Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000289.1

Orthogroup ID

OG0008122

Physical Location & Seq

Genomic Coordinates Forward (+)

295801 .. 298424

Gene Structure 2624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000289.1_g000056.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1373 bp

atggattctcctgatttcaccaaagccacagcctcaccctcatccgactctcctccagttcaagagtcgcctgtttttagttttatcaacaatctgtccccaataaagactgtgaaggctacacatgtagcaccagcgttccccggacttagctctcctcctcttgtgtttacatcaccacgagtaaatccatacactgagacgagtttcctaaagaggcggtctcaacactcagaattatccggtgcaggaatacctaaaactcatgatgaaggcaaggagtttgctgatagtgcagtggaccctgtgaaacctttgacacaattgcagttgggcttgattactgacactagagactgcaagaccaaaaattttgtggaaactcatccctgtagctcctcagggtttgtagatgaatacttggctgattccactgaggtggactgtgtgaattctgatcaatcagtcaatccacatttggaacattctagcagtgtgctggagccatcaagaagtggcttaatcaagtccaaggaactcacattaacacttggcaacaaaaatgataatgcaaccaactcaagaacggaagctcaggcaccttttatgacatcggagcaggctcacgagtacaatcaaggaaagcaaacatttattgcaaagttgacaaggagtgaaaagcaaaggaatgatgaattacgatttaacgaatgcacaaatatcgaatctgctttatccgttgacaatgctttcaggagagaatatcaccaagaatttcttgatcggggtctaagaggtgaacatcaggatgattatgattactgccctcaatctctagctggagctttgcataatggtcaggtgtatgaagatgcgaatgctggttcaattccaaatagacgaattgaaaacgctgtaatgcatgcttctaagaataattgtaagatcaataaggcaaggaataaccaatgtgacatgcagagacgttgccttcggtttgaagaggctcctccttgtactagtggcaaaggggacggttctttgagtctttcagagaaggttagcaattcaggaccacctaccagcactgtagaaacagagatggtggaatcaccttatgtggacttaataacttctacgaagacacagacggcagcctcattgccacctcggagtactggaaaatctcgtttaactgtttctaagccatctggtattggcttgcatttaaacagtattgtcaatgctgcatcagtggttcgtggtgcaacaagcataaaattagcagaccactacatgggtgtgcaagttatgaactcagcatctattaatgtaaggcgctgtcctaattcattgaatgtggttgagaaaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

TCR

Protein Analysis

457

Amino Acids

49.91

Weight (kDa)

6.25

Isoelectric Point (pI)

