Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006137

Physical Location & Seq

Genomic Coordinates Reverse (-)

28568983 .. 28572336

Gene Structure 3354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0255800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGGCAGATGAATTTCAGAATACTGGGAACTGGTGGGACTCATCCTCAACCTCAAGAAACAGGTTTGAAACCGGTGCATCGCCACCATCTTCAAGCCTCAATAGCTTGGGAAGCTTTGGATGGCAACCAGACATGATTGAAATCAAGGCAAGGTCTTCTATGGATTCCGGGTCGGTCTCCGGTACTTCTTCAATGGTCTTCCATGATCCTCAGAAGCTGCAAGGGTCTGATTCTTCCAGTGGAGGCGACCCTAGCTTGCACATGATGGGTTTAGGGCTTAACTCTCAGGCGACAGATTGGAACCAAGCCATATTTCGGGGTGAGAAGGCCGACCCCAGTTTTCGTTCAATATTACAAGACAACATGAACTCCAACGCAAACTTTCAGCAAGAAACACACGATCAGCAACAACTCCAGTGGAGAGACAAGTTGTTTACTGCCAGCTCCGCCGAAATGAGCCGGGGTTTTTCTTTAGACCAAACGCAGTTTAGTCCTCAATATAGCTCCGGCGAAAGCACAGTGACATGTCAAGGCATGCCCACTAGTTTTCAAATGGATTCAGCAGCTTTATACGGGACCAGTCCAACAACCATATTACAAGGACTGCTGGGATCACCTCATGATCATAATCAGCCACAACCGCCTTCAACCTCTATCATTTTTCCATATCAAGCAAGTTATGGCATTAACTCGACTGAACTATTGCCTTCTTGGTCTAACAAAGTCCCTCAGTTTCTAAGAACATCACCTCCAAAACACCCTTCTAACAGTCCTCATAGCCATTTGCAATTTTCTAATAACGCTCCCTTTTGGAATGCACCTCATGAGGCAGCCATGAAAGATGTCCGGCCGACCTTTTTCCCGTCATTGCAACCACAATTTCCCACGGCACGCTTCGATGAGAAACCAAAGAATATATCTGAAGTTCATCAGGATTCTGGTGCGATGGTGAAGAAAAGTGGGAGTGAAGCAGCATCCAAAAGGCCTCGAAATGAAACGTCATCAACTTTGCCAGCTTTTAAGGTGAGGAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTTTCGCCTTTCGGAAAGACTGATACAGCCTCAGTTCTCTCTGAAGCCATTGAATATATCAAGTTCCTCCATGAACAAGTTTCCGTTTTAAGCAACCCATACATGAAAAGTGGAGCTGCCATACAACACCAGCAGAAATCTGATAAATCTAAAGACCTTGAAGGTCCCAAACATGACCTAAGAAGCCGTGGACTATGTTTGGTTCCAGTTTCGAGCACCTTCCCGGCCGCACATGAGACAACAGTTGATTTTTGGACGCCTACATTTGGAGGAACATTCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase_Tyr

Protein Analysis

451

Amino Acids

49.66

Weight (kDa)

6.4

Isoelectric Point (pI)

