Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0010574

Physical Location & Seq

Genomic Coordinates Forward (+)

58775188 .. 58776622

Gene Structure 1435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG417700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGTCTGCTCCGTTGACACCTTCTAAGAGACCGCACCAGGAGGACCCTTTGGAGCCGAATGGGAAAGGGAAGTTACAAAAGTCTGATGATGATCGACCTACTAATGCTTCCTCTGGCAATGCTGTTTTTCGGGTAGTTTGCCCCGAGCCGAAAATTGGTTGTGTTACTGGTGAAGGTGGCTCTGGCATATCCGAGATATATCAGGAGACTCTGGTGAAGGTGAGAGTTGAGGAAAGTGTACCCGGCTGCGACGAAAGAGTTATTGTCATTGGTTGGGATGGAGAGAATCGAGTTGATAGAGAGCAAAGCAAGGAGAATGGGTTGGAAGAGACTAGTGTAGTTGAAAAGAAGGAAGAGAAGGAAGATGTTTCGATTGATGATTCAGAACGCCGCGAAAAAGTAAGTCCTGCATCCGTCAAGAAGGCTCTGCAACTTGTGTTTGAGAGAATGGTTGAAGGGGAAAGAGAGACTGATGGAGGGGATGGAGATGGTAAGAAGTCATTGACAATTGTTTTGAGGTTGCTAGTTCTGTCGAATCAAATAGGGTGCATTTTGGGAATAGGTGGTAGTGTGATCAAGCAAATGGCGTCTGAAAGTGGGGCACAAATTCGGATCCTTCCTAGAGATAAACTTCCATTGTGTGCACCAGCTTCCGATGAGTTAGTTCAGATTACTGGTGAAGTTGATGCGGTCAGGAAAGCTCTAGATTCCGTTACCCAGCAGCTTTTGGATAATCTGCCTCGTGCTAGTGCCTCTTCCCTTCTCAACTCCACAGGGCCGTCATCTCAACCTTCTCCAAGAGCAGAAGCAACTCCGCCACCAGAGCGGTCTCAAGGAACACCTTATAGTAATCAGGCTGCTGATATTCTGGATAACCATTCTGCTGCTCATCCACTGATCCCAAAGGTTCATAGTTCTGGCATCCCTGGTAGGATGAAGTCTTCACAGGAAGTCCTAACTTTTCGCTTATTGTGCCACGAAGAGAGAGTAGGAGGTGTAATTGGAAAGGGTGGAACGATTATAAGGACACTTAAGCAAGAAACAGGCTGTGAAATCAAGGTTATGGATGGTGTCTCCGATTCAGAGGACCGCGTTATTATTTTATCTGGTCCGGCGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

373

Amino Acids

39.97

Weight (kDa)