55.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008122)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29570 FvH4_2g29570 FvH4_2g29570
malus_domestica	MD08G1145800.v1.1 MD15G1121200.v1.1
prunus_persica	Prupe.1G473800_v2.0.a1 Prupe.1G473800_v2.0.a1 Prupe.1G473800_v2.0.a1
pyrus_communis	pycom08g12270 pycom15g10940
rosa_chinensis	RchiOBHm_Chr6g0298531
rosa_multiflora	Rmu_co8315197.1_g000001 Rmu_co8448729.1_g000001 Rmu_sc0004500.1_g000005 Rmu_ssc0000289.1_g000056
rosa_roxburghii	Rroxscaffold_7G00169560
rosa_rugosa	Rorug06G0281000 Rorug06G0281000
rosa_samantha	Rh6AG392300 Rh6BG400100 Rh6CG406000 Rh6DG392400 Rh6DG392500
rosa_wichuraiana	Rw6G034290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	598
AccB7I	CCANNNNNTGG	1 cut(s)	1297
AciI	CCGC	1 cut(s)	220
AcsI	RAATTY	3 cut(s)	370, 451, 773
AfaI	GTAC	3 cut(s)	632, 1018, 1177
AfiI	CCNNNNNNNGG	1 cut(s)	1297
AflIII	ACRYGT	1 cut(s)	124
AgsI	TTSAA	5 cut(s)	62, 888, 908, 1001, 1357
AhlI	ACTAGT	1 cut(s)	1019
AleI	CACNNNNGTG	1 cut(s)	437
AluBI	AGCT	5 cut(s)	153, 396, 593, 839, 845
AluI	AGCT	5 cut(s)	153, 396, 593, 839, 845
Alw26I	GTCTC	4 cut(s)	194, 228, 348, 976
ApeKI	GCWGC	2 cut(s)	1154, 1247
ApoI	RAATTY	3 cut(s)	370, 451, 773
ArsI	GACNNNNNNTTYG	2 cut(s)	975, 1007
AseI	ATTAAT	1 cut(s)	1329
AspLEI	GCGC	1 cut(s)	1341
AspS9I	GGNCC	2 cut(s)	301, 1073
AsuC2I	CCSGG	1 cut(s)	144
AsuHPI	GGTGA	6 cut(s)	10, 27, 168, 758, 809, 1104
AvaII	GGWCC	2 cut(s)	301, 1073
AxyI	CCTNAGG	1 cut(s)	400
BanI	GGYRCC	1 cut(s)	598
BauI	CACGAG	2 cut(s)	180, 626
BbsI	GAAGAC	1 cut(s)	1148
BbvI	GCAGC	2 cut(s)	1166, 1234
BccI	CCATC	3 cut(s)	514, 1096, 1216
BceAI	ACGGC	1 cut(s)	1167
BcgI	CGANNNNNNTGC	2 cut(s)	703, 737
BclI	TGATCA	1 cut(s)	457
BcnI	CCSGG	1 cut(s)	144
BcoDI	GTCTC	4 cut(s)	194, 228, 348, 976
BcuI	ACTAGT	1 cut(s)	1019
BfaI	CTAG	4 cut(s)	351, 489, 836, 1020
BfmI	CTRYAG	2 cut(s)	391, 1089
BfoI	RGCGCY	1 cut(s)	1342
BisI	GCNGC	2 cut(s)	1155, 1248
BlsI	GCNGC	2 cut(s)	1156, 1249
BmcAI	AGTACT	1 cut(s)	1177
Bme1390I	CCNGG	1 cut(s)	144
Bme18I	GGWCC	2 cut(s)	301, 1073
BmgT120I	GGNCC	2 cut(s)	301, 1073
BmiI	GGNNCC	4 cut(s)	303, 504, 600, 1008
BmrFI	CCNGG	1 cut(s)	144
BmsI	GCATC	3 cut(s)	862, 1259, 1331
BpiI	GAAGAC	1 cut(s)	1148
BplI	GAGNNNNNCTC	2 cut(s)	208, 240
BpmI	CTGGAG	3 cut(s)	39, 521, 861
Bpu10I	CCTNAGC	1 cut(s)	594