59.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27060 AT2G27060 AT2G27060
fragaria_vesca	FvH4_3g27680 FvH4_3g27680 FvH4_3g27680 FvH4_3g27680 FvH4_3g27680
malus_domestica	MD11G1182700.v1.1
prunus_persica	Prupe.6G155300_v2.0.a1 Prupe.6G155300_v2.0.a1 Prupe.6G155300_v2.0.a1
pyrus_communis	pycom11g15780 pycom11g15790
rosa_chinensis	RchiOBHm_Chr5g0049971
rosa_laevigata	RLG00000034671
rosa_multiflora	Rmu_co8280915.1_g000001 Rmu_co8319145.1_g000001 Rmu_sc0000333.1_g000029
rosa_roxburghii	Rroxscaffold_1G00031220
rosa_rugosa	Rorug05G0255700 Rorug05G0255800
rosa_samantha	Rh5AG329200 Rh5BG339700 Rh5CG365800 Rh5DG352300
rosa_wichuraiana	Rw5G031080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1069
AciI	CCGC	3 cut(s)	447, 641, 1299
AclWI	GGATC	2 cut(s)	200, 619
AcoI	YGGCCR	2 cut(s)	848, 1296
AcsI	RAATTY	1 cut(s)	11
AcuI	CTGAAG	2 cut(s)	942, 1134
AcyI	GRCGYC	1 cut(s)	1328
AfaI	GTAC	1 cut(s)	184
AfiI	CCNNNNNNNGG	3 cut(s)	315, 1069, 1337
AflIII	ACRYGT	1 cut(s)	524
AgeI	ACCGGT	1 cut(s)	71
AgsI	TTSAA	9 cut(s)	68, 93, 140, 192, 348, 551, 648, 1124, 1232
AhlI	ACTAGT	1 cut(s)	542
AjuI	GAANNNNNNNTTGG	4 cut(s)	297, 329, 745, 777
AloI	GAACNNNNNNTCC	2 cut(s)	733, 765
AluBI	AGCT	9 cut(s)	105, 114, 217, 255, 444, 504, 566, 1016, 1187
AluI	AGCT	9 cut(s)	105, 114, 217, 255, 444, 504, 566, 1016, 1187
Alw21I	GWGCWC	1 cut(s)	1289
Alw26I	GTCTC	3 cut(s)	181, 417, 1301
AlwI	GGATC	2 cut(s)	200, 619
AlwNI	CAGNNNCTG	1 cut(s)	217
AoxI	GGCC	4 cut(s)	327, 848, 983, 1296
ApeKI	GCWGC	5 cut(s)	217, 563, 830, 971, 1187
ApoI	RAATTY	1 cut(s)	11
AsiGI	ACCGGT	1 cut(s)	71
AspS9I	GGNCC	2 cut(s)	576, 1235
AsuC2I	CCSGG	3 cut(s)	169, 461, 1295
AsuHPI	GGTGA	5 cut(s)	332, 606, 738, 961, 1036
AvaII	GGWCC	2 cut(s)	576, 1235
BbsI	GAAGAC	2 cut(s)	147, 190
Bbv12I	GWGCWC	1 cut(s)	1289
BbvI	GCAGC	5 cut(s)	204, 575, 842, 983, 1174
BccI	CCATC	5 cut(s)	94, 114, 259, 940, 1033
BceAI	ACGGC	2 cut(s)	903, 1242
BclI	TGATCA	1 cut(s)	622
BcnI	CCSGG	3 cut(s)	169, 461, 1295
BcoDI	GTCTC	3 cut(s)	181, 417, 1301
BcuI	ACTAGT	1 cut(s)	542
BfaI	CTAG	2 cut(s)	252, 543
BisI	GCNGC	6 cut(s)	218, 564, 831, 972, 1188, 1299
BlsI	GCNGC	6 cut(s)	219, 565, 832, 973, 1189, 1300
Bme1390I	CCNGG	3 cut(s)	169, 461, 1295
Bme18I	GGWCC	2 cut(s)	576, 1235
BmgT120I	GGNCC	2 cut(s)	576, 1235
BmiI	GGNNCC	4 cut(s)	302, 577, 1237, 1275
BmrFI	CCNGG	3 cut(s)	169, 461, 1295
BmrI	ACTGGG	2 cut(s)	33, 330
BmsI	GCATC	2 cut(s)	86, 983
BmuI	ACTGGG	2 cut(s)	33, 330
BpiI	GAAGAC	2 cut(s)	147, 190
BpmI	CTGGAG	1 cut(s)	398
BpuEI	CTTGAG	1 cut(s)	37
BpuMI	CCSGG	3 cut(s)	169, 461, 1295
BsaBI	GATNNNNATC	2 cut(s)	140, 627
