Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0013583

Physical Location & Seq

Genomic Coordinates Forward (+)

3333611 .. 3337727

Gene Structure 4117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG047200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1629 bp

ATGGAGCCGTACGGCAATTCCGGTGTCGTCAGCAGCAGCGCCAGCTCCTCTTCCTCCTCCTCCGCCGCCTCCATAACCAAGCCGCATGAGATGGACGGGTATTTGGCCGAGGCCGGGTACAAGGTCCGCTCCTCCGACCTACGACACGTCGCTCAGCGCCTTGAGCGTTTGGAAAACGTCATGGTCAACTCCCCCAACGACCTCGCCCACTTCGCCTCCGACGCCGTCATCTACAACCCCTCCGACCTCGCCTCCTGGGTCGACTCCCTCCTCTCCGCCTCCGACCTCTCCATCTCCGATCTCGACTTCCCTGGCGTCATCATCAACAATCATCACACCGCTCTCCCCACGGCCGACACGTGGACCGATATTCCACCGATCTCCTCCGCCGCCGCGCCGCCGCAGAACCACCACCAGGTAACCGCCGTGATGGAGGAAGACTCCGGGATAAGGCTGGTGCAGCTGCTCGTCACGTGCGCCGAGTCCGTCCAGCGCGGCGACCTCGCATTGGCCGGCTCGATTATCGAGACCATGCAGGCGCTGCTCACACGTGTCAACACGGGTTGCGGCATCGGAAAGGTCGCCGGCTACTTCATCGACGCCCTCAGCCGCCGCGTCTTCACCCCGCAGAGCGTCGGCTCCGACGGCGGCTCGGCTCACCAGAACGAGCTTCTCTACCACTACTTCTACGAAGCCTGCCCCTACCTCAAATTCGCGCATTTCACGGCGAACCAGGCGATCTTGGAGGCTTTCCACGGCCACGATTGCGTCCACGTCATCGACTTCAACTTAATGCACGGACTCCAATGGCCGGCGCTGATTCAGGCTCTGGCTTTACGGCCCGGTGGGCCCCCCTTGCTTCGGCTGACGGGCATTGGACCGCCGTCACCTGATGGCCGTGACTCGCTAAGAGAAATCGGGCTCCGGCTCGCGGAGCTGGCTCGCTCCGTTAACGTCCGTTTCGCTTTCCGCGGCGTGGCGGCTTCGCGGCTGGAGGACGTTAAGCCGTGGATGCTTCAGGTTGGTCCAAAGGAAGCCGTAGCTGTAAACTCGATCATGCAGCTCCATAGACTTCTCGGATCCGATTCGAACCGGAATTCTCCGATTGAAATGATGTTGGGATGGATCCGAAATCTTAACCCGAAGATTGTCACCGTCGTGGAGCAAGAAGCGGACCACAACAAGGCAGGGTTCTTGGAGCGGTTCACGGAGGCTCTTTACTACTACTCCAATATGTTCGACTCGCTCGAAGCTTGCGGCGCCATGCAGCCAGACAAGACCCTAGCGGAGATGTACATACAAAGAGAGATATGTAACGTGGTATGCTGCGAGGGACTGGCTCGCGTCGAGAGACACGAGCCGCTCTCCAAGTGGAGAATCCGGCTAGAACTAGCCGGATTCAGCCCACTCCACTTGGGGTCGAATGCATTCAAGCAGGCGAGTATGCTGCTGACGCTGTTCTCGGCGGAAGGTTATCGTGTGGAAGAGAAGGAAGGGTGTCTTACACTCGGCTGGCATAGCCGACCTCTGATTGCGGCTTCGGCTTGGCAGGTTATGCCTTTGCCTGAAGCAACCGCAACAGCGACCAACCCACTTGGGATTGTTAATCATAGTGCCAATCATGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DELLA GRAS

Protein Analysis

542

Amino Acids

59.21

Weight (kDa)

5.7

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DELLA	PF12041	32 - 93	1.8e-27	Transcriptional regulator DELLA protein N terminal
