Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8315197.1

Orthogroup ID

OG0008122

Physical Location & Seq

Genomic Coordinates Forward (+)

75 .. 680

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8315197.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

atggacacaagtaaaggattgttggacgtgggttcttatgattggcgagaggattacgagaacattggtttggagactacttcaccaagatgctatgcagtccccacgacatgccatcttactccactatccggtcctgggtcattggccataacttcttcggcatcattgacaacaagggatttgacaaatgcttcacaagttcagctgcgccctggaagtcactgtctcttgtcaggtagttctcttcattggcgtagttcaccagtcaccccaatgcatcggttcggtgggatgaaatcatttcaaggtattgactctgaaaagggccatcacgacttcctgcaagatgatacacctgagatattgaaggacacttctatccccatcaagtcggtgaaagtgagctccccaaataagaagcgtgtttctcctcctcacagccacaatcatgagcttggtacaagctcttcagggggcttgagaagtggccgcaagttcattctgaaggctgtgccttcttttccacctcttaccccttgtattggttcaaaaggtagtagtaccattcagaacatgaataatcctcttcaagataagggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

TCR

Protein Analysis

201

Amino Acids

21.65

Weight (kDa)

8.93

Isoelectric Point (pI)

55.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008122)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29570 FvH4_2g29570 FvH4_2g29570
malus_domestica	MD08G1145800.v1.1 MD15G1121200.v1.1
prunus_persica	Prupe.1G473800_v2.0.a1 Prupe.1G473800_v2.0.a1 Prupe.1G473800_v2.0.a1
pyrus_communis	pycom08g12270 pycom15g10940
rosa_chinensis	RchiOBHm_Chr6g0298531
rosa_multiflora	Rmu_co8315197.1_g000001 Rmu_co8448729.1_g000001 Rmu_sc0004500.1_g000005 Rmu_ssc0000289.1_g000056
rosa_roxburghii	Rroxscaffold_7G00169560
rosa_rugosa	Rorug06G0281000 Rorug06G0281000
rosa_samantha	Rh6AG392300 Rh6BG400100 Rh6CG406000 Rh6DG392400 Rh6DG392500
rosa_wichuraiana	Rw6G034290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	493
AcoI	YGGCCR	2 cut(s)	147, 490
AcuI	CTGAAG	2 cut(s)	456, 527
AfaI	GTAC	2 cut(s)	463, 565
AfiI	CCNNNNNNNGG	3 cut(s)	131, 138, 545
AgsI	TTSAA	4 cut(s)	308, 370, 552, 593
AjiI	CACGTC	1 cut(s)	28
AjnI	CCWGG	2 cut(s)	136, 214
AjuI	GAANNNNNNNTTGG	2 cut(s)	53, 85
AluBI	AGCT	4 cut(s)	208, 408, 457, 468
AluI	AGCT	4 cut(s)	208, 408, 457, 468
Alw21I	GWGCWC	1 cut(s)	410
Alw26I	GTCTC	2 cut(s)	68, 233
AoxI	GGCC	3 cut(s)	147, 328, 490
ApeKI	GCWGC	1 cut(s)	208
AspLEI	GCGC	1 cut(s)	213
AspS9I	GGNCC	2 cut(s)	134, 328
AsuHPI	GGTGA	4 cut(s)	75, 255, 262, 409
AvaII	GGWCC	1 cut(s)	134
BalI	TGGCCA	1 cut(s)	149
BanII	GRGCYC	1 cut(s)	410
BarI	GAAGNNNNNNTAC	2 cut(s)	454, 486
Bbv12I	GWGCWC	1 cut(s)	410
BbvI	GCAGC	1 cut(s)	195
BccI	CCATC	3 cut(s)	123, 339, 395
BciT130I	CCWGG	2 cut(s)	138, 216