BsaHI	GRCGYC	1 cut(s)	1328
BsaI	GGTCTC	1 cut(s)	181
BsaJI	CCNNGG	3 cut(s)	460, 885, 1258
BsaWI	WCCGGW	2 cut(s)	71, 179
BsaXI	ACNNNNNCTCC	4 cut(s)	353, 383, 733, 763
Bsc4I	CCNNNNNNNGG	3 cut(s)	315, 1069, 1337
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	7 cut(s)	28, 35, 237, 336, 415, 579, 1277
Bse3DI	GCAATG	1 cut(s)	866
Bse8I	GATNNNNATC	2 cut(s)	140, 627
BseDI	CCNNGG	3 cut(s)	460, 885, 1258
BseGI	GGATG	3 cut(s)	41, 125, 974
BseJI	GATNNNNATC	2 cut(s)	140, 627
BseLI	CCNNNNNNNGG	3 cut(s)	315, 1069, 1337
BseMI	GCAATG	1 cut(s)	866
BseMII	CTCAG	4 cut(s)	224, 299, 743, 1116
BseNI	ACTGG	7 cut(s)	28, 35, 237, 336, 415, 579, 1277
BseX3I	CGGCCG	2 cut(s)	848, 1296
BseXI	GCAGC	5 cut(s)	204, 575, 842, 983, 1174
BseYI	CCCAGC	1 cut(s)	607
BsgI	GTGCAG	1 cut(s)	1041
Bsh1285I	CGRYCG	2 cut(s)	851, 1299
BshFI	GGCC	4 cut(s)	329, 850, 985, 1298
BshTI	ACCGGT	1 cut(s)	71
BsiEI	CGRYCG	2 cut(s)	851, 1299
BsiHKAI	GWGCWC	1 cut(s)	1289
BsiSI	CCGG	7 cut(s)	72, 168, 180, 460, 507, 847, 1295
BslFI	GGGAC	5 cut(s)	50, 589, 710, 1058, 1221
BslI	CCNNNNNNNGG	3 cut(s)	315, 1069, 1337
BsmAI	GTCTC	3 cut(s)	181, 417, 1301
BsmFI	GGGAC	5 cut(s)	50, 589, 710, 1058, 1221
BsmI	GAATGC	1 cut(s)	820
BsnI	GGCC	4 cut(s)	329, 850, 985, 1298
Bso31I	GGTCTC	1 cut(s)	181
Bsp1286I	GDGCHC	1 cut(s)	1289
Bsp143I	GATC	4 cut(s)	205, 400, 611, 622
BspACI	CCGC	3 cut(s)	447, 641, 1299
BspANI	GGCC	4 cut(s)	329, 850, 985, 1298
BspCNI	CTCAG	4 cut(s)	223, 298, 742, 1115
BspHI	TCATGA	2 cut(s)	619, 823
BspLI	GGNNCC	4 cut(s)	302, 577, 1237, 1275
BspPI	GGATC	2 cut(s)	200, 619
BspTNI	GGTCTC	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	866
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	7 cut(s)	28, 35, 237, 336, 415, 579, 1277
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	3 cut(s)	460, 885, 1258
BssMI	GATC	4 cut(s)	205, 400, 611, 622
BssNI	GRCGYC	1 cut(s)	1328
Bst4CI	ACNGT	3 cut(s)	520, 770, 1315
BstACI	GRCGYC	1 cut(s)	1328
BstC8I	GCNNGC	5 cut(s)	257, 442, 536, 892, 1014
BstDEI	CTNAG	6 cut(s)	210, 285, 729, 737, 1102, 1250
BstDSI	CCRYGG	2 cut(s)	885, 1258
BstF5I	GGATG	3 cut(s)	41, 125, 974
BstKTI	GATC	4 cut(s)	208, 403, 614, 625
BstMAI	GTCTC	3 cut(s)	181, 417, 1301
BstMBI	GATC	4 cut(s)	205, 400, 611, 622
BstMCI	CGRYCG	2 cut(s)	851, 1299
BstMWI	GCNNNNNNNGC	5 cut(s)	102, 111, 252, 446, 640
BstNSI	RCATGY	2 cut(s)	528, 538
BstSCI	CCNGG	3 cut(s)	167, 459, 1293
BstV1I	GCAGC	5 cut(s)	204, 575, 842, 983, 1174
BstV2I	GAAGAC	2 cut(s)	147, 190
BstZI	CGGCCG	2 cut(s)	848, 1296
BsuRI	GGCC	4 cut(s)	329, 850, 985, 1298
BtgI	CCRYGG	2 cut(s)	885, 1258