5.14

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	43 - 91	8.1e-08	KH domain
KH_1	PF00013	172 - 238	4.4e-13	KH domain
KH_1	PF00013	320 - 371	2.2e-12	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010574)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g33520 FvH4_5g33520
malus_domestica	MD08G1211200.v1.1
prunus_persica	Prupe.1G543200_v2.0.a1 Prupe.1G543200_v2.0.a1 Prupe.1G543200_v2.0.a1
pyrus_communis	pycom08g18200 pycom15g35520
rosa_chinensis	RchiOBHm_Chr7g0232321
rosa_laevigata	RLG00000001357
rosa_multiflora	Rmu_co8258439.1_g000001 Rmu_sc0004136.1_g000004 Rmu_sc0034864.1_g000001
rosa_roxburghii	Rroxscaffold_3G00228470
rosa_rugosa	Rorug07G0272500 Rorug07G0272600
rosa_samantha	Rh7AG426500 Rh7BG400200 Rh7CG446200 Rh7DG417700
rosa_wichuraiana	Rw7G035360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1022
AccBSI	CCGCTC	1 cut(s)	826
AccII	CGCG	2 cut(s)	393, 1092
AciI	CCGC	7 cut(s)	32, 391, 689, 815, 826, 1090, 1115
AclWI	GGATC	3 cut(s)	607, 620, 892
AcsI	RAATTY	1 cut(s)	606
AcyI	GRCGYC	1 cut(s)	587
AfaI	GTAC	1 cut(s)	240
AfiI	CCNNNNNNNGG	1 cut(s)	155
AflII	CTTAAG	1 cut(s)	1031
AgsI	TTSAA	2 cut(s)	344, 455
AhlI	ACTAGT	1 cut(s)	332
AjnI	CCWGG	2 cut(s)	36, 925
AluBI	AGCT	3 cut(s)	650, 701, 724
AluI	AGCT	3 cut(s)	650, 701, 724
Alw21I	GWGCWC	1 cut(s)	646
Alw26I	GTCTC	6 cut(s)	22, 200, 323, 461, 834, 1078
Alw44I	GTGCAC	1 cut(s)	642
AlwI	GGATC	3 cut(s)	607, 620, 892
Ama87I	CYCGRG	1 cut(s)	143
AoxI	GGCC	1 cut(s)	776
ApaLI	GTGCAC	1 cut(s)	642
ApeKI	GCWGC	4 cut(s)	246, 721, 857, 884
ApoI	RAATTY	1 cut(s)	606
ArsI	GACNNNNNNTTYG	2 cut(s)	496, 528
AspS9I	GGNCC	4 cut(s)	43, 776, 1087, 1109
AsuC2I	CCSGG	1 cut(s)	243
AsuHPI	GGTGA	4 cut(s)	182, 226, 232, 689
AvaI	CYCGRG	1 cut(s)	143
AvaII	GGWCC	3 cut(s)	43, 1087, 1109
BaeGI	GKGCMC	2 cut(s)	604, 646
BamHI	GGATCC	1 cut(s)	612
BauI	CACGAG	1 cut(s)	741
BbsI	GAAGAC	1 cut(s)	933
Bbv12I	GWGCWC	1 cut(s)	646
BbvI	GCAGC	4 cut(s)	233, 733, 844, 871
BccI	CCATC	5 cut(s)	272, 467, 476, 482, 1061
BceAI	ACGGC	1 cut(s)	763
BciT130I	CCWGG	2 cut(s)	38, 927
BclI	TGATCA	1 cut(s)	573
BcnI	CCSGG	1 cut(s)	243
BcoDI	GTCTC	6 cut(s)	22, 200, 323, 461, 834, 1078
BcuI	ACTAGT	1 cut(s)	332
BfaI	CTAG	5 cut(s)	333, 524, 621, 704, 747
BfrI	CTTAAG	1 cut(s)	1031
BisI	GCNGC	5 cut(s)	247, 391, 722, 858, 885
BlsI	GCNGC	5 cut(s)	248, 392, 723, 859, 886
Bme1390I	CCNGG	3 cut(s)	38, 243, 927
Bme18I	GGWCC	3 cut(s)	43, 1087, 1109
BmeT110I	CYCGRG	1 cut(s)	143
BmgT120I	GGNCC	4 cut(s)	43, 776, 1087, 1109
BmiI	GGNNCC	3 cut(s)	45, 54, 614
BmrFI	CCNGG	3 cut(s)	38, 243, 927
BmsI	GCATC	3 cut(s)	419, 676, 930
BpiI	GAAGAC	1 cut(s)	933
BpuEI	CTTGAG	1 cut(s)	816
BpuMI	CCSGG	1 cut(s)	243
BsaBI	GATNNNNATC	1 cut(s)	90
BsaHI	GRCGYC	1 cut(s)	587
BsaI	GGTCTC	2 cut(s)	22, 834
BsaJI	CCNNGG	1 cut(s)	925
BsaXI	ACNNNNNCTCC	2 cut(s)	305, 335
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse1I	ACTGG	2 cut(s)	172, 679
Bse3DI	GCAATG	1 cut(s)	124
Bse8I	GATNNNNATC	1 cut(s)	90
BseBI	CCWGG	2 cut(s)	38, 927
BseDI	CCNNGG	1 cut(s)	925