GRAS	PF03514	152 - 517	1.8e-127	GRAS domain family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013583)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04080
malus_domestica	MD02G1039600.v1.1 MD15G1180500.v1.1
prunus_persica	Prupe.7G236100_v2.0.a1
pyrus_communis	pycom02g03290 pycom15g16190
rosa_chinensis	RchiOBHm_Chr2g0089571
rosa_laevigata	RLG00000016041
rosa_multiflora	Rmu_co8325249.1_g000001 Rmu_co8349301.1_g000001 Rmu_sc0006193.1_g000003
rosa_roxburghii	Rroxscaffold_2G00151810
rosa_rugosa	Rorug02G0001500
rosa_samantha	Rh2AG047000 Rh2BG045800 Rh2CG047600 Rh2DG047200
rosa_wichuraiana	Rw2G003570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1540
AccB1I	GGYRCC	1 cut(s)	1259
AccBSI	CCGCTC	4 cut(s)	129, 341, 1201, 1363
AccI	GTMKAC	1 cut(s)	261
AccII	CGCG	8 cut(s)	395, 495, 615, 716, 932, 972, 988, 1344
AclWI	GGATC	4 cut(s)	1074, 1087, 1120, 1133
AcoI	YGGCCR	6 cut(s)	105, 351, 510, 757, 809, 895
AcsI	RAATTY	2 cut(s)	710, 1096
AcuI	CTGAAG	2 cut(s)	1001, 1587
AcvI	CACGTG	3 cut(s)	360, 474, 551
AcyI	GRCGYC	4 cut(s)	222, 315, 600, 1260
AfaI	GTAC	3 cut(s)	11, 119, 1295
AflIII	ACRYGT	4 cut(s)	145, 357, 548, 550
AgsI	TTSAA	3 cut(s)	787, 1109, 1432
AjiI	CACGTC	2 cut(s)	148, 775
AjnI	CCWGG	4 cut(s)	254, 310, 414, 732
AleI	CACNNNNGTG	1 cut(s)	1157
AluBI	AGCT	7 cut(s)	45, 463, 670, 937, 1043, 1063, 1253
AluI	AGCT	7 cut(s)	45, 463, 670, 937, 1043, 1063, 1253
Alw26I	GTCTC	2 cut(s)	521, 1345
AlwI	GGATC	4 cut(s)	1074, 1087, 1120, 1133
AlwNI	CAGNNNCTG	2 cut(s)	541, 829
AoxI	GGCC	9 cut(s)	105, 111, 351, 510, 757, 809, 839, 848, 895
ApaI	GGGCCC	1 cut(s)	852
ApeKI	GCWGC	9 cut(s)	33, 36, 460, 463, 541, 1060, 1267, 1326, 1447
ApoI	RAATTY	2 cut(s)	710, 1096
Asp700I	GAANNNNTTC	1 cut(s)	1427
AspLEI	GCGC	9 cut(s)	41, 159, 397, 479, 495, 541, 718, 817, 1262
AspS9I	GGNCC	8 cut(s)	124, 363, 840, 848, 849, 878, 1025, 1174
AsuC2I	CCSGG	3 cut(s)	115, 445, 843
AsuHPI	GGTGA	4 cut(s)	613, 650, 879, 1144
AsuII	TTCGAA	1 cut(s)	1088
AvaII	GGWCC	5 cut(s)	124, 363, 878, 1025, 1174
BaeGI	GKGCMC	1 cut(s)	852
BamHI	GGATCC	2 cut(s)	1079, 1125
BanI	GGYRCC	1 cut(s)	1259
BanII	GRGCYC	2 cut(s)	852, 924
BauI	CACGAG	1 cut(s)	1355
BbrPI	CACGTG	3 cut(s)	360, 474, 551
BbsI	GAAGAC	2 cut(s)	444, 610
BbvCI	CCTCAGC	1 cut(s)	605
BbvI	GCAGC	9 cut(s)	45, 48, 450, 472, 528, 1072, 1279, 1313, 1434
