Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0008122

Physical Location & Seq

Genomic Coordinates Reverse (-)

10150590 .. 10156144

Gene Structure 5555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00169560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGATGCCGGTGTGAAGGATGTCAAAATGCTTATGGCAAGAGGGGAGTTTGTTGACGTGGATTCTGGTGTGTCCGAAGAAGTGATTACTGACAAAGATGGCACGGAAATAAGAGAAAGCACATTTGATGAGAAGCTGCAAATGGTGGCAACAAGGAAAGATTCAAATGATTCACCCAGCCTCACTCCGTTGACACCATCATTGCAATGCTTTGATGATACACATAATGTATCAAAATCCAGGGTCCTTCCGGCAATATGCCGTCCATCTCCTCAATCAGCTCTTACCATCATATCACATCACAGAAATTCAACAAGATCTCCTCAGAGAAATTCAGAGAACAGTGACAATCTTATGGACACAAGTAAAGGATTGTTGGACGTGGGTTCTTATGATTGGCGAGAGGATTACGAGAACATTGGTTTGGAGACTACTTCACCAAGATGCTATGCAGTCCCCACTACATGCCATCTTACTCCACTGTCTGGTCCTGGGTCATTGGCCATAACTTCTTCAGCATCATTGACAACAAGGGATTTGACAAATGCTTCAAAAGTTCAGCTGCGCCCTGGAAGTCACTGTCTCTTGTCAGGTAGTTCTCTTCATTGGCATAGTTCACCAGTCACCCCAATGCATCAGTTCGGTGGGATGAAATCATTTCAAGGTTTTGACTCTGAAAAGGGGCATCACGACCTCCTGCAAGATGATACACCTGAGATATTGAAGGACACTTCTATCCCCATCAAGTCGGTGAAAGTGAGCTCCCCAAATAAGAAGCGTGTTTCTCCTCCTCACAGCCACAATCATGAGCTTGGTACAAGCTCTTCAGGGGGCTTGAGAAGTGGCCGCAAGTTCATACTGAAGGCTGTGCCTTCTTTTCCACCTCTGACCCCTTGTATTGGTTCAAAAGGTAGTAGTACCATTCAGAACATGAATAATCCTCTTCAAGATAAGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

TCR

Protein Analysis

319

Amino Acids

34.62

Weight (kDa)

6.67

Isoelectric Point (pI)

