Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032030.1

Orthogroup ID

OG0009795

Physical Location & Seq

Genomic Coordinates Forward (+)

193 .. 2234

Gene Structure 2042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032030.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

atgcttgcgcatttgtgtttgaagtacagaactaattcagaaggactgcagcagcaagagactcttgatgcactccctcacgccatcagatcaagtatctcacactatctcttcaattcacttgttgacagtgtttacctttttcagggggtatcgagagacatgcttttccaactggtcgcagagatgaaggccgagtattttcctccgaaagaagatgtcatcttgcagaatgaagcgcccactgacatgtatatagtggttactggttctctggaacttatattccaaaagaatggagtagaactggcaagtttaatctttaatgcctttttcatcacgccacaactgttcacagttcggacgaagggactctgtcagctgctgcgtttgaataggacagctttcttgaatattgttcaggcaaatgttggagatgggacaattatcatgagcaattttcttcagcatttgagggaaatgaaggatcccataatggaaggaattctaacagatgtagaacatatgctggctaggggaaagatggacatgcctcttagtttagggtttgctgcaaagaggagtgatgatttgttgctacatcaattgctaagacgtggtgcagatccgaatgagacagatcatacaggccggacagctatgcacattgcagcatcaaatggaagtcagcattgtgcgactttacttctagagtatggaggtgatcctaacatcaaagattgtgaagaaaatgttcctctatgggaagcaataatgggcaaacatgaatctttgattaaacttttcttagaaaatggagctgagattagttctggcaatgtgggccactatgcttgtgctgctgttgagcaaaacaacttagagctgctcaaagacattgtccgatatggtggtgatgttacattgcccaagaccgatgggactacagcactccatacagcagtgagtgaaggaaatgctgagatagttaagttcctcttagaacaaggagctgatgctgacaatagggatagctatggatggagtccgagggctttggcagagcatcagggacatgaagaaataatggaactatttcagcacaaatctggagttaagaaaccaactactgttcctctgccaaacgatcctcagctaccacgccttgtgaagttccagagtgagcccattatgccaccctatgtccgggatggcaggccaaactcagaaacacggtggttggatgatactcggataagaaggttcaacaactttcccaattcgctttttgggatcatgtcagctgccaataccggtgattatattactcacttcctgtcgattccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ion_trans KHA cNMP_binding

Protein Analysis

449

Amino Acids

50.23

Weight (kDa)

5.45

Isoelectric Point (pI)

