Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8298943.1

Orthogroup ID

OG0009795

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 842

Gene Structure 842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8298943.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atgcttgcgcatttgtgtttgaagtacagaactaattcagaaggactgcagcagcaagagactcttgatgcactccctcacgccatcagatcaagtatctcacactatctcttcaattcacttgttgacagtgtttacctttttcagggggtatcgagagacatgcttttccaactggtcgcagagatgaaggccgagtattttcctccgaaagaagatgtcatcttgcagaatgaagcgcccactgacatgtatatagtggttactggttctctggaacttatattccaaaagaatggagtagaactggcaagtttaatctttaatgcctttttcatcacgccacaactgttcacagttcggacgaagggactctgtcagctgctgcgtttgaataggacagctttcttgaatattgttcaggcaaatgttggagatgggacaattatcatgagcaattttcttcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ion_trans KHA cNMP_binding

Protein Analysis

156

Amino Acids

17.67

Weight (kDa)

5.53

Isoelectric Point (pI)

37.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25600 AT4G32500
fragaria_vesca	FvH4_2g29700 FvH4_2g29700 FvH4_2g29700
malus_domestica	MD08G1142800.v1.1 MD15G1119300.v1.1
prunus_persica	Prupe.1G472600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0298701
rosa_laevigata	RLG00000011492
rosa_multiflora	Rmu_co8298943.1_g000001 Rmu_sc0008099.1_g000002 Rmu_sc0008142.1_g000002 Rmu_sc0032030.1_g000001
rosa_roxburghii	Rroxscaffold_7G00169400
rosa_rugosa	Rorug06G0282700
rosa_samantha	Rh6AG393800 Rh6BG401600 Rh6CG407500 Rh6DG394100
rosa_wichuraiana	Rw6G034430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	9
AcuI	CTGAAG	1 cut(s)	449
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	145
AflIII	ACRYGT	1 cut(s)	249
AgsI	TTSAA	4 cut(s)	22, 115, 394, 412
AloI	GAACNNNNNNTCC	2 cut(s)	270, 302
AluBI	AGCT	2 cut(s)	382, 404
AluI	AGCT	2 cut(s)	382, 404
Alw26I	GTCTC	2 cut(s)	53, 153
AlwNI	CAGNNNCTG	1 cut(s)	385
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	4 cut(s)	49, 52, 382, 385
Asp700I	GAANNNNTTC	1 cut(s)	34
AspLEI	GCGC	2 cut(s)	10, 241
BbvI	GCAGC	4 cut(s)	61, 64, 369, 372
BccI	CCATC	2 cut(s)	92, 431
BcgI	CGANNNNNNTGC	2 cut(s)	145, 179
BcoDI	GTCTC	2 cut(s)	53, 153
BfmI	CTRYAG	1 cut(s)	47
BfoI	RGCGCY	1 cut(s)	242
BisI	GCNGC	4 cut(s)	50, 53, 383, 386
BlsI	GCNGC	4 cut(s)	51, 54, 384, 387
BmsI	GCATC	1 cut(s)	58
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse1I	ACTGG	3 cut(s)	180, 271, 312
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseNI	ACTGG	3 cut(s)	180, 271, 312
BseXI	GCAGC	4 cut(s)	61, 64, 369, 372
BshFI	GGCC	1 cut(s)	194
BslFI	GGGAC	2 cut(s)	384, 454
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmAI	GTCTC	2 cut(s)	53, 153
BsmFI	GGGAC	2 cut(s)	384, 454
BsnI	GGCC	1 cut(s)	194
Bsp143I	GATC	1 cut(s)	89
BspANI	GGCC	1 cut(s)	194
BspHI	TCATGA	1 cut(s)	450
BspMAI	CTGCAG	1 cut(s)	51
BsrI	ACTGG	3 cut(s)	180, 271, 312
BssMI	GATC	1 cut(s)	89
Bst4CI	ACNGT	3 cut(s)	131, 351, 358
Bst6I	CTCTTC	1 cut(s)	116
BstC8I	GCNNGC	1 cut(s)	6
BstENI	CCTNNNNNAGG	1 cut(s)	143
BstH2I	RGCGCY	1 cut(s)	242
BstHHI	GCGC	2 cut(s)	10, 241
BstKTI	GATC	1 cut(s)	92
BstMAI	GTCTC	2 cut(s)	53, 153
BstMBI	GATC	1 cut(s)	89
BstNSI	RCATGY	2 cut(s)	166, 253
BstSFI	CTRYAG	1 cut(s)	47
BstV1I	GCAGC	4 cut(s)	61, 64, 369, 372
BstXI	CCANNNNNNTGG	1 cut(s)	296
BsuRI	GGCC	1 cut(s)	194