BpuEI	CTTGAG	1 cut(s)	565
BpuMI	CCSGG	1 cut(s)	144
BsaI	GGTCTC	1 cut(s)	228
BsaJI	CCNNGG	3 cut(s)	142, 531, 1169
BsaWI	WCCGGW	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	1 cut(s)	1297
Bse1I	ACTGG	2 cut(s)	56, 1183
Bse21I	CCTNAGG	1 cut(s)	400
Bse3DI	GCAATG	1 cut(s)	1160
BseDI	CCNNGG	3 cut(s)	142, 531, 1169
BseGI	GGATG	3 cut(s)	41, 385, 814
BseLI	CCNNNNNNNGG	1 cut(s)	1297
BseMI	GCAATG	1 cut(s)	1160
BseMII	CTCAG	6 cut(s)	189, 246, 414, 426, 608, 1332
BseNI	ACTGG	2 cut(s)	56, 1183
BseRI	GAGGAG	5 cut(s)	42, 147, 150, 388, 999
BseXI	GCAGC	2 cut(s)	1166, 1234
BsgI	GTGCAG	2 cut(s)	267, 315
BshNI	GGYRCC	1 cut(s)	598
BsiSI	CCGG	2 cut(s)	144, 243
BslFI	GGGAC	2 cut(s)	82, 1046
BslI	CCNNNNNNNGG	1 cut(s)	1297
BsmAI	GTCTC	4 cut(s)	194, 228, 348, 976
BsmBI	CGTCTC	2 cut(s)	194, 976
BsmFI	GGGAC	2 cut(s)	82, 1046
BsmI	GAATGC	2 cut(s)	716, 883
Bso31I	GGTCTC	1 cut(s)	228
Bsp143I	GATC	3 cut(s)	457, 781, 945
BspACI	CCGC	1 cut(s)	220
BspCNI	CTCAG	6 cut(s)	190, 245, 413, 427, 607, 1331
BspHI	TCATGA	1 cut(s)	265
BspLI	GGNNCC	4 cut(s)	303, 504, 600, 1008
BspT107I	GGYRCC	1 cut(s)	598
BspTNI	GGTCTC	1 cut(s)	228
BsrDI	GCAATG	1 cut(s)	1160
BsrI	ACTGG	2 cut(s)	56, 1183
BssECI	CCNNGG	3 cut(s)	142, 531, 1169
BssMI	GATC	3 cut(s)	457, 781, 945
BssSI	CACGAG	2 cut(s)	180, 626
BssT1I	CCWWGG	1 cut(s)	531
Bst2BI	CACGAG	2 cut(s)	180, 626
Bst4CI	ACNGT	6 cut(s)	112, 446, 1037, 1090, 1198, 1235
Bst6I	CTCTTC	1 cut(s)	996
BstC8I	GCNNGC	3 cut(s)	621, 924, 1223
BstF5I	GGATG	3 cut(s)	41, 385, 814
BstH2I	RGCGCY	1 cut(s)	1342
BstHHI	GCGC	1 cut(s)	1341
BstKTI	GATC	3 cut(s)	460, 784, 948
BstMAI	GTCTC	4 cut(s)	194, 228, 348, 976
BstMBI	GATC	3 cut(s)	457, 781, 945
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstNSI	RCATGY	3 cut(s)	128, 926, 979
BstSCI	CCNGG	1 cut(s)	142
BstSFI	CTRYAG	2 cut(s)	391, 1089
BstV1I	GCAGC	2 cut(s)	1166, 1234
BstV2I	GAAGAC	1 cut(s)	1148
BstXI	CCANNNNNNTGG	1 cut(s)	439
Bsu36I	CCTNAGG	1 cut(s)	400
BtsCI	GGATG	3 cut(s)	41, 385, 814
BtsI	GCAGTG	2 cut(s)	303, 499
BtsIMutI	CAGTG	6 cut(s)	195, 303, 432, 499, 1086, 1260
Cac8I	GCNNGC	3 cut(s)	621, 924, 1223
CciI	TCATGA	1 cut(s)	265
CfoI	GCGC	1 cut(s)	1341
Cfr13I	GGNCC	2 cut(s)	301, 1073
Csp6I	GTAC	3 cut(s)	631, 1017, 1176
CviAII	CATG	5 cut(s)	125, 266, 923, 976, 1297
CviQI	GTAC	3 cut(s)	631, 1017, 1176
DpnI	GATC	3 cut(s)	459, 783, 947