42.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25600 AT4G32500
fragaria_vesca	FvH4_2g29700 FvH4_2g29700 FvH4_2g29700
malus_domestica	MD08G1142800.v1.1 MD15G1119300.v1.1
prunus_persica	Prupe.1G472600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0298701
rosa_laevigata	RLG00000011492
rosa_multiflora	Rmu_co8298943.1_g000001 Rmu_sc0008099.1_g000002 Rmu_sc0008142.1_g000002 Rmu_sc0032030.1_g000001
rosa_roxburghii	Rroxscaffold_7G00169400
rosa_rugosa	Rorug06G0282700
rosa_samantha	Rh6AG393800 Rh6BG401600 Rh6CG407500 Rh6DG394100
rosa_wichuraiana	Rw6G034430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	9
AclWI	GGATC	6 cut(s)	482, 495, 620, 719, 1142, 1301
AcsI	RAATTY	1 cut(s)	504
AcuI	CTGAAG	1 cut(s)	449
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	2 cut(s)	145, 1206
AflIII	ACRYGT	1 cut(s)	249
AgeI	ACCGGT	1 cut(s)	1313
AgsI	TTSAA	5 cut(s)	22, 115, 394, 412, 1267
AjiI	CACGTC	1 cut(s)	617
AloI	GAACNNNNNNTCC	2 cut(s)	270, 302
AluBI	AGCT	9 cut(s)	382, 404, 659, 821, 886, 1013, 1035, 1156, 1304
AluI	AGCT	9 cut(s)	382, 404, 659, 821, 886, 1013, 1035, 1156, 1304
Alw26I	GTCTC	3 cut(s)	53, 153, 629
AlwI	GGATC	6 cut(s)	482, 495, 620, 719, 1142, 1301
AlwNI	CAGNNNCTG	1 cut(s)	385
AoxI	GGCC	4 cut(s)	192, 649, 844, 1217
ApeKI	GCWGC	9 cut(s)	49, 52, 382, 385, 572, 671, 860, 886, 1304
ApoI	RAATTY	1 cut(s)	504
ArsI	GACNNNNNNTTYG	2 cut(s)	885, 917
AsiGI	ACCGGT	1 cut(s)	1313
Asp700I	GAANNNNTTC	4 cut(s)	34, 504, 753, 1095
AspLEI	GCGC	2 cut(s)	10, 241
AspS9I	GGNCC	1 cut(s)	844
AsuC2I	CCSGG	1 cut(s)	1208
AsuHPI	GGTGA	3 cut(s)	734, 926, 1328
BamHI	GGATCC	1 cut(s)	487
BanII	GRGCYC	1 cut(s)	1188
BbvCI	CCTCAGC	1 cut(s)	1152
BbvI	GCAGC	9 cut(s)	61, 64, 369, 372, 559, 683, 847, 873, 1291
BccI	CCATC	6 cut(s)	92, 431, 538, 932, 1035, 1205
BcgI	CGANNNNNNTGC	2 cut(s)	145, 179
BcnI	CCSGG	1 cut(s)	1208
BcoDI	GTCTC	3 cut(s)	53, 153, 629
BfaI	CTAG	2 cut(s)	534, 710
BfmI	CTRYAG	2 cut(s)	47, 945
BfoI	RGCGCY	1 cut(s)	242
BisI	GCNGC	9 cut(s)	50, 53, 383, 386, 573, 672, 861, 887, 1305
BlsI	GCNGC	9 cut(s)	51, 54, 384, 387, 574, 673, 862, 888, 1306
Bme1390I	CCNGG	1 cut(s)	1208
BmgBI	CACGTC	1 cut(s)	617
BmgT120I	GGNCC	1 cut(s)	844
BmiI	GGNNCC	1 cut(s)	489
BmrFI	CCNGG	1 cut(s)	1208
BmsI	GCATC	4 cut(s)	58, 683, 1006, 1075
BpmI	CTGGAG	1 cut(s)	1131
Bpu10I	CCTNAGC	1 cut(s)	1152
BpuMI	CCSGG	1 cut(s)	1208
BsaJI	CCNNGG	1 cut(s)	1049
BsaWI	WCCGGW	1 cut(s)	1313
Bsc4I	CCNNNNNNNGG	2 cut(s)	145, 1206
Bse118I	RCCGGY	1 cut(s)	1313
