Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009530

Physical Location & Seq

Genomic Coordinates Reverse (-)

47870198 .. 47870674

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0375700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGAGGAAAGGTTGAAGGTGCAGATGGAGAAATCTCGTCGTTTCAGTGTCCATTATTCTAGTCCTGGAGTTTATGAGGTTCGATCTGACTTTTCTTATGTAGTTAACATTTCCGAGCATTCATGTTCATGTGTGAAATGGCAGATCAATTGTTTTCCTTGTCCTCACTGCCTTGCTGCAATACAAGCTGCCTCTGAAAATGTCTATGATTATATTGATAAGTACTTTTGTGTTGCTATGTTCAAGAAGAGCTACAGTTTTCCTATCCGGCTGATAACCAATGTTGATATGTCTTCTTTTGAATCTGCTACTGACTGTATATTAGCTCCCCTTGCGAAGAGGCCACCTGGGAGGCCTAGGGTGAAGTGGTTCAAGTCTGTTGGAGAGGTTGAAAAGAAGCAGATCATGTGCGGCCGTTGTGGCAAAATGGGCACTCATAACAAGTTGAGCTGCACTGAACCTCTCGTTCAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0006808 GO:0006950 GO:0006970 GO:0006995 GO:0007154 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0009056 GO:0009267 GO:0009395 GO:0009605 GO:0009628 GO:0009791 GO:0009825 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016042 GO:0016049 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0022622 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0040007 GO:0042578 GO:0042594 GO:0043562 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044464 GO:0045848 GO:0046434 GO:0048364 GO:0048518 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051301 GO:0051365 GO:0051716 GO:0065007 GO:0071496 GO:0071704 GO:0071944 GO:0099402 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

158

Amino Acids

18.11

Weight (kDa)

8.91

Isoelectric Point (pI)

