Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8325249.1

Orthogroup ID

OG0013583

Physical Location & Seq

Genomic Coordinates Reverse (-)

324 .. 941

Gene Structure 618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8325249.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atgcttcaggtcggtccaaaggaagccgtagctgtaaactcgatcatgcagctccatagacttctcggatccgattcgaaccggaattctccgattgaaatgatgttgggatggatccgaaatcttaacccgaagattgtcaccgtcgtggagcaagaagcggaccacaacaaggcagggttcttggagcggttcacggaggctctttactactactccaatatgttcgactcgctcgaagcttgcggcgccatgcagccggacaagaccctagcggagatgtacatacaaagagagatatgtaacgtggtatgctgcgagggactggctcgcgtggagagacacgagccgctctccaagtggagaatccggctagaactagccggattcagcccactccacttggggtcgaatgcattcaagcaggcgagtatgctgctgacgctgttctcggcggaaggttatcgtgtggaagagaaggaagggtgtcttacactcggctggcatagccgacctctgattgcggcttcggcttggcaggttatgcctttgcctgaagcaaccgcaacagcgaccaacccacttgggattgttaatcatagtgccaatcatgtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DELLA GRAS

Protein Analysis

205

Amino Acids

22.91

Weight (kDa)

5.98

Isoelectric Point (pI)

