Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8258439.1

Orthogroup ID

OG0010574

Physical Location & Seq

Genomic Coordinates Forward (+)

185 .. 777

Gene Structure 593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8258439.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atgtctgctccattgacaccttctaagagaccgcaccaggaggaccctttggagccgaatgggaaagggaagttacaaaagtctgatgatgatcgacctactaatgcttcctctggcaatgctgtttttcgggtagtttgccccgagccgaaaattggttgtgttactggtgaaggtggctctggcatatccgagatatatcaggagactctggtgaaggtgagagttgaggaaagtgtacccggctgcgacgaaagagttattgtcattggttgggatggagagaatcgagttgatagagagcaaagcaaggagaatgggttggaagagactagtgtagttgaaaagaaggaagagaaggaagatgtttcgattgatgattcagaacgctgcgaaaaagtaagtcctgcatccgtcaagaaggctctgcaacttgtgtttgagagaatggttgaaggggaaagagagactgatggaggggatggagatgcaaatggcgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

167

Amino Acids

18.17

Weight (kDa)

4.59

Isoelectric Point (pI)

43.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010574)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g33520 FvH4_5g33520
malus_domestica	MD08G1211200.v1.1
prunus_persica	Prupe.1G543200_v2.0.a1 Prupe.1G543200_v2.0.a1 Prupe.1G543200_v2.0.a1
pyrus_communis	pycom08g18200 pycom15g35520
rosa_chinensis	RchiOBHm_Chr7g0232321
rosa_laevigata	RLG00000001357
rosa_multiflora	Rmu_co8258439.1_g000001 Rmu_sc0004136.1_g000004 Rmu_sc0034864.1_g000001
rosa_roxburghii	Rroxscaffold_3G00228470
rosa_rugosa	Rorug07G0272500 Rorug07G0272600
rosa_samantha	Rh7AG426500 Rh7BG400200 Rh7CG446200 Rh7DG417700
rosa_wichuraiana	Rw7G035360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	32
AcyI	GRCGYC	1 cut(s)	498
AfaI	GTAC	1 cut(s)	240
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	2 cut(s)	344, 455
AhlI	ACTAGT	1 cut(s)	332
AjnI	CCWGG	1 cut(s)	36
Alw26I	GTCTC	4 cut(s)	22, 200, 323, 461
Ama87I	CYCGRG	1 cut(s)	143
ApeKI	GCWGC	2 cut(s)	246, 390
AspS9I	GGNCC	1 cut(s)	43
AsuC2I	CCSGG	1 cut(s)	243
AsuHPI	GGTGA	3 cut(s)	182, 226, 232
AvaI	CYCGRG	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	43
BbvI	GCAGC	2 cut(s)	233, 377
BccI	CCATC	3 cut(s)	272, 467, 476
BciT130I	CCWGG	1 cut(s)	38
BcnI	CCSGG	1 cut(s)	243
BcoDI	GTCTC	4 cut(s)	22, 200, 323, 461
BcuI	ACTAGT	1 cut(s)	332
BfaI	CTAG	1 cut(s)	333
BisI	GCNGC	2 cut(s)	247, 391
BlsI	GCNGC	2 cut(s)	248, 392
Bme1390I	CCNGG	2 cut(s)	38, 243
Bme18I	GGWCC	1 cut(s)	43
BmeT110I	CYCGRG	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	43
BmiI	GGNNCC	2 cut(s)	45, 54
BmrFI	CCNGG	2 cut(s)	38, 243
BmsI	GCATC	2 cut(s)	419, 478
BpuMI	CCSGG	1 cut(s)	243
BsaBI	GATNNNNATC	1 cut(s)	90
BsaHI	GRCGYC	1 cut(s)	498
BsaI	GGTCTC	1 cut(s)	22
BsaXI	ACNNNNNCTCC	2 cut(s)	305, 335
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	172
Bse3DI	GCAATG	1 cut(s)	124
Bse8I	GATNNNNATC	1 cut(s)	90
BseBI	CCWGG	1 cut(s)	38
BseGI	GGATG	3 cut(s)	283, 410, 487
BseJI	GATNNNNATC	1 cut(s)	90
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMI	GCAATG	1 cut(s)	124
BseNI	ACTGG	1 cut(s)	172
BseXI	GCAGC	2 cut(s)	233, 377
BsiHKCI	CYCGRG	1 cut(s)	143
BsiSI	CCGG	1 cut(s)	243
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmAI	GTCTC	4 cut(s)	22, 200, 323, 461
Bso31I	GGTCTC	1 cut(s)	22
BsoBI	CYCGRG	1 cut(s)	143
Bsp143I	GATC	1 cut(s)	91
BspACI	CCGC	1 cut(s)	32
BspLI	GGNNCC	2 cut(s)	45, 54