59.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008122)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29570 FvH4_2g29570 FvH4_2g29570
malus_domestica	MD08G1145800.v1.1 MD15G1121200.v1.1
prunus_persica	Prupe.1G473800_v2.0.a1 Prupe.1G473800_v2.0.a1 Prupe.1G473800_v2.0.a1
pyrus_communis	pycom08g12270 pycom15g10940
rosa_chinensis	RchiOBHm_Chr6g0298531
rosa_multiflora	Rmu_co8315197.1_g000001 Rmu_co8448729.1_g000001 Rmu_sc0004500.1_g000005 Rmu_ssc0000289.1_g000056
rosa_roxburghii	Rroxscaffold_7G00169560
rosa_rugosa	Rorug06G0281000 Rorug06G0281000
rosa_samantha	Rh6AG392300 Rh6BG400100 Rh6CG406000 Rh6DG392400 Rh6DG392500
rosa_wichuraiana	Rw6G034290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	485
AciI	CCGC	1 cut(s)	847
AcoI	YGGCCR	2 cut(s)	501, 844
AcsI	RAATTY	2 cut(s)	307, 331
AcuI	CTGAAG	3 cut(s)	498, 810, 881
AfaI	GTAC	2 cut(s)	817, 919
AfiI	CCNNNNNNNGG	2 cut(s)	485, 899
AgsI	TTSAA	7 cut(s)	165, 312, 552, 662, 724, 906, 947
AjiI	CACGTC	2 cut(s)	58, 382
AjnI	CCWGG	3 cut(s)	239, 490, 568
AjuI	GAANNNNNNNTTGG	2 cut(s)	407, 439
AluBI	AGCT	6 cut(s)	136, 281, 562, 762, 811, 822
AluI	AGCT	6 cut(s)	136, 281, 562, 762, 811, 822
Alw21I	GWGCWC	1 cut(s)	764
Alw26I	GTCTC	2 cut(s)	422, 587
AoxI	GGCC	2 cut(s)	501, 844
ApeKI	GCWGC	2 cut(s)	136, 562
ApoI	RAATTY	2 cut(s)	307, 331
AspLEI	GCGC	1 cut(s)	567
AspS9I	GGNCC	2 cut(s)	244, 488
AsuHPI	GGTGA	5 cut(s)	165, 429, 609, 616, 763
AvaII	GGWCC	2 cut(s)	244, 488
BalI	TGGCCA	1 cut(s)	503
BanII	GRGCYC	1 cut(s)	764
BarI	GAAGNNNNNNTAC	2 cut(s)	808, 840
Bbv12I	GWGCWC	1 cut(s)	764
BbvI	GCAGC	2 cut(s)	123, 549
BccI	CCATC	6 cut(s)	92, 205, 274, 296, 477, 749
BceAI	ACGGC	1 cut(s)	246
BciT130I	CCWGG	3 cut(s)	241, 492, 570
BcoDI	GTCTC	2 cut(s)	422, 587
BglII	AGATCT	1 cut(s)	317
BisI	GCNGC	3 cut(s)	137, 563, 847
BlsI	GCNGC	3 cut(s)	138, 564, 848
Bme1390I	CCNGG	3 cut(s)	241, 492, 570
Bme18I	GGWCC	2 cut(s)	244, 488
BmgBI	CACGTC	2 cut(s)	58, 382
BmgT120I	GGNCC	2 cut(s)	244, 488
BmiI	GGNNCC	1 cut(s)	245
BmrFI	CCNGG	3 cut(s)	241, 492, 570
BmsI	GCATC	4 cut(s)	434, 527, 643, 694
BpuEI	CTTGAG	1 cut(s)	856
BsaJI	CCNNGG	3 cut(s)	240, 491, 568
BsaXI	ACNNNNNCTCC	2 cut(s)	304, 334
Bsc4I	CCNNNNNNNGG	2 cut(s)	485, 899
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	1 cut(s)	620
Bse3DI	GCAATG	2 cut(s)	200, 212
BseBI	CCWGG	3 cut(s)	241, 492, 570
BseDI	CCNNGG	3 cut(s)	240, 491, 568
BseGI	GGATG	3 cut(s)	10, 25, 654
BseLI	CCNNNNNNNGG	2 cut(s)	485, 899
BseMI	GCAATG	2 cut(s)	200, 212
BseMII	CTCAG	2 cut(s)	338, 705
BseNI	ACTGG	1 cut(s)	620
BseRI	GAGGAG	4 cut(s)	261, 312, 777, 780
BseXI	GCAGC	2 cut(s)	123, 549
BseYI	CCCAGC	1 cut(s)	176
BshFI	GGCC	2 cut(s)	503, 846
BsiHKAI	GWGCWC	1 cut(s)	764
BsiSI	CCGG	2 cut(s)	9, 251
BslFI	GGGAC	1 cut(s)	440
BslI	CCNNNNNNNGG	2 cut(s)	485, 899