BccI	CCATC	5 cut(s)	85, 299, 424, 887, 1116
BcgI	CGANNNNNNTGC	2 cut(s)	1429, 1463
BciT130I	CCWGG	4 cut(s)	256, 312, 416, 734
BcnI	CCSGG	3 cut(s)	115, 445, 843
BcoDI	GTCTC	2 cut(s)	521, 1345
BfaI	CTAG	3 cut(s)	1283, 1385, 1391
BfoI	RGCGCY	5 cut(s)	42, 160, 542, 818, 1263
BfuAI	ACCTGC	1 cut(s)	1540
BglI	GCCNNNNNGGC	1 cut(s)	847
BlpI	GCTNAGC	1 cut(s)	153
Bme1390I	CCNGG	7 cut(s)	115, 256, 312, 416, 445, 734, 843
Bme18I	GGWCC	5 cut(s)	124, 363, 878, 1025, 1174
BmgBI	CACGTC	2 cut(s)	148, 775
BmgT120I	GGNCC	8 cut(s)	124, 363, 840, 848, 849, 878, 1025, 1174
BmiI	GGNNCC	8 cut(s)	6, 640, 850, 851, 923, 1081, 1127, 1261
BmrFI	CCNGG	7 cut(s)	115, 256, 312, 416, 445, 734, 843
BmsI	GCATC	2 cut(s)	579, 1002
BoxI	GACNNNNGTC	1 cut(s)	883
BpiI	GAAGAC	2 cut(s)	444, 610
BplI	GAGNNNNNCTC	4 cut(s)	425, 457, 1349, 1381
BpmI	CTGGAG	1 cut(s)	1013
Bpu10I	CCTNAGC	1 cut(s)	605
Bpu1102I	GCTNAGC	1 cut(s)	153
Bpu14I	TTCGAA	1 cut(s)	1088
BpuEI	CTTGAG	1 cut(s)	182
BpuMI	CCSGG	3 cut(s)	115, 445, 843
BsaAI	YACGTR	3 cut(s)	360, 474, 551
BsaHI	GRCGYC	4 cut(s)	222, 315, 600, 1260
BsaI	GGTCTC	1 cut(s)	521
BsaJI	CCNNGG	7 cut(s)	108, 255, 310, 348, 754, 970, 1007
BsaWI	WCCGGW	2 cut(s)	20, 1092
BsaXI	ACNNNNNCTCC	8 cut(s)	200, 224, 230, 236, 254, 266, 1211, 1241
Bse118I	RCCGGY	3 cut(s)	512, 584, 811
Bse1I	ACTGG	1 cut(s)	1341
BseBI	CCWGG	4 cut(s)	256, 312, 416, 734
BseDI	CCNNGG	7 cut(s)	108, 255, 310, 348, 754, 970, 1007
BseGI	GGATG	2 cut(s)	1017, 1127
BseMII	CTCAG	2 cut(s)	167, 619
BseNI	ACTGG	1 cut(s)	1341
BseRI	GAGGAG	6 cut(s)	37, 46, 49, 121, 260, 373
BseSI	GKGCMC	1 cut(s)	852
BseX3I	CGGCCG	1 cut(s)	351
BseXI	GCAGC	9 cut(s)	45, 48, 450, 472, 528, 1072, 1279, 1313, 1434
BsgI	GTGCAG	1 cut(s)	479
Bsh1236I	CGCG	8 cut(s)	395, 495, 615, 716, 932, 972, 988, 1344
Bsh1285I	CGRYCG	1 cut(s)	354
BshFI	GGCC	9 cut(s)	107, 113, 353, 512, 759, 811, 841, 850, 897
BshNI	GGYRCC	1 cut(s)	1259
BsiEI	CGRYCG	1 cut(s)	354
BsiWI	CGTACG	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	1347
BsmAI	GTCTC	2 cut(s)	521, 1345
BsmFI	GGGAC	1 cut(s)	1347
BsmI	GAATGC	2 cut(s)	1427, 1429
BsnI	GGCC	9 cut(s)	107, 113, 353, 512, 759, 811, 841, 850, 897
Bso31I	GGTCTC	1 cut(s)	521
Bsp119I	TTCGAA	1 cut(s)	1088
Bsp120I	GGGCCC	1 cut(s)	848
Bsp1286I	GDGCHC	2 cut(s)	852, 924
Bsp1407I	TGTACA	1 cut(s)	1293