BtgZI	GCGATG	2 cut(s)	63, 959
BtsCI	GGATG	3 cut(s)	41, 125, 974
BtsI	GCAGTG	1 cut(s)	1053
BtsIMutI	CAGTG	4 cut(s)	244, 422, 525, 1053
Cac8I	GCNNGC	5 cut(s)	257, 442, 536, 892, 1014
CaiI	CAGNNNCTG	1 cut(s)	217
CciI	TCATGA	2 cut(s)	619, 823
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	2 cut(s)	576, 1235
CseI	GACGC	1 cut(s)	1336
Csp6I	GTAC	1 cut(s)	183
CspAI	ACCGGT	1 cut(s)	71
CspCI	CAANNNNNGTGG	2 cut(s)	398, 433
CviQI	GTAC	1 cut(s)	183
DdeI	CTNAG	6 cut(s)	210, 285, 729, 737, 1102, 1250
DpnI	GATC	4 cut(s)	207, 402, 613, 624
DpnII	GATC	4 cut(s)	205, 400, 611, 622
EaeI	YGGCCR	2 cut(s)	848, 1296
EagI	CGGCCG	2 cut(s)	848, 1296
EciI	GGCGGA	1 cut(s)	436
EclXI	CGGCCG	2 cut(s)	848, 1296
Eco147I	AGGCCT	1 cut(s)	985
Eco31I	GGTCTC	1 cut(s)	181
Eco47I	GGWCC	2 cut(s)	576, 1235
Eco52I	CGGCCG	2 cut(s)	848, 1296
Eco57I	CTGAAG	2 cut(s)	942, 1134
EcoO109I	RGGNCCY	1 cut(s)	1235
FaqI	GGGAC	5 cut(s)	50, 589, 710, 1058, 1221
FbaI	TGATCA	1 cut(s)	622
Fnu4HI	GCNGC	6 cut(s)	218, 564, 831, 972, 1188, 1299
FokI	GGATG	3 cut(s)	28, 132, 961
Fsp4HI	GCNGC	6 cut(s)	218, 564, 831, 972, 1188, 1299
FspBI	CTAG	2 cut(s)	252, 543
GluI	GCNGC	6 cut(s)	218, 564, 831, 972, 1188, 1299
GsaI	CCCAGC	1 cut(s)	611
GsuI	CTGGAG	1 cut(s)	398
HaeIII	GGCC	4 cut(s)	329, 850, 985, 1298
HapII	CCGG	7 cut(s)	72, 168, 180, 460, 507, 847, 1295
HgaI	GACGC	1 cut(s)	1336
Hin1I	GRCGYC	1 cut(s)	1328
HindIII	AAGCTT	1 cut(s)	112
HinfI	GANTC	6 cut(s)	38, 164, 230, 557, 935, 1050
HpaII	CCGG	7 cut(s)	72, 168, 180, 460, 507, 847, 1295
HphI	GGTGA	5 cut(s)	332, 606, 738, 961, 1036
Hpy166II	GTNNAC	2 cut(s)	435, 1262
Hpy188I	TCNGA	8 cut(s)	18, 213, 229, 922, 1085, 1114, 1213, 1352
Hpy188III	TCNNGA	4 cut(s)	54, 620, 824, 932
Hpy8I	GTNNAC	2 cut(s)	435, 1262
HpyAV	CCTTC	6 cut(s)	319, 654, 717, 771, 1226, 1300
HpyCH4III	ACNGT	3 cut(s)	520, 770, 1315
HpyCH4IV	ACGT	1 cut(s)	998
HpyCH4V	TGCA	7 cut(s)	77, 220, 259, 787, 818, 871, 1058
HpyF10VI	GCNNNNNNNGC	5 cut(s)	102, 111, 252, 446, 640
HpyF3I	CTNAG	6 cut(s)	210, 285, 729, 737, 1102, 1250
HpySE526I	ACGT	1 cut(s)	998
Hsp92I	GRCGYC	1 cut(s)	1328
Ksp22I	TGATCA	1 cut(s)	622
Kzo9I	GATC	4 cut(s)	205, 400, 611, 622
LmnI	GCTCC	4 cut(s)	449, 509, 808, 1184
Lsp1109I	GCAGC	5 cut(s)	204, 575, 842, 983, 1174
LweI	GCATC	2 cut(s)	86, 983
MaeI	CTAG	2 cut(s)	252, 543
MaeII	ACGT	1 cut(s)	998
MaeIII	GTNAC	1 cut(s)	520
MalI	GATC	4 cut(s)	207, 402, 613, 624
MboI	GATC	4 cut(s)	205, 400, 611, 622
MboII	GAAGA	7 cut(s)	81, 147, 180, 190, 225, 964, 1048
MfeI	CAATTG	1 cut(s)	1067
MhlI	GDGCHC	1 cut(s)	1289
MluCI	AATT	4 cut(s)	11, 788, 878, 1067