BsmAI	GTCTC	2 cut(s)	422, 587
BsmFI	GGGAC	1 cut(s)	440
BsnI	GGCC	2 cut(s)	503, 846
Bsp1286I	GDGCHC	1 cut(s)	764
Bsp143I	GATC	1 cut(s)	317
BspACI	CCGC	1 cut(s)	847
BspANI	GGCC	2 cut(s)	503, 846
BspCNI	CTCAG	2 cut(s)	337, 706
BspHI	TCATGA	1 cut(s)	805
BspLI	GGNNCC	1 cut(s)	245
BspQI	GCTCTTC	1 cut(s)	829
BsrDI	GCAATG	2 cut(s)	200, 212
BsrFI	RCCGGY	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	620
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	3 cut(s)	240, 491, 568
BssMI	GATC	1 cut(s)	317
Bst2UI	CCWGG	3 cut(s)	241, 492, 570
Bst4CI	ACNGT	3 cut(s)	344, 483, 581
Bst6I	CTCTTC	3 cut(s)	606, 829, 948
BstDEI	CTNAG	2 cut(s)	324, 714
BstF5I	GGATG	3 cut(s)	10, 25, 654
BstHHI	GCGC	1 cut(s)	567
BstKTI	GATC	1 cut(s)	320
BstMAI	GTCTC	2 cut(s)	422, 587
BstMBI	GATC	1 cut(s)	317
BstNI	CCWGG	3 cut(s)	241, 492, 570
BstNSI	RCATGY	1 cut(s)	468
BstSCI	CCNGG	3 cut(s)	239, 490, 568
BstV1I	GCAGC	2 cut(s)	123, 549
BstX2I	RGATCY	1 cut(s)	317
BstYI	RGATCY	1 cut(s)	317
BsuRI	GGCC	2 cut(s)	503, 846
BtrI	CACGTC	2 cut(s)	58, 382
BtsCI	GGATG	3 cut(s)	10, 25, 654
BtsIMutI	CAGTG	3 cut(s)	349, 479, 577
CciI	TCATGA	1 cut(s)	805
CfoI	GCGC	1 cut(s)	567
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	2 cut(s)	244, 488
Csp6I	GTAC	2 cut(s)	816, 918
CviAII	CATG	3 cut(s)	465, 806, 931
CviQI	GTAC	2 cut(s)	816, 918
DdeI	CTNAG	2 cut(s)	324, 714
DpnI	GATC	1 cut(s)	319
DpnII	GATC	1 cut(s)	317
EaeI	YGGCCR	2 cut(s)	501, 844
Eam1104I	CTCTTC	3 cut(s)	606, 829, 948
EarI	CTCTTC	3 cut(s)	606, 829, 948
Ecl136II	GAGCTC	1 cut(s)	762
Eco24I	GRGCYC	1 cut(s)	764
Eco47I	GGWCC	2 cut(s)	244, 488
Eco53kI	GAGCTC	1 cut(s)	762
Eco57I	CTGAAG	3 cut(s)	498, 810, 881
EcoICRI	GAGCTC	1 cut(s)	762
EcoO109I	RGGNCCY	1 cut(s)	244
EcoRII	CCWGG	3 cut(s)	239, 490, 568
EcoT22I	ATGCAT	1 cut(s)	636
EcoT38I	GRGCYC	1 cut(s)	764
FaeI	CATG	3 cut(s)	468, 809, 934
FaqI	GGGAC	1 cut(s)	440
FatI	CATG	3 cut(s)	464, 805, 930
Fnu4HI	GCNGC	3 cut(s)	137, 563, 847
FokI	GGATG	3 cut(s)	17, 32, 661
FriOI	GRGCYC	1 cut(s)	764
Fsp4HI	GCNGC	3 cut(s)	137, 563, 847
GlaI	GCGC	1 cut(s)	566
GluI	GCNGC	3 cut(s)	137, 563, 847
GsaI	CCCAGC	1 cut(s)	180
HaeIII	GGCC	2 cut(s)	503, 846
HapII	CCGG	2 cut(s)	9, 251
HhaI	GCGC	1 cut(s)	567
Hin1II	CATG	3 cut(s)	468, 809, 934
Hin6I	GCGC	1 cut(s)	565
HinP1I	GCGC	1 cut(s)	565
HincII	GTYRAC	2 cut(s)	55, 192
HindII	GTYRAC	2 cut(s)	55, 192
HinfI	GANTC	4 cut(s)	62, 161, 170, 671
HpaII	CCGG	2 cut(s)	9, 251
HphI	GGTGA	5 cut(s)	165, 429, 609, 616, 763
Hpy166II	GTNNAC	3 cut(s)	55, 192, 617
Hpy188I	TCNGA	6 cut(s)	76, 327, 337, 676, 888, 927
Hpy188III	TCNNGA	3 cut(s)	689, 806, 947
Hpy8I	GTNNAC	3 cut(s)	55, 192, 617
HpyAV	CCTTC	5 cut(s)	10, 257, 718, 856, 882
HpyCH4III	ACNGT	3 cut(s)	344, 483, 581
HpyCH4IV	ACGT	2 cut(s)	57, 381
HpyCH4V	TGCA	5 cut(s)	139, 205, 452, 634, 700