38.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013583)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04080
malus_domestica	MD02G1039600.v1.1 MD15G1180500.v1.1
prunus_persica	Prupe.7G236100_v2.0.a1
pyrus_communis	pycom02g03290 pycom15g16190
rosa_chinensis	RchiOBHm_Chr2g0089571
rosa_laevigata	RLG00000016041
rosa_multiflora	Rmu_co8325249.1_g000001 Rmu_co8349301.1_g000001 Rmu_sc0006193.1_g000003
rosa_roxburghii	Rroxscaffold_2G00151810
rosa_rugosa	Rorug02G0001500
rosa_samantha	Rh2AG047000 Rh2BG045800 Rh2CG047600 Rh2DG047200
rosa_wichuraiana	Rw2G003570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	529
AccB1I	GGYRCC	1 cut(s)	248
AccBSI	CCGCTC	2 cut(s)	190, 352
AccII	CGCG	1 cut(s)	333
AciI	CCGC	8 cut(s)	161, 190, 246, 275, 350, 455, 524, 564
AclWI	GGATC	4 cut(s)	63, 76, 109, 122
AcsI	RAATTY	1 cut(s)	85
AcuI	CTGAAG	1 cut(s)	576
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	1 cut(s)	284
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	2 cut(s)	98, 421
AleI	CACNNNNGTG	1 cut(s)	146
AluBI	AGCT	3 cut(s)	32, 52, 242
AluI	AGCT	3 cut(s)	32, 52, 242
Alw26I	GTCTC	1 cut(s)	334
AlwI	GGATC	4 cut(s)	63, 76, 109, 122
ApeKI	GCWGC	4 cut(s)	49, 256, 315, 436
ApoI	RAATTY	1 cut(s)	85
Asp700I	GAANNNNTTC	1 cut(s)	416
AspLEI	GCGC	1 cut(s)	251
AspS9I	GGNCC	2 cut(s)	14, 163
AsuHPI	GGTGA	1 cut(s)	133
AsuII	TTCGAA	1 cut(s)	77
AvaII	GGWCC	2 cut(s)	14, 163
BamHI	GGATCC	2 cut(s)	68, 114
BanI	GGYRCC	1 cut(s)	248
BauI	CACGAG	1 cut(s)	344
BbvI	GCAGC	4 cut(s)	61, 268, 302, 423
BccI	CCATC	1 cut(s)	105
BceAI	ACGGC	1 cut(s)	11
BcgI	CGANNNNNNTGC	2 cut(s)	418, 452
BcoDI	GTCTC	1 cut(s)	334
BfaI	CTAG	3 cut(s)	272, 374, 380
BfoI	RGCGCY	1 cut(s)	252
BfuAI	ACCTGC	1 cut(s)	529
BisI	GCNGC	7 cut(s)	50, 247, 257, 316, 350, 437, 525
BlsI	GCNGC	7 cut(s)	51, 248, 258, 317, 351, 438, 526
Bme18I	GGWCC	2 cut(s)	14, 163
BmgT120I	GGNCC	2 cut(s)	14, 163
BmiI	GGNNCC	3 cut(s)	70, 116, 250
BplI	GAGNNNNNCTC	2 cut(s)	338, 370
Bpu14I	TTCGAA	1 cut(s)	77
BsaHI	GRCGYC	1 cut(s)	249
BsaWI	WCCGGW	1 cut(s)	81
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse1I	ACTGG	1 cut(s)	330
BseGI	GGATG	1 cut(s)	116
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseNI	ACTGG	1 cut(s)	330
BseXI	GCAGC	4 cut(s)	61, 268, 302, 423
Bsh1236I	CGCG	1 cut(s)	333
BshNI	GGYRCC	1 cut(s)	248
BsiSI	CCGG	4 cut(s)	82, 260, 370, 384
BslFI	GGGAC	1 cut(s)	336
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	1 cut(s)	334
BsmFI	GGGAC	1 cut(s)	336
BsmI	GAATGC	2 cut(s)	416, 418
Bsp119I	TTCGAA	1 cut(s)	77
Bsp1407I	TGTACA	1 cut(s)	282
Bsp143I	GATC	3 cut(s)	42, 68, 114
BspACI	CCGC	8 cut(s)	161, 190, 246, 275, 350, 455, 524, 564
BspFNI	CGCG	1 cut(s)	333
BspLI	GGNNCC	3 cut(s)	70, 116, 250
BspMI	ACCTGC	1 cut(s)	529
BspPI	GGATC	4 cut(s)	63, 76, 109, 122
BspT104I	TTCGAA	1 cut(s)	77
BspT107I	GGYRCC	1 cut(s)	248
BsrBI	CCGCTC	2 cut(s)	190, 352
BsrGI	TGTACA	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	330
BssMI	GATC	3 cut(s)	42, 68, 114
BssNI	GRCGYC	1 cut(s)	249
BssSI	CACGAG	1 cut(s)	344
Bst2BI	CACGAG	1 cut(s)	344
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	468
BstACI	GRCGYC	1 cut(s)	249
BstAPI	GCANNNNNTGC	1 cut(s)	544
BstAUI	TGTACA	1 cut(s)	282
BstBI	TTCGAA	1 cut(s)	77
BstC8I	GCNNGC	4 cut(s)	244, 331, 426, 503
BstF5I	GGATG	1 cut(s)	116
BstFNI	CGCG	1 cut(s)	333
BstH2I	RGCGCY	1 cut(s)	252
BstHHI	GCGC	1 cut(s)	251
BstKTI	GATC	3 cut(s)	45, 71, 117
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	3 cut(s)	42, 68, 114
BstMWI	GCNNNNNNNGC	5 cut(s)	248, 442, 507, 530, 544
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	4 cut(s)	61, 268, 302, 423
BstX2I	RGATCY	2 cut(s)	68, 114
BstYI	RGATCY	2 cut(s)	68, 114
BtsCI	GGATG	1 cut(s)	116
BveI	ACCTGC	1 cut(s)	529
Cac8I	GCNNGC	4 cut(s)	244, 331, 426, 503
CfoI	GCGC	1 cut(s)	251
Cfr13I	GGNCC	2 cut(s)	14, 163
CseI	GACGC	1 cut(s)	451
Csp6I	GTAC	1 cut(s)	283
CspCI	CAANNNNNGTGG	2 cut(s)	384, 419
CviAII	CATG	3 cut(s)	46, 253, 611
CviQI	GTAC	1 cut(s)	283
DinI	GGCGCC	1 cut(s)	250
DpnI	GATC	3 cut(s)	44, 70, 116