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	3 cut(s)	396, 608, 1087
MseI	TTAA	4 cut(s)	279, 687, 1020, 1160
MspI	CCGG	7 cut(s)	72, 168, 180, 460, 507, 847, 1295
MspR9I	CCNGG	3 cut(s)	169, 461, 1295
MunI	CAATTG	1 cut(s)	1067
Mva1269I	GAATGC	1 cut(s)	820
MwoI	GCNNNNNNNGC	5 cut(s)	102, 111, 252, 446, 640
NciI	CCSGG	3 cut(s)	169, 461, 1295
NdeII	GATC	4 cut(s)	205, 400, 611, 622
NlaIV	GGNNCC	4 cut(s)	302, 577, 1237, 1275
NmuCI	GTSAC	1 cut(s)	520
NspI	RCATGY	2 cut(s)	528, 538
PaeI	GCATGC	1 cut(s)	538
PagI	TCATGA	2 cut(s)	619, 823
PceI	AGGCCT	1 cut(s)	985
PciI	ACATGT	1 cut(s)	524
PctI	GAATGC	1 cut(s)	820
PfeI	GAWTC	5 cut(s)	164, 230, 557, 935, 1050
PflMI	CCANNNNNTGG	1 cut(s)	1069
PinAI	ACCGGT	1 cut(s)	71
PkrI	GCNGC	6 cut(s)	219, 565, 832, 973, 1189, 1300
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
PpuMI	RGGWCCY	1 cut(s)	1235
PscI	ACATGT	1 cut(s)	524
Psp5II	RGGWCCY	1 cut(s)	1235
PspFI	CCCAGC	1 cut(s)	607
PspN4I	GGNNCC	4 cut(s)	302, 577, 1237, 1275
PspPI	GGNCC	2 cut(s)	576, 1235
PspPPI	RGGWCCY	1 cut(s)	1235
PstNI	CAGNNNCTG	1 cut(s)	217
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
SaqAI	TTAA	4 cut(s)	279, 687, 1020, 1160
SatI	GCNGC	6 cut(s)	218, 564, 831, 972, 1188, 1299
Sau3AI	GATC	4 cut(s)	205, 400, 611, 622
Sau96I	GGNCC	2 cut(s)	576, 1235
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	3 cut(s)	169, 461, 1295
SduI	GDGCHC	1 cut(s)	1289
SfaNI	GCATC	2 cut(s)	86, 983
SinI	GGWCC	2 cut(s)	576, 1235
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
SpeI	ACTAGT	1 cut(s)	542
SphI	GCATGC	1 cut(s)	538
Sse9I	AATT	4 cut(s)	11, 788, 878, 1067
SseBI	AGGCCT	1 cut(s)	985
SsiI	CCGC	3 cut(s)	447, 641, 1299
SspI	AATATT	1 cut(s)	351
SspMI	CTAG	2 cut(s)	252, 543
StuI	AGGCCT	1 cut(s)	985
StyD4I	CCNGG	3 cut(s)	167, 459, 1293
TaaI	ACNGT	3 cut(s)	520, 770, 1315
TaiI	ACGT	1 cut(s)	1001
TaqI	TCGA	4 cut(s)	692, 897, 988, 1283
TaqII	GACCGA	1 cut(s)	163
TasI	AATT	4 cut(s)	11, 788, 878, 1067
TauI	GCSGC	1 cut(s)	1301
TfiI	GAWTC	5 cut(s)	164, 230, 557, 935, 1050
Tru1I	TTAA	4 cut(s)	279, 687, 1020, 1160
Tru9I	TTAA	4 cut(s)	279, 687, 1020, 1160
TscAI	CASTG	4 cut(s)	244, 422, 525, 1060
TseFI	GTSAC	1 cut(s)	520
TseI	GCWGC	5 cut(s)	217, 563, 830, 971, 1187
Tsp45I	GTSAC	1 cut(s)	520
TspDTI	ATGAA	7 cut(s)	24, 380, 851, 917, 1008, 1158, 1190
TspGWI	ACGGA	1 cut(s)	1144
TspRI	CASTG	4 cut(s)	244, 422, 525, 1060
Van91I	CCANNNNNTGG	1 cut(s)	1069
VpaK11BI	GGWCC	2 cut(s)	576, 1235
XapI	RAATTY	1 cut(s)	11
XceI	RCATGY	2 cut(s)	528, 538
XspI	CTAG	2 cut(s)	252, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.