Bsp143I	GATC	6 cut(s)	298, 378, 738, 1053, 1079, 1125
Bsp1720I	GCTNAGC	1 cut(s)	153
BspANI	GGCC	9 cut(s)	107, 113, 353, 512, 759, 811, 841, 850, 897
BspCNI	CTCAG	2 cut(s)	166, 618
BspFNI	CGCG	8 cut(s)	395, 495, 615, 716, 932, 972, 988, 1344
BspLI	GGNNCC	8 cut(s)	6, 640, 850, 851, 923, 1081, 1127, 1261
BspMI	ACCTGC	1 cut(s)	1540
BspPI	GGATC	4 cut(s)	1074, 1087, 1120, 1133
BspT104I	TTCGAA	1 cut(s)	1088
BspT107I	GGYRCC	1 cut(s)	1259
BspTNI	GGTCTC	1 cut(s)	521
BsrBI	CCGCTC	4 cut(s)	129, 341, 1201, 1363
BsrFI	RCCGGY	3 cut(s)	512, 584, 811
BsrGI	TGTACA	1 cut(s)	1293
BsrI	ACTGG	1 cut(s)	1341
BssAI	RCCGGY	3 cut(s)	512, 584, 811
BssECI	CCNNGG	7 cut(s)	108, 255, 310, 348, 754, 970, 1007
BssMI	GATC	6 cut(s)	298, 378, 738, 1053, 1079, 1125
BssNI	GRCGYC	4 cut(s)	222, 315, 600, 1260
BssSI	CACGAG	1 cut(s)	1355
Bst2BI	CACGAG	1 cut(s)	1355
Bst2UI	CCWGG	4 cut(s)	256, 312, 416, 734
Bst4CI	ACNGT	1 cut(s)	1156
Bst6I	CTCTTC	2 cut(s)	55, 1479
BstACI	GRCGYC	4 cut(s)	222, 315, 600, 1260
BstAPI	GCANNNNNTGC	2 cut(s)	541, 1555
BstAUI	TGTACA	1 cut(s)	1293
BstBAI	YACGTR	3 cut(s)	360, 474, 551
BstBI	TTCGAA	1 cut(s)	1088
BstDEI	CTNAG	3 cut(s)	153, 605, 908
BstDSI	CCRYGG	4 cut(s)	348, 754, 970, 1007
BstEII	GGTNACC	1 cut(s)	418
BstF5I	GGATG	2 cut(s)	1017, 1127
BstFNI	CGCG	8 cut(s)	395, 495, 615, 716, 932, 972, 988, 1344
BstH2I	RGCGCY	5 cut(s)	42, 160, 542, 818, 1263
BstHHI	GCGC	9 cut(s)	41, 159, 397, 479, 495, 541, 718, 817, 1262
BstKTI	GATC	6 cut(s)	301, 381, 741, 1056, 1082, 1128
BstMAI	GTCTC	2 cut(s)	521, 1345
BstMBI	GATC	6 cut(s)	298, 378, 738, 1053, 1079, 1125
BstMCI	CGRYCG	1 cut(s)	354
BstNI	CCWGG	4 cut(s)	256, 312, 416, 734
BstPAI	GACNNNNGTC	1 cut(s)	883
BstPI	GGTNACC	1 cut(s)	418
BstSCI	CCNGG	7 cut(s)	113, 254, 310, 414, 443, 732, 841
BstSLI	GKGCMC	1 cut(s)	852
BstUI	CGCG	8 cut(s)	395, 495, 615, 716, 932, 972, 988, 1344
BstV1I	GCAGC	9 cut(s)	45, 48, 450, 472, 528, 1072, 1279, 1313, 1434
BstV2I	GAAGAC	2 cut(s)	444, 610
BstX2I	RGATCY	2 cut(s)	1079, 1125
BstYI	RGATCY	2 cut(s)	1079, 1125
BstZI	CGGCCG	1 cut(s)	351
BsuRI	GGCC	9 cut(s)	107, 113, 353, 512, 759, 811, 841, 850, 897
BtgI	CCRYGG	4 cut(s)	348, 754, 970, 1007
BtrI	CACGTC	2 cut(s)	148, 775
BtsCI	GGATG	2 cut(s)	1017, 1127
BveI	ACCTGC	1 cut(s)	1540