BcoDI	GTCTC	2 cut(s)	68, 233
BisI	GCNGC	2 cut(s)	209, 493
BlsI	GCNGC	2 cut(s)	210, 494
Bme1390I	CCNGG	2 cut(s)	138, 216
Bme18I	GGWCC	1 cut(s)	134
BmgBI	CACGTC	1 cut(s)	28
BmgT120I	GGNCC	2 cut(s)	134, 328
BmrFI	CCNGG	2 cut(s)	138, 216
BmsI	GCATC	3 cut(s)	80, 173, 289
BpuEI	CTTGAG	1 cut(s)	502
BsaJI	CCNNGG	2 cut(s)	137, 214
BsaWI	WCCGGW	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	3 cut(s)	131, 138, 545
Bse1I	ACTGG	1 cut(s)	266
BseBI	CCWGG	2 cut(s)	138, 216
BseDI	CCNNGG	2 cut(s)	137, 214
BseGI	GGATG	1 cut(s)	300
BseLI	CCNNNNNNNGG	3 cut(s)	131, 138, 545
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	1 cut(s)	266
BseRI	GAGGAG	2 cut(s)	423, 426
BseXI	GCAGC	1 cut(s)	195
BshFI	GGCC	3 cut(s)	149, 330, 492
BsiHKAI	GWGCWC	1 cut(s)	410
BsiSI	CCGG	1 cut(s)	132
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	3 cut(s)	131, 138, 545
BsmAI	GTCTC	2 cut(s)	68, 233
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	3 cut(s)	149, 330, 492
Bsp1286I	GDGCHC	1 cut(s)	410
BspACI	CCGC	1 cut(s)	493
BspANI	GGCC	3 cut(s)	149, 330, 492
BspCNI	CTCAG	1 cut(s)	352
BspHI	TCATGA	1 cut(s)	451
BspQI	GCTCTTC	1 cut(s)	475
BsrI	ACTGG	1 cut(s)	266
BssECI	CCNNGG	2 cut(s)	137, 214
Bst2UI	CCWGG	2 cut(s)	138, 216
Bst4CI	ACNGT	1 cut(s)	227
Bst6I	CTCTTC	3 cut(s)	252, 475, 594
BstDEI	CTNAG	1 cut(s)	360
BstF5I	GGATG	1 cut(s)	300
BstHHI	GCGC	1 cut(s)	213
BstMAI	GTCTC	2 cut(s)	68, 233
BstNI	CCWGG	2 cut(s)	138, 216
BstNSI	RCATGY	1 cut(s)	114
BstSCI	CCNGG	2 cut(s)	136, 214
BstV1I	GCAGC	1 cut(s)	195
BsuRI	GGCC	3 cut(s)	149, 330, 492
BtrI	CACGTC	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	300
BtsIMutI	CAGTG	1 cut(s)	223
CciI	TCATGA	1 cut(s)	451
CfoI	GCGC	1 cut(s)	213
Cfr13I	GGNCC	2 cut(s)	134, 328
Csp6I	GTAC	2 cut(s)	462, 564
CviAII	CATG	3 cut(s)	111, 452, 577
CviQI	GTAC	2 cut(s)	462, 564
DdeI	CTNAG	1 cut(s)	360
EaeI	YGGCCR	2 cut(s)	147, 490
Eam1104I	CTCTTC	3 cut(s)	252, 475, 594
EarI	CTCTTC	3 cut(s)	252, 475, 594
Ecl136II	GAGCTC	1 cut(s)	408
Eco24I	GRGCYC	1 cut(s)	410
Eco47I	GGWCC	1 cut(s)	134
Eco53kI	GAGCTC	1 cut(s)	408
Eco57I	CTGAAG	2 cut(s)	456, 527
EcoICRI	GAGCTC	1 cut(s)	408
EcoRII	CCWGG	2 cut(s)	136, 214
EcoT22I	ATGCAT	1 cut(s)	282
EcoT38I	GRGCYC	1 cut(s)	410
FaeI	CATG	3 cut(s)	114, 455, 580
FaiI	YATR	6 cut(s)	39, 96, 112, 152, 453, 578
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	3 cut(s)	110, 451, 576
Fnu4HI	GCNGC	2 cut(s)	209, 493
FokI	GGATG	1 cut(s)	307
FriOI	GRGCYC	1 cut(s)	410
Fsp4HI	GCNGC	2 cut(s)	209, 493
GlaI	GCGC	1 cut(s)	212
GluI	GCNGC	2 cut(s)	209, 493
HaeIII	GGCC	3 cut(s)	149, 330, 492