56.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIM	PF04434	33 - 64	7.1e-06	SWIM zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55180 AT1G55180
fragaria_vesca	FvH4_6g33140
malus_domestica	MD09G1194700.v1.1 MD17G1175200.v1.1
prunus_persica	Prupe.3G051200_v2.0.a1
pyrus_communis	pycom09g11160
rosa_chinensis	RchiOBHm_Chr2g0142831
rosa_laevigata	RLG00000019989
rosa_multiflora	Rmu_co8241083.1_g000001 Rmu_co8446503.1_g000001 Rmu_sc0012306.1_g000009 Rmu_sc0013116.1_g000004
rosa_roxburghii	Rroxscaffold_2G00102280 Rroxscaffold_2G00103320
rosa_rugosa	Rorug02G0375600 Rorug02G0375700
rosa_samantha	Rh2AG428800 Rh2BG438100 Rh2CG414300 Rh2DG447900
rosa_wichuraiana	Rw2G035060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	411
AcoI	YGGCCR	1 cut(s)	412
AfaI	GTAC	1 cut(s)	224
AgsI	TTSAA	5 cut(s)	16, 244, 302, 373, 392
AjnI	CCWGG	2 cut(s)	64, 346
AluBI	AGCT	4 cut(s)	188, 252, 326, 450
AluI	AGCT	4 cut(s)	188, 252, 326, 450
AoxI	GGCC	3 cut(s)	341, 353, 412
ApeKI	GCWGC	3 cut(s)	176, 188, 450
Asp700I	GAANNNNTTC	1 cut(s)	368
AspA2I	CCTAGG	1 cut(s)	356
AsuHPI	GGTGA	1 cut(s)	373
AvrII	CCTAGG	1 cut(s)	356
BaeGI	GKGCMC	1 cut(s)	434
BbsI	GAAGAC	1 cut(s)	285
BbvI	GCAGC	3 cut(s)	163, 175, 437
BccI	CCATC	1 cut(s)	19
BceAI	ACGGC	1 cut(s)	399
BciT130I	CCWGG	2 cut(s)	66, 348
BfaI	CTAG	2 cut(s)	60, 357
BfmI	CTRYAG	1 cut(s)	253
BglI	GCCNNNNNGGC	1 cut(s)	420
BisI	GCNGC	4 cut(s)	177, 189, 412, 451
BlnI	CCTAGG	1 cut(s)	356
BlsI	GCNGC	4 cut(s)	178, 190, 413, 452
BmcAI	AGTACT	1 cut(s)	224
Bme1390I	CCNGG	2 cut(s)	66, 348
BmrFI	CCNGG	2 cut(s)	66, 348
BpiI	GAAGAC	1 cut(s)	285
BpmI	CTGGAG	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	347, 356
BsaXI	ACNNNNNCTCC	1 cut(s)	26
BseBI	CCWGG	2 cut(s)	66, 348
BseDI	CCNNGG	2 cut(s)	347, 356
BseSI	GKGCMC	1 cut(s)	434
BseX3I	CGGCCG	1 cut(s)	412
BseXI	GCAGC	3 cut(s)	163, 175, 437
BsgI	GTGCAG	2 cut(s)	41, 436
Bsh1285I	CGRYCG	1 cut(s)	415
BshFI	GGCC	3 cut(s)	343, 355, 414
BsiEI	CGRYCG	1 cut(s)	415
BsiSI	CCGG	1 cut(s)	268
BsmI	GAATGC	1 cut(s)	118
BsnI	GGCC	3 cut(s)	343, 355, 414
Bsp1286I	GDGCHC	1 cut(s)	434
Bsp143I	GATC	3 cut(s)	83, 144, 402
BspACI	CCGC	1 cut(s)	411
BspANI	GGCC	3 cut(s)	343, 355, 414
BspQI	GCTCTTC	1 cut(s)	242
BssECI	CCNNGG	2 cut(s)	347, 356
BssMI	GATC	3 cut(s)	83, 144, 402
BssT1I	CCWWGG	1 cut(s)	356
Bst2UI	CCWGG	2 cut(s)	66, 348
Bst4CI	ACNGT	2 cut(s)	257, 317
Bst6I	CTCTTC	2 cut(s)	242, 332
BstKTI	GATC	3 cut(s)	86, 147, 405
BstMBI	GATC	3 cut(s)	83, 144, 402
BstMCI	CGRYCG	1 cut(s)	415
BstMWI	GCNNNNNNNGC	4 cut(s)	185, 332, 420, 429
BstNI	CCWGG	2 cut(s)	66, 348
BstSCI	CCNGG	2 cut(s)	64, 346
BstSFI	CTRYAG	1 cut(s)	253
BstSLI	GKGCMC	1 cut(s)	434
BstV1I	GCAGC	3 cut(s)	163, 175, 437
BstV2I	GAAGAC	1 cut(s)	285
BstZI	CGGCCG	1 cut(s)	412
BsuRI	GGCC	3 cut(s)	343, 355, 414
BtsI	GCAGTG	1 cut(s)	166
BtsIMutI	CAGTG	3 cut(s)	52, 166, 453
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	3 cut(s)	123, 129, 406
CviJI	RGCY	8 cut(s)	188, 252, 271, 326, 343, 355, 414, 450
CviKI_1	RGCY	8 cut(s)	188, 252, 271, 326, 343, 355, 414, 450
CviQI	GTAC	1 cut(s)	223
DpnI	GATC	3 cut(s)	85, 146, 404
DpnII	GATC	3 cut(s)	83, 144, 402
EaeI	YGGCCR	1 cut(s)	412
EagI	CGGCCG	1 cut(s)	412