CaiI	CAGNNNCTG	2 cut(s)	541, 829
CfoI	GCGC	9 cut(s)	41, 159, 397, 479, 495, 541, 718, 817, 1262
Cfr10I	RCCGGY	3 cut(s)	512, 584, 811
Cfr13I	GGNCC	8 cut(s)	124, 363, 840, 848, 849, 878, 1025, 1174
Cfr42I	CCGCGG	1 cut(s)	973
CseI	GACGC	8 cut(s)	230, 304, 604, 608, 622, 757, 1333, 1462
CsiI	ACCWGGT	1 cut(s)	414
Csp6I	GTAC	3 cut(s)	10, 118, 1294
CspCI	CAANNNNNGTGG	2 cut(s)	1395, 1430
CviAII	CATG	6 cut(s)	86, 181, 532, 1057, 1264, 1622
CviQI	GTAC	3 cut(s)	10, 118, 1294
DdeI	CTNAG	3 cut(s)	153, 605, 908
DinI	GGCGCC	1 cut(s)	1261
DpnI	GATC	6 cut(s)	300, 380, 740, 1055, 1081, 1127
DpnII	GATC	6 cut(s)	298, 378, 738, 1053, 1079, 1125
EaeI	YGGCCR	6 cut(s)	105, 351, 510, 757, 809, 895
EagI	CGGCCG	1 cut(s)	351
Eam1104I	CTCTTC	2 cut(s)	55, 1479
EarI	CTCTTC	2 cut(s)	55, 1479
EciI	GGCGGA	4 cut(s)	52, 265, 376, 1481
EclXI	CGGCCG	1 cut(s)	351
Eco24I	GRGCYC	2 cut(s)	852, 924
Eco31I	GGTCTC	1 cut(s)	521
Eco47I	GGWCC	5 cut(s)	124, 363, 878, 1025, 1174
Eco52I	CGGCCG	1 cut(s)	351
Eco57I	CTGAAG	2 cut(s)	1001, 1587
Eco72I	CACGTG	3 cut(s)	360, 474, 551
Eco91I	GGTNACC	1 cut(s)	418
EcoO109I	RGGNCCY	1 cut(s)	849
EcoO65I	GGTNACC	1 cut(s)	418
EcoRI	GAATTC	1 cut(s)	1096
EcoRII	CCWGG	4 cut(s)	254, 310, 414, 732
EcoT22I	ATGCAT	1 cut(s)	1429
EcoT38I	GRGCYC	2 cut(s)	852, 924
EgeI	GGCGCC	1 cut(s)	1261
EheI	GGCGCC	1 cut(s)	1261
FaeI	CATG	6 cut(s)	89, 184, 535, 1060, 1267, 1625
FalI	AAGNNNNNCTT	2 cut(s)	1485, 1517
FaqI	GGGAC	1 cut(s)	1347
FatI	CATG	6 cut(s)	85, 180, 531, 1056, 1263, 1621
FauI	CCCGC	1 cut(s)	633
FblI	GTMKAC	1 cut(s)	261
FokI	GGATG	2 cut(s)	1024, 1134
FriOI	GRGCYC	2 cut(s)	852, 924
FspBI	CTAG	3 cut(s)	1283, 1385, 1391
GlaI	GCGC	9 cut(s)	40, 158, 396, 478, 494, 540, 717, 816, 1261
GsuI	CTGGAG	1 cut(s)	1013
HaeII	RGCGCY	5 cut(s)	42, 160, 542, 818, 1263
HaeIII	GGCC	9 cut(s)	107, 113, 353, 512, 759, 811, 841, 850, 897
HgaI	GACGC	8 cut(s)	230, 304, 604, 608, 622, 757, 1333, 1462
HhaI	GCGC	9 cut(s)	41, 159, 397, 479, 495, 541, 718, 817, 1262
Hin1I	GRCGYC	4 cut(s)	222, 315, 600, 1260
Hin1II	CATG	6 cut(s)	89, 184, 535, 1060, 1267, 1625
Hin6I	GCGC	9 cut(s)	39, 157, 395, 477, 493, 539, 716, 815, 1260
HinP1I	GCGC	9 cut(s)	39, 157, 395, 477, 493, 539, 716, 815, 1260
HincII	GTYRAC	4 cut(s)	187, 262, 556, 952
HindII	GTYRAC	4 cut(s)	187, 262, 556, 952