Bse1I	ACTGG	3 cut(s)	180, 271, 312
Bse3DI	GCAATG	3 cut(s)	666, 844, 923
BseDI	CCNNGG	1 cut(s)	1049
BseGI	GGATG	3 cut(s)	1046, 1216, 1249
BseLI	CCNNNNNNNGG	2 cut(s)	145, 1206
BseMI	GCAATG	3 cut(s)	666, 844, 923
BseMII	CTCAG	4 cut(s)	813, 972, 1166, 1239
BseNI	ACTGG	3 cut(s)	180, 271, 312
BseRI	GAGGAG	1 cut(s)	595
BseXI	GCAGC	9 cut(s)	61, 64, 369, 372, 559, 683, 847, 873, 1291
BsgI	GTGCAG	1 cut(s)	642
BshFI	GGCC	4 cut(s)	194, 651, 846, 1219
BshTI	ACCGGT	1 cut(s)	1313
BsiSI	CCGG	3 cut(s)	652, 1207, 1314
BslFI	GGGAC	4 cut(s)	384, 454, 955, 1086
BslI	CCNNNNNNNGG	2 cut(s)	145, 1206
BsmAI	GTCTC	3 cut(s)	53, 153, 629
BsmFI	GGGAC	4 cut(s)	384, 454, 955, 1086
BsnI	GGCC	4 cut(s)	194, 651, 846, 1219
Bsp1286I	GDGCHC	1 cut(s)	1188
Bsp143I	GATC	7 cut(s)	89, 487, 625, 640, 724, 1147, 1293
BspANI	GGCC	4 cut(s)	194, 651, 846, 1219
BspCNI	CTCAG	4 cut(s)	814, 973, 1165, 1238
BspHI	TCATGA	1 cut(s)	450
BspLI	GGNNCC	1 cut(s)	489
BspMAI	CTGCAG	1 cut(s)	51
BspPI	GGATC	6 cut(s)	482, 495, 620, 719, 1142, 1301
BsrDI	GCAATG	3 cut(s)	666, 844, 923
BsrFI	RCCGGY	1 cut(s)	1313
BsrI	ACTGG	3 cut(s)	180, 271, 312
BssAI	RCCGGY	1 cut(s)	1313
BssECI	CCNNGG	1 cut(s)	1049
BssMI	GATC	7 cut(s)	89, 487, 625, 640, 724, 1147, 1293
Bst4CI	ACNGT	5 cut(s)	131, 351, 358, 1132, 1236
Bst6I	CTCTTC	1 cut(s)	116
BstC8I	GCNNGC	3 cut(s)	6, 531, 1217
BstENI	CCTNNNNNAGG	1 cut(s)	143
BstF5I	GGATG	3 cut(s)	1046, 1216, 1249
BstH2I	RGCGCY	1 cut(s)	242
BstHHI	GCGC	2 cut(s)	10, 241
BstKTI	GATC	7 cut(s)	92, 490, 628, 643, 727, 1150, 1296
BstMAI	GTCTC	3 cut(s)	53, 153, 629
BstMBI	GATC	7 cut(s)	89, 487, 625, 640, 724, 1147, 1293
BstMWI	GCNNNNNNNGC	3 cut(s)	843, 860, 1192
BstNSI	RCATGY	3 cut(s)	166, 253, 553
BstSCI	CCNGG	1 cut(s)	1206
BstSFI	CTRYAG	2 cut(s)	47, 945
BstV1I	GCAGC	9 cut(s)	61, 64, 369, 372, 559, 683, 847, 873, 1291
BstX2I	RGATCY	2 cut(s)	487, 625
BstXI	CCANNNNNNTGG	1 cut(s)	296
BstYI	RGATCY	2 cut(s)	487, 625
BsuRI	GGCC	4 cut(s)	194, 651, 846, 1219
BtrI	CACGTC	1 cut(s)	617
BtsCI	GGATG	3 cut(s)	1046, 1216, 1249
BtsI	GCAGTG	1 cut(s)	969
BtsIMutI	CAGTG	3 cut(s)	136, 243, 969
Cac8I	GCNNGC	3 cut(s)	6, 531, 1217
CaiI	CAGNNNCTG	1 cut(s)	385
CciI	TCATGA	1 cut(s)	450
CfoI	GCGC	2 cut(s)	10, 241
Cfr10I	RCCGGY	1 cut(s)	1313
Cfr13I	GGNCC	1 cut(s)	844
Csp6I	GTAC	1 cut(s)	25
CspAI	ACCGGT	1 cut(s)	1313
CspCI	CAANNNNNGTGG	2 cut(s)	836, 871
CviAII	CATG	7 cut(s)	163, 250, 451, 550, 785, 1076, 1297
CviQI	GTAC	1 cut(s)	25
DpnI	GATC	7 cut(s)	91, 489, 627, 642, 726, 1149, 1295