BtsIMutI	CAGTG	2 cut(s)	136, 243
Cac8I	GCNNGC	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	385
CciI	TCATGA	1 cut(s)	450
CfoI	GCGC	2 cut(s)	10, 241
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	3 cut(s)	163, 250, 451
CviJI	RGCY	3 cut(s)	194, 382, 404
CviKI_1	RGCY	3 cut(s)	194, 382, 404
CviQI	GTAC	1 cut(s)	25
DpnI	GATC	1 cut(s)	91
DpnII	GATC	1 cut(s)	89
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Eco57I	CTGAAG	1 cut(s)	449
EcoNI	CCTNNNNNAGG	1 cut(s)	143
FaeI	CATG	3 cut(s)	166, 253, 454
FaiI	YATR	6 cut(s)	164, 251, 255, 257, 284, 452
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FaqI	GGGAC	2 cut(s)	384, 454
FatI	CATG	3 cut(s)	162, 249, 450
Fnu4HI	GCNGC	4 cut(s)	50, 53, 383, 386
Fsp4HI	GCNGC	4 cut(s)	50, 53, 383, 386
FspI	TGCGCA	1 cut(s)	9
GlaI	GCGC	2 cut(s)	9, 240
GluI	GCNGC	4 cut(s)	50, 53, 383, 386
HaeII	RGCGCY	1 cut(s)	242
HaeIII	GGCC	1 cut(s)	194
HhaI	GCGC	2 cut(s)	10, 241
Hin1II	CATG	3 cut(s)	166, 253, 454
Hin6I	GCGC	2 cut(s)	8, 239
HinP1I	GCGC	2 cut(s)	8, 239
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	2 cut(s)	61, 372
Hpy166II	GTNNAC	3 cut(s)	127, 136, 354
Hpy188I	TCNGA	4 cut(s)	40, 89, 210, 363
Hpy188III	TCNNGA	5 cut(s)	65, 156, 275, 409, 451
Hpy8I	GTNNAC	3 cut(s)	127, 136, 354
HpyAV	CCTTC	3 cut(s)	35, 184, 361
HpyCH4III	ACNGT	3 cut(s)	131, 351, 358
HpyCH4V	TGCA	3 cut(s)	49, 71, 229
Hsp92II	CATG	3 cut(s)	166, 253, 454
HspAI	GCGC	2 cut(s)	8, 239
Kzo9I	GATC	1 cut(s)	89
LpnPI	CCDG	6 cut(s)	131, 161, 252, 260, 293, 407
Lsp1109I	GCAGC	4 cut(s)	61, 64, 369, 372
LweI	GCATC	1 cut(s)	58
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	1 cut(s)	91
MboI	GATC	1 cut(s)	89
MboII	GAAGA	3 cut(s)	103, 227, 455
MluCI	AATT	4 cut(s)	34, 115, 444, 457
MlyI	GAGTC	2 cut(s)	55, 366
MmeI	TCCRAC	2 cut(s)	196, 412
MnlI	CCTC	2 cut(s)	87, 216
MroXI	GAANNNNTTC	1 cut(s)	34
MseI	TTAA	2 cut(s)	317, 324
MslI	CAYNNNNRTG	1 cut(s)	248
MspA1I	CMGCKG	1 cut(s)	382
NdeII	GATC	1 cut(s)	89
NlaIII	CATG	3 cut(s)	166, 253, 454
NmeAIII	GCCGAG	1 cut(s)	220
NsbI	TGCGCA	1 cut(s)	9
NspI	RCATGY	2 cut(s)	166, 253
PagI	TCATGA	1 cut(s)	450
PciI	ACATGT	1 cut(s)	249
PdmI	GAANNNNTTC	1 cut(s)	34
PflFI	GACNNNGTC	1 cut(s)	375
PkrI	GCNGC	4 cut(s)	51, 54, 384, 387
PleI	GAGTC	2 cut(s)	55, 366
PpsI	GAGTC	2 cut(s)	55, 366
PscI	ACATGT	1 cut(s)	249
PstI	CTGCAG	1 cut(s)	51
PstNI	CAGNNNCTG	1 cut(s)	385
PsyI	GACNNNGTC	1 cut(s)	375
PvuII	CAGCTG	1 cut(s)	382
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	248
SaqAI	TTAA	2 cut(s)	317, 324
SatI	GCNGC	4 cut(s)	50, 53, 383, 386
Sau3AI	GATC	1 cut(s)	89
SchI	GAGTC	2 cut(s)	55, 366
SetI	ASST	3 cut(s)	141, 384, 406
SfaNI	GCATC	1 cut(s)	58
SfcI	CTRYAG	1 cut(s)	47
SmiMI	CAYNNNNRTG	1 cut(s)	248
Sse9I	AATT	4 cut(s)	34, 115, 444, 457
SspI	AATATT	1 cut(s)	415
TaaI	ACNGT	3 cut(s)	131, 351, 358
TaqI	TCGA	1 cut(s)	155
TasI	AATT	4 cut(s)	34, 115, 444, 457
TatI	WGTACW	1 cut(s)	24
Tru1I	TTAA	2 cut(s)	317, 324
Tru9I	TTAA	2 cut(s)	317, 324
TscAI	CASTG	2 cut(s)	136, 250
TseI	GCWGC	4 cut(s)	49, 52, 382, 385
TspDTI	ATGAA	3 cut(s)	203, 249, 325
TspRI	CASTG	2 cut(s)	136, 250
Tth111I	GACNNNGTC	1 cut(s)	375
XagI	CCTNNNNNAGG	1 cut(s)	143
XceI	RCATGY	2 cut(s)	166, 253
XmnI	GAANNNNTTC	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.