BseGI	GGATG	7 cut(s)	283, 410, 487, 889, 921, 939, 1072
BseJI	GATNNNNATC	1 cut(s)	90
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMI	GCAATG	1 cut(s)	124
BseNI	ACTGG	2 cut(s)	172, 679
BseSI	GKGCMC	2 cut(s)	604, 646
BseXI	GCAGC	4 cut(s)	233, 733, 844, 871
BseYI	CCCAGC	1 cut(s)	717
Bsh1236I	CGCG	2 cut(s)	393, 1092
BshFI	GGCC	1 cut(s)	778
BsiHKAI	GWGCWC	1 cut(s)	646
BsiHKCI	CYCGRG	1 cut(s)	143
BsiSI	CCGG	2 cut(s)	243, 1112
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmAI	GTCTC	6 cut(s)	22, 200, 323, 461, 834, 1078
BsnI	GGCC	1 cut(s)	778
Bso31I	GGTCTC	2 cut(s)	22, 834
BsoBI	CYCGRG	1 cut(s)	143
Bsp1286I	GDGCHC	2 cut(s)	604, 646
Bsp143I	GATC	4 cut(s)	91, 573, 612, 897
BspACI	CCGC	7 cut(s)	32, 391, 689, 815, 826, 1090, 1115
BspANI	GGCC	1 cut(s)	778
BspFNI	CGCG	2 cut(s)	393, 1092
BspLI	GGNNCC	3 cut(s)	45, 54, 614
BspPI	GGATC	3 cut(s)	607, 620, 892
BspTI	CTTAAG	1 cut(s)	1031
BspTNI	GGTCTC	2 cut(s)	22, 834
BsrBI	CCGCTC	1 cut(s)	826
BsrDI	GCAATG	1 cut(s)	124
BsrI	ACTGG	2 cut(s)	172, 679
BssECI	CCNNGG	1 cut(s)	925
BssMI	GATC	4 cut(s)	91, 573, 612, 897
BssNI	GRCGYC	1 cut(s)	587
BssSI	CACGAG	1 cut(s)	741
Bst2BI	CACGAG	1 cut(s)	741
Bst2UI	CCWGG	2 cut(s)	38, 927
Bst6I	CTCTTC	4 cut(s)	321, 348, 760, 975
BstACI	GRCGYC	1 cut(s)	587
BstAFI	CTTAAG	1 cut(s)	1031
BstDEI	CTNAG	1 cut(s)	24
BstF5I	GGATG	7 cut(s)	283, 410, 487, 889, 921, 939, 1072
BstFNI	CGCG	2 cut(s)	393, 1092
BstKTI	GATC	4 cut(s)	94, 576, 615, 900
BstMAI	GTCTC	6 cut(s)	22, 200, 323, 461, 834, 1078
BstMBI	GATC	4 cut(s)	91, 573, 612, 897
BstMWI	GCNNNNNNNGC	2 cut(s)	823, 972
BstNI	CCWGG	2 cut(s)	38, 927
BstSCI	CCNGG	3 cut(s)	36, 241, 925
BstSLI	GKGCMC	2 cut(s)	604, 646
BstUI	CGCG	2 cut(s)	393, 1092
BstV1I	GCAGC	4 cut(s)	233, 733, 844, 871
BstV2I	GAAGAC	1 cut(s)	933
BstX2I	RGATCY	1 cut(s)	612
BstYI	RGATCY	1 cut(s)	612
BsuRI	GGCC	1 cut(s)	778
BtsCI	GGATG	7 cut(s)	283, 410, 487, 889, 921, 939, 1072
BtsIMutI	CAGTG	1 cut(s)	893
Cfr13I	GGNCC	4 cut(s)	43, 776, 1087, 1109
CseI	GACGC	1 cut(s)	576
Csp6I	GTAC	1 cut(s)	239
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	1 cut(s)	24
DpnI	GATC	4 cut(s)	93, 575, 614, 899
DpnII	GATC	4 cut(s)	91, 573, 612, 897
Eam1104I	CTCTTC	4 cut(s)	321, 348, 760, 975
EarI	CTCTTC	4 cut(s)	321, 348, 760, 975
EciI	GGCGGA	1 cut(s)	804
Eco31I	GGTCTC	2 cut(s)	22, 834
Eco47I	GGWCC	3 cut(s)	43, 1087, 1109
Eco88I	CYCGRG	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	43
EcoRII	CCWGG	2 cut(s)	36, 925
FaiI	YATR	7 cut(s)	188, 199, 846, 912, 1022, 1064, 1120
FbaI	TGATCA	1 cut(s)	573
Fnu4HI	GCNGC	5 cut(s)	247, 391, 722, 858, 885
FokI	GGATG	7 cut(s)	290, 397, 494, 876, 908, 946, 1079
Fsp4HI	GCNGC	5 cut(s)	247, 391, 722, 858, 885
FspBI	CTAG	5 cut(s)	333, 524, 621, 704, 747
GluI	GCNGC	5 cut(s)	247, 391, 722, 858, 885
GsaI	CCCAGC	1 cut(s)	721
HaeIII	GGCC	1 cut(s)	778
HapII	CCGG	2 cut(s)	243, 1112
HgaI	GACGC	1 cut(s)	576
Hin1I	GRCGYC	1 cut(s)	587
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HinfI	GANTC	6 cut(s)	208, 286, 380, 535, 707, 1079
HpaII	CCGG	2 cut(s)	243, 1112