DpnII	GATC	7 cut(s)	89, 487, 625, 640, 724, 1147, 1293
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Eco24I	GRGCYC	1 cut(s)	1188
Eco57I	CTGAAG	1 cut(s)	449
EcoNI	CCTNNNNNAGG	1 cut(s)	143
EcoRI	GAATTC	1 cut(s)	504
EcoT38I	GRGCYC	1 cut(s)	1188
FaeI	CATG	7 cut(s)	166, 253, 454, 553, 788, 1079, 1300
FalI	AAGNNNNNCTT	4 cut(s)	48, 80, 983, 1015
FaqI	GGGAC	4 cut(s)	384, 454, 955, 1086
FatI	CATG	7 cut(s)	162, 249, 450, 549, 784, 1075, 1296
FauNDI	CATATG	1 cut(s)	525
Fnu4HI	GCNGC	9 cut(s)	50, 53, 383, 386, 573, 672, 861, 887, 1305
FokI	GGATG	3 cut(s)	1053, 1223, 1256
FriOI	GRGCYC	1 cut(s)	1188
Fsp4HI	GCNGC	9 cut(s)	50, 53, 383, 386, 573, 672, 861, 887, 1305
FspBI	CTAG	2 cut(s)	534, 710
FspI	TGCGCA	1 cut(s)	9
GlaI	GCGC	2 cut(s)	9, 240
GluI	GCNGC	9 cut(s)	50, 53, 383, 386, 573, 672, 861, 887, 1305
GsuI	CTGGAG	1 cut(s)	1131
HaeII	RGCGCY	1 cut(s)	242
HaeIII	GGCC	4 cut(s)	194, 651, 846, 1219
HapII	CCGG	3 cut(s)	652, 1207, 1314
HhaI	GCGC	2 cut(s)	10, 241
Hin1II	CATG	7 cut(s)	166, 253, 454, 553, 788, 1079, 1300
Hin6I	GCGC	2 cut(s)	8, 239
HinP1I	GCGC	2 cut(s)	8, 239
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	5 cut(s)	61, 372, 788, 1045, 1342
HpaII	CCGG	3 cut(s)	652, 1207, 1314
HphI	GGTGA	3 cut(s)	734, 926, 1328
Hpy166II	GTNNAC	3 cut(s)	127, 136, 354
Hpy188I	TCNGA	9 cut(s)	40, 89, 210, 363, 630, 905, 1050, 1228, 1254
Hpy188III	TCNNGA	8 cut(s)	65, 156, 275, 409, 451, 710, 1110, 1177
Hpy8I	GTNNAC	3 cut(s)	127, 136, 354
HpyAV	CCTTC	7 cut(s)	35, 184, 361, 478, 494, 965, 1254
HpyCH4III	ACNGT	5 cut(s)	131, 351, 358, 1132, 1236
HpyCH4IV	ACGT	1 cut(s)	616
HpyCH4V	TGCA	7 cut(s)	49, 71, 229, 575, 623, 664, 671
HpyF10VI	GCNNNNNNNGC	3 cut(s)	843, 860, 1192
HpySE526I	ACGT	1 cut(s)	616
Hsp92II	CATG	7 cut(s)	166, 253, 454, 553, 788, 1079, 1300
HspAI	GCGC	2 cut(s)	8, 239
Kzo9I	GATC	7 cut(s)	89, 487, 625, 640, 724, 1147, 1293
LmnI	GCTCC	2 cut(s)	818, 1010
Lsp1109I	GCAGC	9 cut(s)	61, 64, 369, 372, 559, 683, 847, 873, 1291
LweI	GCATC	4 cut(s)	58, 683, 1006, 1075
MaeI	CTAG	2 cut(s)	534, 710
MaeII	ACGT	1 cut(s)	616
MaeIII	GTNAC	2 cut(s)	262, 919
MalI	GATC	7 cut(s)	91, 489, 627, 642, 726, 1149, 1295
MboI	GATC	7 cut(s)	89, 487, 625, 640, 724, 1147, 1293
MboII	GAAGA	5 cut(s)	103, 227, 455, 758, 1091
MfeI	CAATTG	1 cut(s)	605
MflI	RGATCY	2 cut(s)	487, 625
MhlI	GDGCHC	1 cut(s)	1188
MluCI	AATT	7 cut(s)	34, 115, 444, 457, 504, 605, 1279
MlyI	GAGTC	3 cut(s)	55, 366, 1054
MmeI	TCCRAC	3 cut(s)	196, 412, 1221
MroXI	GAANNNNTTC	4 cut(s)	34, 504, 753, 1095
