Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8280915.1

Orthogroup ID

OG0006137

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 808

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8280915.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atgtttcctcatcccctatcatcaccaaacaatgtccctgatatgatctctagaaatcacaggtctcctataaaagctgctattagaattgccctgattgtaggtctgcttggtggtggtgctattgtagccctctcatgcatgatgatctattatagggcccactgtcaaggatgtagaaagagaggtcaaaaagcaagctgtgaaaagaatggtgttgtgcaaggggactcttccctttctcatagatcagtacctggcaaaactgaagacttaaaatcttcatatggtttccttcaagacccttcgccatcatccgcaagggagtctactcataatgccggtgacacttcatcagttctagagaagtctaaacaattgggtcatcctgaatcaacaaagctagaggaaggggtatcttctcccatgtctctcttatcgccttcaaacccattgccttcgaaaagccaagaaccactcaatagttctgctgttctcaacacttgttctccagacaaactagctggtgatttacatatgtttgatggctccctggcattcacagcagaagaactttcatgtgctcccgcagaagctattggaaggagttgtcatggaacaatgtacaaagcaatgctcgagtctggtcatgtaattgctgtcaaatggttaagggagggaatagcaaaaggaaggaaagaatttgctagagaagtaaagaaacttgggagcatccgccatccaaatctagtttctttgcagggttactattggggcccaaaggagcatgagaaacttattatatca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase_Tyr

Protein Analysis

269

Amino Acids

29.0

Weight (kDa)

9.03

Isoelectric Point (pI)