HphI	GGTGA	4 cut(s)	182, 226, 232, 689
Hpy166II	GTNNAC	3 cut(s)	15, 239, 644
Hpy188I	TCNGA	9 cut(s)	85, 193, 385, 592, 612, 655, 669, 1078, 1084
Hpy188III	TCNNGA	5 cut(s)	203, 418, 694, 704, 869
Hpy8I	GTNNAC	3 cut(s)	15, 239, 644
Hpy99I	CGWCG	1 cut(s)	254
HpyCH4V	TGCA	4 cut(s)	410, 430, 549, 644
HpyF10VI	GCNNNNNNNGC	2 cut(s)	823, 972
HpyF3I	CTNAG	1 cut(s)	24
Hsp92I	GRCGYC	1 cut(s)	587
Ksp22I	TGATCA	1 cut(s)	573
Kzo9I	GATC	4 cut(s)	91, 573, 612, 897
LmnI	GCTCC	2 cut(s)	13, 52
Lsp1109I	GCAGC	4 cut(s)	233, 733, 844, 871
LweI	GCATC	3 cut(s)	419, 676, 930
MaeI	CTAG	5 cut(s)	333, 524, 621, 704, 747
MaeIII	GTNAC	3 cut(s)	72, 163, 712
MalI	GATC	4 cut(s)	93, 575, 614, 899
MbiI	CCGCTC	1 cut(s)	826
MboI	GATC	4 cut(s)	91, 573, 612, 897
MboII	GAAGA	6 cut(s)	338, 365, 374, 747, 933, 992
MfeI	CAATTG	1 cut(s)	507
MflI	RGATCY	1 cut(s)	612
MhlI	GDGCHC	2 cut(s)	604, 646
MluCI	AATT	4 cut(s)	153, 507, 606, 999
MlyI	GAGTC	1 cut(s)	202
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	9 cut(s)	34, 121, 223, 470, 510, 750, 763, 986, 1078
MseI	TTAA	1 cut(s)	1032
MspCI	CTTAAG	1 cut(s)	1031
MspI	CCGG	2 cut(s)	243, 1112
MspR9I	CCNGG	3 cut(s)	38, 243, 927
MunI	CAATTG	1 cut(s)	507
MvaI	CCWGG	2 cut(s)	38, 927
MvnI	CGCG	2 cut(s)	393, 1092
MwoI	GCNNNNNNNGC	2 cut(s)	823, 972
NciI	CCSGG	1 cut(s)	243
NdeII	GATC	4 cut(s)	91, 573, 612, 897
NlaIV	GGNNCC	3 cut(s)	45, 54, 614
PfeI	GAWTC	5 cut(s)	286, 380, 535, 707, 1079
PkrI	GCNGC	5 cut(s)	248, 392, 723, 859, 886
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
PpuMI	RGGWCCY	1 cut(s)	43
PsiI	TTATAA	1 cut(s)	1022
Psp5II	RGGWCCY	1 cut(s)	43
Psp6I	CCWGG	2 cut(s)	36, 925
PspFI	CCCAGC	1 cut(s)	717
PspGI	CCWGG	2 cut(s)	36, 925
PspN4I	GGNNCC	3 cut(s)	45, 54, 614
PspPI	GGNCC	4 cut(s)	43, 776, 1087, 1109
PspPPI	RGGWCCY	1 cut(s)	43
PsuI	RGATCY	1 cut(s)	612
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	1032
SatI	GCNGC	5 cut(s)	247, 391, 722, 858, 885
Sau3AI	GATC	4 cut(s)	91, 573, 612, 897
Sau96I	GGNCC	4 cut(s)	43, 776, 1087, 1109
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	3 cut(s)	38, 243, 927
SduI	GDGCHC	2 cut(s)	604, 646
SfaNI	GCATC	3 cut(s)	419, 676, 930
SinI	GGWCC	3 cut(s)	43, 1087, 1109
SmlI	CTYRAG	2 cut(s)	831, 1031
SmoI	CTYRAG	2 cut(s)	831, 1031
SpeI	ACTAGT	1 cut(s)	332
Sse9I	AATT	4 cut(s)	153, 507, 606, 999
SsiI	CCGC	7 cut(s)	32, 391, 689, 815, 826, 1090, 1115
SspMI	CTAG	5 cut(s)	333, 524, 621, 704, 747
StyD4I	CCNGG	3 cut(s)	36, 241, 925
TaqI	TCGA	4 cut(s)	94, 289, 371, 533
TasI	AATT	4 cut(s)	153, 507, 606, 999
TauI	GCSGC	1 cut(s)	393
TfiI	GAWTC	5 cut(s)	286, 380, 535, 707, 1079
Tru1I	TTAA	1 cut(s)	1032
Tru9I	TTAA	1 cut(s)	1032
TscAI	CASTG	1 cut(s)	900
TseI	GCWGC	4 cut(s)	246, 721, 857, 884
TspDTI	ATGAA	2 cut(s)	899, 950
TspGWI	ACGGA	2 cut(s)	403, 700
TspRI	CASTG	1 cut(s)	900
Vha464I	CTTAAG	1 cut(s)	1031
VneI	GTGCAC	1 cut(s)	642
VpaK11BI	GGWCC	3 cut(s)	43, 1087, 1109
XapI	RAATTY	1 cut(s)	606
XbaI	TCTAGA	1 cut(s)	703
XspI	CTAG	5 cut(s)	333, 524, 621, 704, 747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.