MseI	TTAA	5 cut(s)	317, 324, 798, 990, 1116
MslI	CAYNNNNRTG	1 cut(s)	248
MspA1I	CMGCKG	2 cut(s)	382, 1304
MspI	CCGG	3 cut(s)	652, 1207, 1314
MspR9I	CCNGG	1 cut(s)	1208
MunI	CAATTG	1 cut(s)	605
MwoI	GCNNNNNNNGC	3 cut(s)	843, 860, 1192
NciI	CCSGG	1 cut(s)	1208
NdeI	CATATG	1 cut(s)	525
NdeII	GATC	7 cut(s)	89, 487, 625, 640, 724, 1147, 1293
NlaIII	CATG	7 cut(s)	166, 253, 454, 553, 788, 1079, 1300
NlaIV	GGNNCC	1 cut(s)	489
NmeAIII	GCCGAG	1 cut(s)	220
NsbI	TGCGCA	1 cut(s)	9
NspI	RCATGY	3 cut(s)	166, 253, 553
PagI	TCATGA	1 cut(s)	450
PciI	ACATGT	1 cut(s)	249
PdmI	GAANNNNTTC	4 cut(s)	34, 504, 753, 1095
PfeI	GAWTC	2 cut(s)	788, 1342
PflFI	GACNNNGTC	2 cut(s)	375, 899
PfoI	TCCNGGA	1 cut(s)	1206
PinAI	ACCGGT	1 cut(s)	1313
PkrI	GCNGC	9 cut(s)	51, 54, 384, 387, 574, 673, 862, 888, 1306
PleI	GAGTC	3 cut(s)	55, 366, 1053
PpsI	GAGTC	3 cut(s)	55, 366, 1053
PscI	ACATGT	1 cut(s)	249
PspN4I	GGNNCC	1 cut(s)	489
PspPI	GGNCC	1 cut(s)	844
PstI	CTGCAG	1 cut(s)	51
PstNI	CAGNNNCTG	1 cut(s)	385
PsuI	RGATCY	2 cut(s)	487, 625
PsyI	GACNNNGTC	2 cut(s)	375, 899
PvuII	CAGCTG	2 cut(s)	382, 1304
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	248
SaqAI	TTAA	5 cut(s)	317, 324, 798, 990, 1116
SatI	GCNGC	9 cut(s)	50, 53, 383, 386, 573, 672, 861, 887, 1305
Sau3AI	GATC	7 cut(s)	89, 487, 625, 640, 724, 1147, 1293
Sau96I	GGNCC	1 cut(s)	844
SchI	GAGTC	3 cut(s)	55, 366, 1054
ScrFI	CCNGG	1 cut(s)	1208
SduI	GDGCHC	1 cut(s)	1188
SfaNI	GCATC	4 cut(s)	58, 683, 1006, 1075
SfcI	CTRYAG	2 cut(s)	47, 945
SmiMI	CAYNNNNRTG	1 cut(s)	248
Sse9I	AATT	7 cut(s)	34, 115, 444, 457, 504, 605, 1279
SspI	AATATT	1 cut(s)	415
SspMI	CTAG	2 cut(s)	534, 710
StyD4I	CCNGG	1 cut(s)	1206
TaaI	ACNGT	5 cut(s)	131, 351, 358, 1132, 1236
TaiI	ACGT	1 cut(s)	619
TaqI	TCGA	2 cut(s)	155, 1340
TaqII	GACCGA	1 cut(s)	950
TasI	AATT	7 cut(s)	34, 115, 444, 457, 504, 605, 1279
TatI	WGTACW	1 cut(s)	24
TfiI	GAWTC	2 cut(s)	788, 1342
Tru1I	TTAA	5 cut(s)	317, 324, 798, 990, 1116
Tru9I	TTAA	5 cut(s)	317, 324, 798, 990, 1116
TscAI	CASTG	3 cut(s)	136, 250, 969
TseI	GCWGC	9 cut(s)	49, 52, 382, 385, 572, 671, 860, 886, 1304
TspDTI	ATGAA	6 cut(s)	203, 249, 325, 497, 801, 1092
TspRI	CASTG	3 cut(s)	136, 250, 969
Tth111I	GACNNNGTC	2 cut(s)	375, 899
XagI	CCTNNNNNAGG	1 cut(s)	143
XapI	RAATTY	1 cut(s)	504
XbaI	TCTAGA	1 cut(s)	709
XceI	RCATGY	3 cut(s)	166, 253, 553
XmnI	GAANNNNTTC	4 cut(s)	34, 504, 753, 1095
XspI	CTAG	2 cut(s)	534, 710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.