HapII	CCGG	1 cut(s)	132
HhaI	GCGC	1 cut(s)	213
Hin1II	CATG	3 cut(s)	114, 455, 580
Hin6I	GCGC	1 cut(s)	211
HinP1I	GCGC	1 cut(s)	211
HinfI	GANTC	1 cut(s)	317
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	4 cut(s)	75, 255, 262, 409
Hpy166II	GTNNAC	1 cut(s)	263
Hpy188I	TCNGA	3 cut(s)	322, 507, 573
Hpy188III	TCNNGA	3 cut(s)	335, 452, 593
Hpy8I	GTNNAC	1 cut(s)	263
HpyAV	CCTTC	3 cut(s)	364, 502, 528
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	3 cut(s)	98, 280, 346
HpyF3I	CTNAG	1 cut(s)	360
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	3 cut(s)	114, 455, 580
HspAI	GCGC	1 cut(s)	211
LguI	GCTCTTC	1 cut(s)	475
LmnI	GCTCC	1 cut(s)	413
Lsp1109I	GCAGC	1 cut(s)	195
LweI	GCATC	3 cut(s)	80, 173, 289
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	2 cut(s)	221, 268
MboII	GAAGA	4 cut(s)	150, 239, 462, 581
MhlI	GDGCHC	1 cut(s)	410
MlsI	TGGCCA	1 cut(s)	149
MluNI	TGGCCA	1 cut(s)	149
MlyI	GAGTC	1 cut(s)	311
MnlI	CCTC	5 cut(s)	43, 444, 447, 540, 597
Mox20I	TGGCCA	1 cut(s)	149
Mph1103I	ATGCAT	1 cut(s)	282
MscI	TGGCCA	1 cut(s)	149
MslI	CAYNNNNRTG	3 cut(s)	88, 275, 450
Msp20I	TGGCCA	1 cut(s)	149
MspA1I	CMGCKG	1 cut(s)	208
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	2 cut(s)	138, 216
MvaI	CCWGG	2 cut(s)	138, 216
NlaIII	CATG	3 cut(s)	114, 455, 580
NmuCI	GTSAC	2 cut(s)	221, 268
NsiI	ATGCAT	1 cut(s)	282
NspI	RCATGY	1 cut(s)	114
PagI	TCATGA	1 cut(s)	451
PciSI	GCTCTTC	1 cut(s)	475
PkrI	GCNGC	2 cut(s)	210, 494
PleI	GAGTC	1 cut(s)	311
PpsI	GAGTC	1 cut(s)	311
Psp124BI	GAGCTC	1 cut(s)	410
Psp6I	CCWGG	2 cut(s)	136, 214
PspGI	CCWGG	2 cut(s)	136, 214
PspPI	GGNCC	2 cut(s)	134, 328
PvuII	CAGCTG	1 cut(s)	208
RsaI	GTAC	2 cut(s)	463, 565
RsaNI	GTAC	2 cut(s)	462, 564
RseI	CAYNNNNRTG	3 cut(s)	88, 275, 450
SacI	GAGCTC	1 cut(s)	410
SapI	GCTCTTC	1 cut(s)	475
SatI	GCNGC	2 cut(s)	209, 493
Sau96I	GGNCC	2 cut(s)	134, 328
SchI	GAGTC	1 cut(s)	311
ScrFI	CCNGG	2 cut(s)	138, 216
SduI	GDGCHC	1 cut(s)	410
SfaNI	GCATC	3 cut(s)	80, 173, 289
SinI	GGWCC	1 cut(s)	134
SmiMI	CAYNNNNRTG	3 cut(s)	88, 275, 450
SmlI	CTYRAG	1 cut(s)	481
SmoI	CTYRAG	1 cut(s)	481
SsiI	CCGC	1 cut(s)	493
SstI	GAGCTC	1 cut(s)	410
StyD4I	CCNGG	2 cut(s)	136, 214
TaaI	ACNGT	1 cut(s)	227
TaiI	ACGT	1 cut(s)	30
TauI	GCSGC	1 cut(s)	495
TscAI	CASTG	1 cut(s)	230
TseFI	GTSAC	2 cut(s)	221, 268
TseI	GCWGC	1 cut(s)	208
Tsp45I	GTSAC	2 cut(s)	221, 268
TspDTI	ATGAA	4 cut(s)	239, 311, 490, 593
TspRI	CASTG	1 cut(s)	230
VpaK11BI	GGWCC	1 cut(s)	134
XceI	RCATGY	1 cut(s)	114
Zsp2I	ATGCAT	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.