HpyF3I	CTNAG	2 cut(s)	324, 714
HpySE526I	ACGT	2 cut(s)	57, 381
Hsp92II	CATG	3 cut(s)	468, 809, 934
HspAI	GCGC	1 cut(s)	565
Kzo9I	GATC	1 cut(s)	317
LguI	GCTCTTC	1 cut(s)	829
LmnI	GCTCC	1 cut(s)	767
Lsp1109I	GCAGC	2 cut(s)	123, 549
LweI	GCATC	4 cut(s)	434, 527, 643, 694
MaeII	ACGT	2 cut(s)	57, 381
MaeIII	GTNAC	3 cut(s)	344, 575, 622
MalI	GATC	1 cut(s)	319
MboI	GATC	1 cut(s)	317
MboII	GAAGA	5 cut(s)	89, 504, 593, 816, 935
MflI	RGATCY	1 cut(s)	317
MhlI	GDGCHC	1 cut(s)	764
MlsI	TGGCCA	1 cut(s)	503
MluCI	AATT	2 cut(s)	307, 331
MluNI	TGGCCA	1 cut(s)	503
MlyI	GAGTC	1 cut(s)	665
MmeI	TCCRAC	1 cut(s)	357
Mox20I	TGGCCA	1 cut(s)	503
Mph1103I	ATGCAT	1 cut(s)	636
MscI	TGGCCA	1 cut(s)	503
MslI	CAYNNNNRTG	4 cut(s)	205, 442, 629, 804
Msp20I	TGGCCA	1 cut(s)	503
MspA1I	CMGCKG	1 cut(s)	562
MspI	CCGG	2 cut(s)	9, 251
MspR9I	CCNGG	3 cut(s)	241, 492, 570
MvaI	CCWGG	3 cut(s)	241, 492, 570
NdeII	GATC	1 cut(s)	317
NlaIII	CATG	3 cut(s)	468, 809, 934
NlaIV	GGNNCC	1 cut(s)	245
NmuCI	GTSAC	3 cut(s)	344, 575, 622
NsiI	ATGCAT	1 cut(s)	636
NspI	RCATGY	1 cut(s)	468
PagI	TCATGA	1 cut(s)	805
PciSI	GCTCTTC	1 cut(s)	829
PfeI	GAWTC	3 cut(s)	62, 161, 170
PflMI	CCANNNNNTGG	1 cut(s)	485
PkrI	GCNGC	3 cut(s)	138, 564, 848
PleI	GAGTC	1 cut(s)	665
PpsI	GAGTC	1 cut(s)	665
PpuMI	RGGWCCY	1 cut(s)	244
Psp124BI	GAGCTC	1 cut(s)	764
Psp5II	RGGWCCY	1 cut(s)	244
Psp6I	CCWGG	3 cut(s)	239, 490, 568
PspFI	CCCAGC	1 cut(s)	176
PspGI	CCWGG	3 cut(s)	239, 490, 568
PspN4I	GGNNCC	1 cut(s)	245
PspPI	GGNCC	2 cut(s)	244, 488
PspPPI	RGGWCCY	1 cut(s)	244
PsuI	RGATCY	1 cut(s)	317
PvuII	CAGCTG	1 cut(s)	562
RsaI	GTAC	2 cut(s)	817, 919
RsaNI	GTAC	2 cut(s)	816, 918
RseI	CAYNNNNRTG	4 cut(s)	205, 442, 629, 804
SacI	GAGCTC	1 cut(s)	764
SapI	GCTCTTC	1 cut(s)	829
SatI	GCNGC	3 cut(s)	137, 563, 847
Sau3AI	GATC	1 cut(s)	317
Sau96I	GGNCC	2 cut(s)	244, 488
SchI	GAGTC	1 cut(s)	665
ScrFI	CCNGG	3 cut(s)	241, 492, 570
SduI	GDGCHC	1 cut(s)	764
SfaNI	GCATC	4 cut(s)	434, 527, 643, 694
SinI	GGWCC	2 cut(s)	244, 488
SmiMI	CAYNNNNRTG	4 cut(s)	205, 442, 629, 804
SmlI	CTYRAG	1 cut(s)	835
SmoI	CTYRAG	1 cut(s)	835
Sse9I	AATT	2 cut(s)	307, 331
SsiI	CCGC	1 cut(s)	847
SstI	GAGCTC	1 cut(s)	764
StyD4I	CCNGG	3 cut(s)	239, 490, 568
TaaI	ACNGT	3 cut(s)	344, 483, 581
TaiI	ACGT	2 cut(s)	60, 384
TasI	AATT	2 cut(s)	307, 331
TauI	GCSGC	1 cut(s)	849
TfiI	GAWTC	3 cut(s)	62, 161, 170
TscAI	CASTG	3 cut(s)	349, 486, 584
TseFI	GTSAC	3 cut(s)	344, 575, 622
TseI	GCWGC	2 cut(s)	136, 562
Tsp45I	GTSAC	3 cut(s)	344, 575, 622
TspDTI	ATGAA	4 cut(s)	593, 665, 844, 947
TspGWI	ACGGA	2 cut(s)	119, 177
TspRI	CASTG	3 cut(s)	349, 486, 584
Van91I	CCANNNNNTGG	1 cut(s)	485
VpaK11BI	GGWCC	2 cut(s)	244, 488
XapI	RAATTY	2 cut(s)	307, 331
XceI	RCATGY	1 cut(s)	468
Zsp2I	ATGCAT	1 cut(s)	636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.