BspTNI	GGTCTC	1 cut(s)	22
BsrDI	GCAATG	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	172
BssMI	GATC	1 cut(s)	91
BssNI	GRCGYC	1 cut(s)	498
Bst2UI	CCWGG	1 cut(s)	38
Bst6I	CTCTTC	2 cut(s)	321, 348
BstACI	GRCGYC	1 cut(s)	498
BstDEI	CTNAG	1 cut(s)	24
BstF5I	GGATG	3 cut(s)	283, 410, 487
BstKTI	GATC	1 cut(s)	94
BstMAI	GTCTC	4 cut(s)	22, 200, 323, 461
BstMBI	GATC	1 cut(s)	91
BstNI	CCWGG	1 cut(s)	38
BstSCI	CCNGG	2 cut(s)	36, 241
BstV1I	GCAGC	2 cut(s)	233, 377
BtsCI	GGATG	3 cut(s)	283, 410, 487
Cfr13I	GGNCC	1 cut(s)	43
CseI	GACGC	1 cut(s)	487
Csp6I	GTAC	1 cut(s)	239
CviJI	RGCY	5 cut(s)	55, 148, 180, 246, 425
CviKI_1	RGCY	5 cut(s)	55, 148, 180, 246, 425
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	1 cut(s)	24
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
Eam1104I	CTCTTC	2 cut(s)	321, 348
EarI	CTCTTC	2 cut(s)	321, 348
Eco31I	GGTCTC	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	43
Eco88I	CYCGRG	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	36
FaiI	YATR	2 cut(s)	188, 199
Fnu4HI	GCNGC	2 cut(s)	247, 391
FokI	GGATG	3 cut(s)	290, 397, 494
Fsp4HI	GCNGC	2 cut(s)	247, 391
FspBI	CTAG	1 cut(s)	333
GluI	GCNGC	2 cut(s)	247, 391
HapII	CCGG	1 cut(s)	243
HgaI	GACGC	1 cut(s)	487
Hin1I	GRCGYC	1 cut(s)	498
HinfI	GANTC	3 cut(s)	208, 286, 380
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	3 cut(s)	182, 226, 232
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188I	TCNGA	4 cut(s)	85, 193, 385, 503
Hpy188III	TCNNGA	2 cut(s)	203, 418
Hpy8I	GTNNAC	1 cut(s)	239
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	7 cut(s)	30, 167, 211, 343, 352, 415, 449
HpyCH4V	TGCA	3 cut(s)	410, 430, 491
HpyF3I	CTNAG	1 cut(s)	24
Hsp92I	GRCGYC	1 cut(s)	498
Kzo9I	GATC	1 cut(s)	91
LmnI	GCTCC	2 cut(s)	13, 52
LpnPI	CCDG	9 cut(s)	23, 50, 99, 153, 168, 188, 197, 256, 420
Lsp1109I	GCAGC	2 cut(s)	233, 377
LweI	GCATC	2 cut(s)	419, 478
MaeI	CTAG	1 cut(s)	333
MaeIII	GTNAC	2 cut(s)	72, 163
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MboII	GAAGA	3 cut(s)	338, 365, 374
MluCI	AATT	1 cut(s)	153
MlyI	GAGTC	1 cut(s)	202
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	4 cut(s)	34, 121, 223, 470
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	2 cut(s)	38, 243
MvaI	CCWGG	1 cut(s)	38
NciI	CCSGG	1 cut(s)	243
NdeII	GATC	1 cut(s)	91
NlaIV	GGNNCC	2 cut(s)	45, 54
PfeI	GAWTC	2 cut(s)	286, 380
PkrI	GCNGC	2 cut(s)	248, 392
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
PpuMI	RGGWCCY	1 cut(s)	43
Psp5II	RGGWCCY	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	2 cut(s)	45, 54
PspPI	GGNCC	1 cut(s)	43
PspPPI	RGGWCCY	1 cut(s)	43
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
SatI	GCNGC	2 cut(s)	247, 391
Sau3AI	GATC	1 cut(s)	91
Sau96I	GGNCC	1 cut(s)	43
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	2 cut(s)	38, 243
SetI	ASST	4 cut(s)	22, 100, 178, 222
SfaNI	GCATC	2 cut(s)	419, 478
SinI	GGWCC	1 cut(s)	43
SpeI	ACTAGT	1 cut(s)	332
Sse9I	AATT	1 cut(s)	153
SsiI	CCGC	1 cut(s)	32
SspMI	CTAG	1 cut(s)	333
StyD4I	CCNGG	2 cut(s)	36, 241
TaqI	TCGA	3 cut(s)	94, 289, 371
TasI	AATT	1 cut(s)	153
TfiI	GAWTC	2 cut(s)	286, 380
TseI	GCWGC	2 cut(s)	246, 390
TspGWI	ACGGA	1 cut(s)	403
VpaK11BI	GGWCC	1 cut(s)	43
XspI	CTAG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.