DpnII	GATC	3 cut(s)	457, 781, 945
DraI	TTTAAA	1 cut(s)	1230
Eam1104I	CTCTTC	1 cut(s)	996
EarI	CTCTTC	1 cut(s)	996
Eco130I	CCWWGG	1 cut(s)	531
Eco31I	GGTCTC	1 cut(s)	228
Eco47I	GGWCC	2 cut(s)	301, 1073
Eco81I	CCTNAGG	1 cut(s)	400
EcoRI	GAATTC	1 cut(s)	451
EcoT14I	CCWWGG	1 cut(s)	531
EcoT22I	ATGCAT	1 cut(s)	924
ErhI	CCWWGG	1 cut(s)	531
Esp3I	CGTCTC	2 cut(s)	194, 976
FaeI	CATG	5 cut(s)	128, 269, 926, 979, 1300
FalI	AAGNNNNNCTT	2 cut(s)	762, 794
FaqI	GGGAC	2 cut(s)	82, 1046
FatI	CATG	5 cut(s)	124, 265, 922, 975, 1296
FbaI	TGATCA	1 cut(s)	457
Fnu4HI	GCNGC	2 cut(s)	1155, 1248
FokI	GGATG	3 cut(s)	28, 372, 821
Fsp4HI	GCNGC	2 cut(s)	1155, 1248
FspBI	CTAG	4 cut(s)	351, 489, 836, 1020
GlaI	GCGC	1 cut(s)	1340
GluI	GCNGC	2 cut(s)	1155, 1248
GsuI	CTGGAG	3 cut(s)	39, 521, 861
HaeII	RGCGCY	1 cut(s)	1342
HapII	CCGG	2 cut(s)	144, 243
HhaI	GCGC	1 cut(s)	1341
Hin1II	CATG	5 cut(s)	128, 269, 926, 979, 1300
Hin6I	GCGC	1 cut(s)	1339
HinP1I	GCGC	1 cut(s)	1339
HincII	GTYRAC	2 cut(s)	666, 742
HindII	GTYRAC	2 cut(s)	666, 742
HinfI	GANTC	7 cut(s)	5, 47, 65, 428, 725, 1045, 1109
HpaII	CCGG	2 cut(s)	144, 243
HphI	GGTGA	6 cut(s)	10, 27, 168, 758, 809, 1104
Hpy166II	GTNNAC	7 cut(s)	171, 301, 442, 666, 742, 800, 1123
Hpy188I	TCNGA	6 cut(s)	46, 235, 457, 616, 1054, 1173
Hpy8I	GTNNAC	7 cut(s)	171, 301, 442, 666, 742, 800, 1123
HpyAV	CCTTC	4 cut(s)	109, 266, 1001, 1051
HpyCH4III	ACNGT	6 cut(s)	112, 446, 1037, 1090, 1198, 1235
HpyCH4IV	ACGT	1 cut(s)	985
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpySE526I	ACGT	1 cut(s)	985
Hsp92II	CATG	5 cut(s)	128, 269, 926, 979, 1300
HspAI	GCGC	1 cut(s)	1339
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	3 cut(s)	457, 781, 945
LmnI	GCTCC	5 cut(s)	401, 502, 616, 842, 1012
Lsp1109I	GCAGC	2 cut(s)	1166, 1234
LweI	GCATC	3 cut(s)	862, 1259, 1331
MaeI	CTAG	4 cut(s)	351, 489, 836, 1020
MaeII	ACGT	1 cut(s)	985
MaeIII	GTNAC	1 cut(s)	971
MalI	GATC	3 cut(s)	459, 783, 947
MboI	GATC	3 cut(s)	457, 781, 945
MboII	GAAGA	3 cut(s)	881, 1013, 1153
MfeI	CAATTG	1 cut(s)	323
MlyI	GAGTC	3 cut(s)	41, 74, 1054
MmeI	TCCRAC	1 cut(s)	69
Mph1103I	ATGCAT	1 cut(s)	924
MseI	TTAA	7 cut(s)	521, 545, 705, 1127, 1193, 1229, 1329
MslI	CAYNNNNRTG	3 cut(s)	437, 807, 1301
MspI	CCGG	2 cut(s)	144, 243
MspR9I	CCNGG	1 cut(s)	144
MunI	CAATTG	1 cut(s)	323
Mva1269I	GAATGC	2 cut(s)	716, 883