HindIII	AAGCTT	1 cut(s)	1251
HpaI	GTTAAC	1 cut(s)	952
HphI	GGTGA	4 cut(s)	613, 650, 879, 1144
Hpy166II	GTNNAC	8 cut(s)	187, 262, 363, 556, 772, 952, 1048, 1206
Hpy188III	TCNNGA	3 cut(s)	302, 526, 1348
Hpy8I	GTNNAC	8 cut(s)	187, 262, 363, 556, 772, 952, 1048, 1206
Hpy99I	CGWCG	7 cut(s)	152, 224, 602, 638, 647, 1160, 1349
HpyAV	CCTTC	3 cut(s)	1463, 1483, 1487
HpyCH4III	ACNGT	1 cut(s)	1156
HpyCH4IV	ACGT	9 cut(s)	147, 177, 359, 473, 550, 774, 954, 999, 1317
HpyCH4V	TGCA	6 cut(s)	460, 535, 796, 1060, 1267, 1427
HpyF3I	CTNAG	3 cut(s)	153, 605, 908
HpySE526I	ACGT	9 cut(s)	147, 177, 359, 473, 550, 774, 954, 999, 1317
Hsp92I	GRCGYC	4 cut(s)	222, 315, 600, 1260
Hsp92II	CATG	6 cut(s)	89, 184, 535, 1060, 1267, 1625
HspAI	GCGC	9 cut(s)	39, 157, 395, 477, 493, 539, 716, 815, 1260
KasI	GGCGCC	1 cut(s)	1259
KroI	GCCGGC	3 cut(s)	512, 584, 811
KroNI	GCCGGC	3 cut(s)	514, 586, 813
KspAI	GTTAAC	1 cut(s)	952
KspI	CCGCGG	1 cut(s)	973
Kzo9I	GATC	6 cut(s)	298, 378, 738, 1053, 1079, 1125
Lsp1109I	GCAGC	9 cut(s)	45, 48, 450, 472, 528, 1072, 1279, 1313, 1434
LweI	GCATC	2 cut(s)	579, 1002
MabI	ACCWGGT	1 cut(s)	414
MaeI	CTAG	3 cut(s)	1283, 1385, 1391
MaeII	ACGT	9 cut(s)	147, 177, 359, 473, 550, 774, 954, 999, 1317
MaeIII	GTNAC	6 cut(s)	418, 469, 885, 899, 1150, 1313
MalI	GATC	6 cut(s)	300, 380, 740, 1055, 1081, 1127
MbiI	CCGCTC	4 cut(s)	129, 341, 1201, 1363
MboI	GATC	6 cut(s)	298, 378, 738, 1053, 1079, 1125
MboII	GAAGA	5 cut(s)	42, 449, 610, 1156, 1496
MflI	RGATCY	2 cut(s)	1079, 1125
MhlI	GDGCHC	2 cut(s)	852, 924
MluCI	AATT	3 cut(s)	16, 710, 1096
Mly113I	GGCGCC	1 cut(s)	1260
MlyI	GAGTC	6 cut(s)	257, 434, 491, 795, 896, 1235
MmeI	TCCRAC	5 cut(s)	159, 243, 267, 306, 666
Mph1103I	ATGCAT	1 cut(s)	1429
MroNI	GCCGGC	3 cut(s)	512, 584, 811
MroXI	GAANNNNTTC	1 cut(s)	1427
MseI	TTAA	5 cut(s)	791, 951, 1002, 1137, 1605
MslI	CAYNNNNRTG	1 cut(s)	1157
MspA1I	CMGCKG	2 cut(s)	463, 972
MspR9I	CCNGG	7 cut(s)	115, 256, 312, 416, 445, 734, 843
Mva1269I	GAATGC	2 cut(s)	1427, 1429
MvaI	CCWGG	4 cut(s)	256, 312, 416, 734
MvnI	CGCG	8 cut(s)	395, 495, 615, 716, 932, 972, 988, 1344
NaeI	GCCGGC	3 cut(s)	514, 586, 813
NarI	GGCGCC	1 cut(s)	1260
NciI	CCSGG	3 cut(s)	115, 445, 843
NdeII	GATC	6 cut(s)	298, 378, 738, 1053, 1079, 1125
NgoMIV	GCCGGC	3 cut(s)	512, 584, 811