56.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27060 AT2G27060 AT2G27060
fragaria_vesca	FvH4_3g27680 FvH4_3g27680 FvH4_3g27680 FvH4_3g27680 FvH4_3g27680
malus_domestica	MD11G1182700.v1.1
prunus_persica	Prupe.6G155300_v2.0.a1 Prupe.6G155300_v2.0.a1 Prupe.6G155300_v2.0.a1
pyrus_communis	pycom11g15780 pycom11g15790
rosa_chinensis	RchiOBHm_Chr5g0049971
rosa_laevigata	RLG00000034671
rosa_multiflora	Rmu_co8280915.1_g000001 Rmu_co8319145.1_g000001 Rmu_sc0000333.1_g000029
rosa_roxburghii	Rroxscaffold_1G00031220
rosa_rugosa	Rorug05G0255700 Rorug05G0255800
rosa_samantha	Rh5AG329200 Rh5BG339700 Rh5CG365800 Rh5DG352300
rosa_wichuraiana	Rw5G031080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	329
AciI	CCGC	3 cut(s)	318, 588, 736
AcsI	RAATTY	1 cut(s)	701
AcuI	CTGAAG	1 cut(s)	288
AfaI	GTAC	2 cut(s)	255, 626
AgsI	TTSAA	2 cut(s)	299, 447
AjnI	CCWGG	2 cut(s)	256, 552
AjuI	GAANNNNNNNTTGG	2 cut(s)	736, 768
AluBI	AGCT	5 cut(s)	77, 201, 403, 524, 596
AluI	AGCT	5 cut(s)	77, 201, 403, 524, 596
Alw21I	GWGCWC	1 cut(s)	586
Alw26I	GTCTC	2 cut(s)	69, 435
AlwNI	CAGNNNCTG	1 cut(s)	257
Ama87I	CYCGRG	1 cut(s)	638
AoxI	GGCC	2 cut(s)	159, 775
ApaI	GGGCCC	2 cut(s)	163, 779
ApeKI	GCWGC	1 cut(s)	77
ApoI	RAATTY	1 cut(s)	701
AspS9I	GGNCC	4 cut(s)	159, 160, 775, 776
AsuHPI	GGTGA	3 cut(s)	15, 356, 539
AsuII	TTCGAA	1 cut(s)	461
AvaI	CYCGRG	1 cut(s)	638
BaeGI	GKGCMC	2 cut(s)	163, 779
BanII	GRGCYC	2 cut(s)	163, 779
BbsI	GAAGAC	1 cut(s)	276
Bbv12I	GWGCWC	1 cut(s)	586
BbvI	GCAGC	1 cut(s)	64
BccI	CCATC	3 cut(s)	319, 539, 747
BciT130I	CCWGG	2 cut(s)	258, 554
BcoDI	GTCTC	2 cut(s)	69, 435
BfaI	CTAG	6 cut(s)	51, 362, 404, 521, 708, 749
BisI	GCNGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	79
Bme1390I	CCNGG	2 cut(s)	258, 554
BmeT110I	CYCGRG	1 cut(s)	638
BmgT120I	GGNCC	4 cut(s)	159, 160, 775, 776
BmiI	GGNNCC	4 cut(s)	161, 550, 776, 777
BmrFI	CCNGG	2 cut(s)	258, 554
BmsI	GCATC	1 cut(s)	741
BpiI	GAAGAC	1 cut(s)	276
BpmI	CTGGAG	1 cut(s)	495
Bpu14I	TTCGAA	1 cut(s)	461
BsaI	GGTCTC	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	552
BsaXI	ACNNNNNCTCC	2 cut(s)	493, 523
Bse118I	RCCGGY	1 cut(s)	341
Bse3DI	GCAATG	2 cut(s)	452, 639
BseBI	CCWGG	2 cut(s)	258, 554
BseDI	CCNNGG	1 cut(s)	552
BseGI	GGATG	6 cut(s)	10, 179, 314, 385, 732, 739
BseMI	GCAATG	2 cut(s)	452, 639
BseSI	GKGCMC	2 cut(s)	163, 779
BseXI	GCAGC	1 cut(s)	64
BshFI	GGCC	2 cut(s)	161, 777
BsiHKAI	GWGCWC	1 cut(s)	586
BsiHKCI	CYCGRG	1 cut(s)	638
BsiSI	CCGG	1 cut(s)	342
BslFI	GGGAC	2 cut(s)	20, 242
BsmAI	GTCTC	2 cut(s)	69, 435
BsmFI	GGGAC	2 cut(s)	20, 242
BsmI	GAATGC	1 cut(s)	557
BsnI	GGCC	2 cut(s)	161, 777
Bso31I	GGTCTC	1 cut(s)	69
BsoBI	CYCGRG	1 cut(s)	638
Bsp119I	TTCGAA	1 cut(s)	461
