC	2 cut(s)	1302, 1863
PfeI	GAWTC	4 cut(s)	752, 952, 1192, 1298
PflFI	GACNNNGTC	1 cut(s)	1457
PkrI	GCNGC	2 cut(s)	862, 1748
PleI	GAGTC	1 cut(s)	1378
PpsI	GAGTC	1 cut(s)	1378
Psp124BI	GAGCTC	1 cut(s)	1694
Psp6I	CCWGG	1 cut(s)	354
PspFI	CCCAGC	1 cut(s)	788
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	4 cut(s)	366, 927, 1102, 1166
PspPI	GGNCC	3 cut(s)	352, 812, 1165
PsuI	RGATCY	4 cut(s)	182, 364, 691, 1577
PsyI	GACNNNGTC	1 cut(s)	1457
RsaI	GTAC	5 cut(s)	15, 1256, 1493, 1733, 1763
RsaNI	GTAC	5 cut(s)	14, 1255, 1492, 1732, 1762
RseI	CAYNNNNRTG	2 cut(s)	762, 1550
SacI	GAGCTC	1 cut(s)	1694
SalI	GTCGAC	1 cut(s)	1850
SaqAI	TTAA	3 cut(s)	339, 941, 1962
SatI	GCNGC	2 cut(s)	861, 1747
Sau3AI	GATC	9 cut(s)	182, 364, 691, 910, 1010, 1577, 1598, 1663, 1973
Sau96I	GGNCC	3 cut(s)	352, 812, 1165
ScaI	AGTACT	1 cut(s)	1493
SchI	GAGTC	1 cut(s)	1378
ScrFI	CCNGG	2 cut(s)	356, 853
SduI	GDGCHC	5 cut(s)	572, 1008, 1395, 1694, 1740
SfaNI	GCATC	5 cut(s)	202, 514, 823, 1549, 1628
SfcI	CTRYAG	1 cut(s)	1695
SinI	GGWCC	2 cut(s)	352, 1165
SmiMI	CAYNNNNRTG	2 cut(s)	762, 1550
SmlI	CTYRAG	2 cut(s)	226, 1211
SmoI	CTYRAG	2 cut(s)	226, 1211
SsiI	CCGC	5 cut(s)	178, 443, 1243, 1747, 1836
SspI	AATATT	2 cut(s)	1133, 1995
SspMI	CTAG	4 cut(s)	795, 933, 1326, 2005
SstI	GAGCTC	1 cut(s)	1694
StyD4I	CCNGG	2 cut(s)	354, 851
StyI	CCWWGG	4 cut(s)	28, 572, 653, 824
TaaI	ACNGT	5 cut(s)	584, 628, 1057, 1491, 1798
TaiI	ACGT	1 cut(s)	1026
TaqI	TCGA	2 cut(s)	885, 1851
TatI	WGTACW	3 cut(s)	13, 1254, 1491
TauI	GCSGC	1 cut(s)	1749
TfiI	GAWTC	4 cut(s)	752, 952, 1192, 1298
Tru1I	TTAA	3 cut(s)	339, 941, 1962
Tru9I	TTAA	3 cut(s)	339, 941, 1962
TseFI	GTSAC	2 cut(s)	124, 1873
TseI	GCWGC	1 cut(s)	860
Tsp45I	GTSAC	2 cut(s)	124, 1873
Tth111I	GACNNNGTC	1 cut(s)	1457
VpaK11BI	GGWCC	2 cut(s)	352, 1165
XagI	CCTNNNNNAGG	1 cut(s)	982
XapI	RAATTY	1 cut(s)	880
XceI	RCATGY	1 cut(s)	389
XcmI	CCANNNNNNNNNTGG	2 cut(s)	270, 822
XmiI	GTMKAC	4 cut(s)	285, 630, 1285, 1851
XmnI	GAANNNNTTC	2 cut(s)	1302, 1863
XspI	CTAG	4 cut(s)	795, 933, 1326, 2005
ZrmI	AGTACT	1 cut(s)	1493
Zsp2I	ATGCAT	2 cut(s)	529, 1564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.