Eam1104I	CTCTTC	2 cut(s)	242, 332
EarI	CTCTTC	2 cut(s)	242, 332
EclXI	CGGCCG	1 cut(s)	412
Eco130I	CCWWGG	1 cut(s)	356
Eco147I	AGGCCT	1 cut(s)	355
Eco52I	CGGCCG	1 cut(s)	412
EcoRII	CCWGG	2 cut(s)	64, 346
EcoT14I	CCWWGG	1 cut(s)	356
ErhI	CCWWGG	1 cut(s)	356
FaeI	CATG	3 cut(s)	126, 132, 409
FatI	CATG	3 cut(s)	122, 128, 405
Fnu4HI	GCNGC	4 cut(s)	177, 189, 412, 451
Fsp4HI	GCNGC	4 cut(s)	177, 189, 412, 451
FspBI	CTAG	2 cut(s)	60, 357
GluI	GCNGC	4 cut(s)	177, 189, 412, 451
GsuI	CTGGAG	1 cut(s)	87
HaeIII	GGCC	3 cut(s)	343, 355, 414
HapII	CCGG	1 cut(s)	268
Hin1II	CATG	3 cut(s)	126, 132, 409
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	1 cut(s)	302
HpaI	GTTAAC	1 cut(s)	106
HpaII	CCGG	1 cut(s)	268
HphI	GGTGA	1 cut(s)	373
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	3 cut(s)	88, 115, 196
Hpy188III	TCNNGA	1 cut(s)	244
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	1 cut(s)	42
HpyAV	CCTTC	1 cut(s)	10
HpyCH4III	ACNGT	2 cut(s)	257, 317
HpyCH4V	TGCA	3 cut(s)	22, 179, 453
HpyF10VI	GCNNNNNNNGC	4 cut(s)	185, 332, 420, 429
Hsp92II	CATG	3 cut(s)	126, 132, 409
KspAI	GTTAAC	1 cut(s)	106
Kzo9I	GATC	3 cut(s)	83, 144, 402
LguI	GCTCTTC	1 cut(s)	242
LmnI	GCTCC	1 cut(s)	331
LpnPI	CCDG	5 cut(s)	51, 78, 281, 333, 360
Lsp1109I	GCAGC	3 cut(s)	163, 175, 437
MaeI	CTAG	2 cut(s)	60, 357
MalI	GATC	3 cut(s)	85, 146, 404
MboI	GATC	3 cut(s)	83, 144, 402
MboII	GAAGA	3 cut(s)	259, 285, 349
MfeI	CAATTG	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	434
MluCI	AATT	1 cut(s)	148
MmeI	TCCRAC	1 cut(s)	361
MnlI	CCTC	7 cut(s)	70, 174, 202, 333, 345, 379, 471
MroXI	GAANNNNTTC	1 cut(s)	368
MseI	TTAA	1 cut(s)	105
MslI	CAYNNNNRTG	1 cut(s)	127
MspI	CCGG	1 cut(s)	268
MspR9I	CCNGG	2 cut(s)	66, 348
MunI	CAATTG	1 cut(s)	148
Mva1269I	GAATGC	1 cut(s)	118
MvaI	CCWGG	2 cut(s)	66, 348
MwoI	GCNNNNNNNGC	4 cut(s)	185, 332, 420, 429
NdeII	GATC	3 cut(s)	83, 144, 402
NlaIII	CATG	3 cut(s)	126, 132, 409
PceI	AGGCCT	1 cut(s)	355
PciSI	GCTCTTC	1 cut(s)	242
PctI	GAATGC	1 cut(s)	118
PdmI	GAANNNNTTC	1 cut(s)	368
PfeI	GAWTC	1 cut(s)	302
PfoI	TCCNGGA	1 cut(s)	64
PkrI	GCNGC	4 cut(s)	178, 190, 413, 452
Psp6I	CCWGG	2 cut(s)	64, 346
PspGI	CCWGG	2 cut(s)	64, 346
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
RseI	CAYNNNNRTG	1 cut(s)	127
SapI	GCTCTTC	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	4 cut(s)	177, 189, 412, 451
Sau3AI	GATC	3 cut(s)	83, 144, 402
ScaI	AGTACT	1 cut(s)	224
ScrFI	CCNGG	2 cut(s)	66, 348
SduI	GDGCHC	1 cut(s)	434
SfcI	CTRYAG	1 cut(s)	253
SmiMI	CAYNNNNRTG	1 cut(s)	127
Sse9I	AATT	1 cut(s)	148
SseBI	AGGCCT	1 cut(s)	355
SsiI	CCGC	1 cut(s)	411
SspMI	CTAG	2 cut(s)	60, 357
StuI	AGGCCT	1 cut(s)	355
StyD4I	CCNGG	2 cut(s)	64, 346
StyI	CCWWGG	1 cut(s)	356
TaaI	ACNGT	2 cut(s)	257, 317
TaqI	TCGA	1 cut(s)	82
TasI	AATT	1 cut(s)	148
TatI	WGTACW	1 cut(s)	222
TauI	GCSGC	1 cut(s)	414
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	3 cut(s)	52, 173, 460
TseI	GCWGC	3 cut(s)	176, 188, 450
TspDTI	ATGAA	2 cut(s)	111, 117
TspRI	CASTG	3 cut(s)	52, 173, 460
XmaJI	CCTAGG	1 cut(s)	356
XmnI	GAANNNNTTC	1 cut(s)	368
XspI	CTAG	2 cut(s)	60, 357
ZrmI	AGTACT	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.