Bsp120I	GGGCCC	2 cut(s)	159, 775
Bsp1286I	GDGCHC	3 cut(s)	163, 586, 779
Bsp1407I	TGTACA	1 cut(s)	624
Bsp143I	GATC	3 cut(s)	45, 147, 248
BspACI	CCGC	3 cut(s)	318, 588, 736
BspANI	GGCC	2 cut(s)	161, 777
BspLI	GGNNCC	4 cut(s)	161, 550, 776, 777
BspT104I	TTCGAA	1 cut(s)	461
BspTNI	GGTCTC	1 cut(s)	69
BsrDI	GCAATG	2 cut(s)	452, 639
BsrFI	RCCGGY	1 cut(s)	341
BsrGI	TGTACA	1 cut(s)	624
BssAI	RCCGGY	1 cut(s)	341
BssECI	CCNNGG	1 cut(s)	552
BssMI	GATC	3 cut(s)	45, 147, 248
Bst2UI	CCWGG	2 cut(s)	258, 554
Bst4CI	ACNGT	1 cut(s)	167
Bst6I	CTCTTC	1 cut(s)	238
BstAUI	TGTACA	1 cut(s)	624
BstBI	TTCGAA	1 cut(s)	461
BstC8I	GCNNGC	1 cut(s)	199
BstF5I	GGATG	6 cut(s)	10, 179, 314, 385, 732, 739
BstKTI	GATC	3 cut(s)	48, 150, 251
BstMAI	GTCTC	2 cut(s)	69, 435
BstMBI	GATC	3 cut(s)	45, 147, 248
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 563
BstNI	CCWGG	2 cut(s)	258, 554
BstSCI	CCNGG	2 cut(s)	256, 552
BstSLI	GKGCMC	2 cut(s)	163, 779
BstV1I	GCAGC	1 cut(s)	64
BstV2I	GAAGAC	1 cut(s)	276
BsuRI	GGCC	2 cut(s)	161, 777
BtsCI	GGATG	6 cut(s)	10, 179, 314, 385, 732, 739
BtsIMutI	CAGTG	1 cut(s)	163
Cac8I	GCNNGC	1 cut(s)	199
CaiI	CAGNNNCTG	1 cut(s)	257
Cfr10I	RCCGGY	1 cut(s)	341
Cfr13I	GGNCC	4 cut(s)	159, 160, 775, 776
Csp6I	GTAC	2 cut(s)	254, 625
CviAII	CATG	7 cut(s)	138, 142, 427, 579, 614, 650, 788
CviQI	GTAC	2 cut(s)	254, 625
DpnI	GATC	3 cut(s)	47, 149, 250
DpnII	GATC	3 cut(s)	45, 147, 248
Eam1104I	CTCTTC	1 cut(s)	238
EarI	CTCTTC	1 cut(s)	238
EciI	GGCGGA	1 cut(s)	725
Eco24I	GRGCYC	2 cut(s)	163, 779
Eco31I	GGTCTC	1 cut(s)	69
Eco57I	CTGAAG	1 cut(s)	288
Eco88I	CYCGRG	1 cut(s)	638
EcoO109I	RGGNCCY	2 cut(s)	159, 775
EcoRII	CCWGG	2 cut(s)	256, 552
EcoT22I	ATGCAT	1 cut(s)	143
EcoT38I	GRGCYC	2 cut(s)	163, 779
FaeI	CATG	7 cut(s)	141, 145, 430, 582, 617, 653, 791
FaqI	GGGAC	2 cut(s)	20, 242
FatI	CATG	7 cut(s)	137, 141, 426, 578, 613, 649, 787
FauI	CCCGC	1 cut(s)	595
FauNDI	CATATG	2 cut(s)	286, 537
FblI	GTMKAC	1 cut(s)	329
Fnu4HI	GCNGC	1 cut(s)	78
FokI	GGATG	5 cut(s)	186, 301, 372, 719, 726
FriOI	GRGCYC	2 cut(s)	163, 779
Fsp4HI	GCNGC	1 cut(s)	78
FspBI	CTAG	6 cut(s)	51, 362, 404, 521, 708, 749
GluI	GCNGC	1 cut(s)	78
GsuI	CTGGAG	1 cut(s)	495
HaeIII	GGCC	2 cut(s)	161, 777
HapII	CCGG	1 cut(s)	342
Hin1II	CATG	7 cut(s)	141, 145, 430, 582, 617, 653, 791
HinfI	GANTC	4 cut(s)	230, 326, 392, 641
HpaII	CCGG	1 cut(s)	342
HphI	GGTGA	3 cut(s)	15, 356, 539
Hpy166II	GTNNAC	1 cut(s)	330
Hpy188III	TCNNGA	5 cut(s)	51, 299, 362, 389, 512
Hpy8I	GTNNAC	1 cut(s)	330
HpyAV	CCTTC	7 cut(s)	305, 315, 404, 453, 468, 597, 687
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4V	TGCA	3 cut(s)	141, 223, 760
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 563