DpnII	GATC	3 cut(s)	42, 68, 114
Eam1104I	CTCTTC	1 cut(s)	468
EarI	CTCTTC	1 cut(s)	468
EciI	GGCGGA	1 cut(s)	470
Eco47I	GGWCC	2 cut(s)	14, 163
Eco57I	CTGAAG	1 cut(s)	576
EcoRI	GAATTC	1 cut(s)	85
EcoT22I	ATGCAT	1 cut(s)	418
EgeI	GGCGCC	1 cut(s)	250
EheI	GGCGCC	1 cut(s)	250
FaeI	CATG	3 cut(s)	49, 256, 614
FalI	AAGNNNNNCTT	2 cut(s)	474, 506
FaqI	GGGAC	1 cut(s)	336
FatI	CATG	3 cut(s)	45, 252, 610
Fnu4HI	GCNGC	7 cut(s)	50, 247, 257, 316, 350, 437, 525
FokI	GGATG	1 cut(s)	123
Fsp4HI	GCNGC	7 cut(s)	50, 247, 257, 316, 350, 437, 525
FspBI	CTAG	3 cut(s)	272, 374, 380
GlaI	GCGC	1 cut(s)	250
GluI	GCNGC	7 cut(s)	50, 247, 257, 316, 350, 437, 525
HaeII	RGCGCY	1 cut(s)	252
HapII	CCGG	4 cut(s)	82, 260, 370, 384
HgaI	GACGC	1 cut(s)	451
HhaI	GCGC	1 cut(s)	251
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	3 cut(s)	49, 256, 614
Hin6I	GCGC	1 cut(s)	249
HinP1I	GCGC	1 cut(s)	249
HindIII	AAGCTT	1 cut(s)	240
HinfI	GANTC	4 cut(s)	74, 230, 366, 387
HpaII	CCGG	4 cut(s)	82, 260, 370, 384
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	2 cut(s)	37, 195
Hpy188I	TCNGA	5 cut(s)	68, 73, 93, 119, 519
Hpy8I	GTNNAC	2 cut(s)	37, 195
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	3 cut(s)	452, 472, 476
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	3 cut(s)	49, 256, 416
HpyF10VI	GCNNNNNNNGC	5 cut(s)	248, 442, 507, 530, 544
HpySE526I	ACGT	1 cut(s)	306
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	3 cut(s)	49, 256, 614
HspAI	GCGC	1 cut(s)	249
KasI	GGCGCC	1 cut(s)	248
Kzo9I	GATC	3 cut(s)	42, 68, 114
LmnI	GCTCC	3 cut(s)	57, 151, 187
Lsp1109I	GCAGC	4 cut(s)	61, 268, 302, 423
MaeI	CTAG	3 cut(s)	272, 374, 380
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	2 cut(s)	139, 302
MalI	GATC	3 cut(s)	44, 70, 116
MbiI	CCGCTC	2 cut(s)	190, 352
MboI	GATC	3 cut(s)	42, 68, 114
MboII	GAAGA	2 cut(s)	145, 485
MflI	RGATCY	2 cut(s)	68, 114
MluCI	AATT	1 cut(s)	85
Mly113I	GGCGCC	1 cut(s)	249
MlyI	GAGTC	1 cut(s)	224
MnlI	CCTC	3 cut(s)	193, 313, 525
Mph1103I	ATGCAT	1 cut(s)	418
MroXI	GAANNNNTTC	1 cut(s)	416
MseI	TTAA	2 cut(s)	126, 594
MslI	CAYNNNNRTG	1 cut(s)	146
MspI	CCGG	4 cut(s)	82, 260, 370, 384
Mva1269I	GAATGC	2 cut(s)	416, 418
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	5 cut(s)	248, 442, 507, 530, 544
NarI	GGCGCC	1 cut(s)	249
NdeII	GATC	3 cut(s)	42, 68, 114
NlaIII	CATG	3 cut(s)	49, 256, 614
NlaIV	GGNNCC	3 cut(s)	70, 116, 250
NmeAIII	GCCGAG	2 cut(s)	431, 477
NmuCI	GTSAC	1 cut(s)	139
NsiI	ATGCAT	1 cut(s)	418
NspV	TTCGAA	1 cut(s)	77
OliI	CACNNNNGTG	1 cut(s)	146
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PctI	GAATGC	2 cut(s)	416, 418
PdmI	GAANNNNTTC	1 cut(s)	416
PfeI	GAWTC	3 cut(s)	74, 366, 387
PkrI	GCNGC	7 cut(s)	51, 248, 258, 317, 351, 438, 526
PleI	GAGTC	1 cut(s)	224
PluTI	GGCGCC	1 cut(s)	252
PpsI	GAGTC	1 cut(s)	224
PspN4I	GGNNCC	3 cut(s)	70, 116, 250
PspPI	GGNCC	2 cut(s)	14, 163
PsuI	RGATCY	2 cut(s)	68, 114
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
RseI	CAYNNNNRTG	1 cut(s)	146
SaqAI	TTAA	2 cut(s)	126, 594
SatI	GCNGC	7 cut(s)	50, 247, 257, 316, 350, 437, 525
Sau3AI	GATC	3 cut(s)	42, 68, 114
Sau96I	GGNCC	2 cut(s)	14, 163
SchI	GAGTC	1 cut(s)	224
SetI	ASST	8 cut(s)	12, 34, 54, 244, 309, 463, 517, 543
SfoI	GGCGCC	1 cut(s)	250
SfuI	TTCGAA	1 cut(s)	77
SinI	GGWCC	2 cut(s)	14, 163
SmiMI	CAYNNNNRTG	1 cut(s)	146
Sse9I	AATT	1 cut(s)	85
SsiI	CCGC	8 cut(s)	161, 190, 246, 275, 350, 455, 524, 564
SspDI	GGCGCC	1 cut(s)	248
SspMI	CTAG	3 cut(s)	272, 374, 380
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	5 cut(s)	41, 77, 228, 237, 410
TasI	AATT	1 cut(s)	85
TatI	WGTACW	1 cut(s)	282
TauI	GCSGC	3 cut(s)	249, 352, 527
TfiI	GAWTC	3 cut(s)	74, 366, 387
Tru1I	TTAA	2 cut(s)	126, 594
Tru9I	TTAA	2 cut(s)	126, 594
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	4 cut(s)	49, 256, 315, 436
Tsp45I	GTSAC	1 cut(s)	139
TspGWI	ACGGA	1 cut(s)	212
VpaK11BI	GGWCC	2 cut(s)	14, 163
XapI	RAATTY	1 cut(s)	85
XmnI	GAANNNNTTC	1 cut(s)	416
XspI	CTAG	3 cut(s)	272, 374, 380
Zsp2I	ATGCAT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.