MwoI	GCNNNNNNNGC	1 cut(s)	293
NciI	CCSGG	1 cut(s)	144
NdeII	GATC	3 cut(s)	457, 781, 945
NlaIII	CATG	5 cut(s)	128, 269, 926, 979, 1300
NlaIV	GGNNCC	4 cut(s)	303, 504, 600, 1008
NmuCI	GTSAC	1 cut(s)	971
NsiI	ATGCAT	1 cut(s)	924
NspI	RCATGY	3 cut(s)	128, 926, 979
OliI	CACNNNNGTG	1 cut(s)	437
PaeI	GCATGC	1 cut(s)	926
PagI	TCATGA	1 cut(s)	265
PciI	ACATGT	1 cut(s)	124
PctI	GAATGC	2 cut(s)	716, 883
PfeI	GAWTC	4 cut(s)	5, 428, 725, 1109
PflMI	CCANNNNNTGG	1 cut(s)	1297
PkrI	GCNGC	2 cut(s)	1156, 1249
PleI	GAGTC	3 cut(s)	41, 73, 1053
PpsI	GAGTC	3 cut(s)	41, 73, 1053
PscI	ACATGT	1 cut(s)	124
PshBI	ATTAAT	1 cut(s)	1329
PspN4I	GGNNCC	4 cut(s)	303, 504, 600, 1008
PspPI	GGNCC	2 cut(s)	301, 1073
RsaI	GTAC	3 cut(s)	632, 1018, 1177
RsaNI	GTAC	3 cut(s)	631, 1017, 1176
RseI	CAYNNNNRTG	3 cut(s)	437, 807, 1301
SaqAI	TTAA	7 cut(s)	521, 545, 705, 1127, 1193, 1229, 1329
SatI	GCNGC	2 cut(s)	1155, 1248
Sau3AI	GATC	3 cut(s)	457, 781, 945
Sau96I	GGNCC	2 cut(s)	301, 1073
ScaI	AGTACT	1 cut(s)	1177
SchI	GAGTC	3 cut(s)	41, 74, 1054
ScrFI	CCNGG	1 cut(s)	144
SfaNI	GCATC	3 cut(s)	862, 1259, 1331
SfcI	CTRYAG	2 cut(s)	391, 1089
SinI	GGWCC	2 cut(s)	301, 1073
SmiMI	CAYNNNNRTG	3 cut(s)	437, 807, 1301
SmlI	CTYRAG	1 cut(s)	580
SmoI	CTYRAG	1 cut(s)	580
SpeI	ACTAGT	1 cut(s)	1019
SphI	GCATGC	1 cut(s)	926
SsiI	CCGC	1 cut(s)	220
SspMI	CTAG	4 cut(s)	351, 489, 836, 1020
StyD4I	CCNGG	1 cut(s)	142
StyI	CCWWGG	1 cut(s)	531
TaaI	ACNGT	6 cut(s)	112, 446, 1037, 1090, 1198, 1235
TaiI	ACGT	1 cut(s)	988
TaqI	TCGA	1 cut(s)	723
TatI	WGTACW	3 cut(s)	630, 1016, 1175
TfiI	GAWTC	4 cut(s)	5, 428, 725, 1109
Tru1I	TTAA	7 cut(s)	521, 545, 705, 1127, 1193, 1229, 1329
Tru9I	TTAA	7 cut(s)	521, 545, 705, 1127, 1193, 1229, 1329
TscAI	CASTG	6 cut(s)	202, 303, 439, 499, 1093, 1260
TseFI	GTSAC	1 cut(s)	971
TseI	GCWGC	2 cut(s)	1154, 1247
Tsp45I	GTSAC	1 cut(s)	971
TspDTI	ATGAA	6 cut(s)	285, 429, 708, 882, 1328, 1341
TspGWI	ACGGA	2 cut(s)	602, 727
TspRI	CASTG	6 cut(s)	202, 303, 439, 499, 1093, 1260
Van91I	CCANNNNNTGG	1 cut(s)	1297
VpaK11BI	GGWCC	2 cut(s)	301, 1073
VspI	ATTAAT	1 cut(s)	1329
XapI	RAATTY	3 cut(s)	370, 451, 773
XceI	RCATGY	3 cut(s)	128, 926, 979
XcmI	CCANNNNNNNNNTGG	1 cut(s)	373
XspI	CTAG	4 cut(s)	351, 489, 836, 1020
ZrmI	AGTACT	1 cut(s)	1177
Zsp2I	ATGCAT	1 cut(s)	924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.