Hsp92II	CATG	7 cut(s)	141, 145, 430, 582, 617, 653, 791
Kzo9I	GATC	3 cut(s)	45, 147, 248
LmnI	GCTCC	4 cut(s)	554, 589, 729, 784
Lsp1109I	GCAGC	1 cut(s)	64
LweI	GCATC	1 cut(s)	741
MaeI	CTAG	6 cut(s)	51, 362, 404, 521, 708, 749
MaeIII	GTNAC	2 cut(s)	344, 764
MalI	GATC	3 cut(s)	47, 149, 250
MboI	GATC	3 cut(s)	45, 147, 248
MboII	GAAGA	5 cut(s)	225, 273, 281, 411, 581
MfeI	CAATTG	1 cut(s)	377
MhlI	GDGCHC	3 cut(s)	163, 586, 779
MluCI	AATT	4 cut(s)	87, 377, 654, 701
MlyI	GAGTC	3 cut(s)	224, 335, 650
MnlI	CCTC	5 cut(s)	18, 143, 179, 400, 670
Mph1103I	ATGCAT	1 cut(s)	143
MseI	TTAA	2 cut(s)	275, 671
MspI	CCGG	1 cut(s)	342
MspR9I	CCNGG	2 cut(s)	258, 554
MunI	CAATTG	1 cut(s)	377
Mva1269I	GAATGC	1 cut(s)	557
MvaI	CCWGG	2 cut(s)	258, 554
MwoI	GCNNNNNNNGC	2 cut(s)	128, 563
NdeI	CATATG	2 cut(s)	286, 537
NdeII	GATC	3 cut(s)	45, 147, 248
NlaIII	CATG	7 cut(s)	141, 145, 430, 582, 617, 653, 791
NlaIV	GGNNCC	4 cut(s)	161, 550, 776, 777
NmuCI	GTSAC	1 cut(s)	344
NsiI	ATGCAT	1 cut(s)	143
NspV	TTCGAA	1 cut(s)	461
PaeR7I	CTCGAG	1 cut(s)	638
PctI	GAATGC	1 cut(s)	557
PfeI	GAWTC	1 cut(s)	392
PkrI	GCNGC	1 cut(s)	79
PleI	GAGTC	3 cut(s)	224, 334, 649
PpsI	GAGTC	3 cut(s)	224, 334, 649
Psp6I	CCWGG	2 cut(s)	256, 552
PspGI	CCWGG	2 cut(s)	256, 552
PspN4I	GGNNCC	4 cut(s)	161, 550, 776, 777
PspOMI	GGGCCC	2 cut(s)	159, 775
PspPI	GGNCC	4 cut(s)	159, 160, 775, 776
PspXI	VCTCGAGB	1 cut(s)	638
PstNI	CAGNNNCTG	1 cut(s)	257
RsaI	GTAC	2 cut(s)	255, 626
RsaNI	GTAC	2 cut(s)	254, 625
SaqAI	TTAA	2 cut(s)	275, 671
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	3 cut(s)	45, 147, 248
Sau96I	GGNCC	4 cut(s)	159, 160, 775, 776
SchI	GAGTC	3 cut(s)	224, 335, 650
ScrFI	CCNGG	2 cut(s)	258, 554
SduI	GDGCHC	3 cut(s)	163, 586, 779
SetI	ASST	9 cut(s)	65, 79, 106, 190, 203, 259, 405, 526, 598
SfaNI	GCATC	1 cut(s)	741
Sfr274I	CTCGAG	1 cut(s)	638
SfuI	TTCGAA	1 cut(s)	461
SlaI	CTCGAG	1 cut(s)	638
SmlI	CTYRAG	1 cut(s)	638
SmoI	CTYRAG	1 cut(s)	638
Sse9I	AATT	4 cut(s)	87, 377, 654, 701
SsiI	CCGC	3 cut(s)	318, 588, 736
SspMI	CTAG	6 cut(s)	51, 362, 404, 521, 708, 749
StyD4I	CCNGG	2 cut(s)	256, 552
TaaI	ACNGT	1 cut(s)	167
TaqI	TCGA	2 cut(s)	461, 639
TasI	AATT	4 cut(s)	87, 377, 654, 701
TatI	WGTACW	1 cut(s)	624
TfiI	GAWTC	1 cut(s)	392
Tru1I	TTAA	2 cut(s)	275, 671
Tru9I	TTAA	2 cut(s)	275, 671
TscAI	CASTG	1 cut(s)	170
TseFI	GTSAC	1 cut(s)	344
TseI	GCWGC	1 cut(s)	77
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	3 cut(s)	273, 342, 567
TspRI	CASTG	1 cut(s)	170
XapI	RAATTY	1 cut(s)	701
XbaI	TCTAGA	2 cut(s)	50, 361
XhoI	CTCGAG	1 cut(s)	638
XmiI	GTMKAC	1 cut(s)	329
XspI	CTAG	6 cut(s)	51, 362, 404, 521, 708, 749
Zsp2I	ATGCAT	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.