NlaIII	CATG	6 cut(s)	89, 184, 535, 1060, 1267, 1625
NlaIV	GGNNCC	8 cut(s)	6, 640, 850, 851, 923, 1081, 1127, 1261
NmeAIII	GCCGAG	5 cut(s)	133, 505, 632, 1442, 1488
NmuCI	GTSAC	4 cut(s)	469, 885, 899, 1150
NsiI	ATGCAT	1 cut(s)	1429
NspV	TTCGAA	1 cut(s)	1088
OliI	CACNNNNGTG	1 cut(s)	1157
PcsI	WCGNNNNNNNCGW	3 cut(s)	356, 1245, 1353
PctI	GAATGC	2 cut(s)	1427, 1429
PdiI	GCCGGC	3 cut(s)	514, 586, 813
PdmI	GAANNNNTTC	1 cut(s)	1427
PfeI	GAWTC	4 cut(s)	820, 1085, 1377, 1398
Pfl23II	CGTACG	1 cut(s)	9
PflFI	GACNNNGTC	1 cut(s)	224
PfoI	TCCNGGA	1 cut(s)	443
PleI	GAGTC	6 cut(s)	257, 434, 490, 795, 896, 1235
PluTI	GGCGCC	1 cut(s)	1263
PmaCI	CACGTG	3 cut(s)	360, 474, 551
PmlI	CACGTG	3 cut(s)	360, 474, 551
PpsI	GAGTC	6 cut(s)	257, 434, 490, 795, 896, 1235
Ppu21I	YACGTR	3 cut(s)	360, 474, 551
PshAI	GACNNNNGTC	1 cut(s)	883
Psp6I	CCWGG	4 cut(s)	254, 310, 414, 732
PspCI	CACGTG	3 cut(s)	360, 474, 551
PspEI	GGTNACC	1 cut(s)	418
PspGI	CCWGG	4 cut(s)	254, 310, 414, 732
PspLI	CGTACG	1 cut(s)	9
PspN4I	GGNNCC	8 cut(s)	6, 640, 850, 851, 923, 1081, 1127, 1261
PspOMI	GGGCCC	1 cut(s)	848
PspPI	GGNCC	8 cut(s)	124, 363, 840, 848, 849, 878, 1025, 1174
PstNI	CAGNNNCTG	2 cut(s)	541, 829
PsuI	RGATCY	2 cut(s)	1079, 1125
PsyI	GACNNNGTC	1 cut(s)	224
PvuII	CAGCTG	1 cut(s)	463
RsaI	GTAC	3 cut(s)	11, 119, 1295
RsaNI	GTAC	3 cut(s)	10, 118, 1294
RseI	CAYNNNNRTG	1 cut(s)	1157
SacII	CCGCGG	1 cut(s)	973
SalI	GTCGAC	1 cut(s)	260
SaqAI	TTAA	5 cut(s)	791, 951, 1002, 1137, 1605
Sau3AI	GATC	6 cut(s)	298, 378, 738, 1053, 1079, 1125
Sau96I	GGNCC	8 cut(s)	124, 363, 840, 848, 849, 878, 1025, 1174
SchI	GAGTC	6 cut(s)	257, 434, 491, 795, 896, 1235
ScrFI	CCNGG	7 cut(s)	115, 256, 312, 416, 445, 734, 843
SduI	GDGCHC	2 cut(s)	852, 924
SexAI	ACCWGGT	1 cut(s)	414
SfaNI	GCATC	2 cut(s)	579, 1002
SfiI	GGCCNNNNNGGCC	1 cut(s)	847
SfoI	GGCGCC	1 cut(s)	1261
Sfr303I	CCGCGG	1 cut(s)	973
SfuI	TTCGAA	1 cut(s)	1088
SgrBI	CCGCGG	1 cut(s)	973
SinI	GGWCC	5 cut(s)	124, 363, 878, 1025, 1174
SmiMI	CAYNNNNRTG	1 cut(s)	1157
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	3 cut(s)	16, 710, 1096
SspDI	GGCGCC	1 cut(s)	1259
SspMI	CTAG	3 cut(s)	1283, 1385, 1391
StyD4I	CCNGG	7 cut(s)	113, 254, 310, 414, 443, 732, 841
TaaI	ACNGT	1 cut(s)	1156
TaiI	ACGT	9 cut(s)	150, 180, 362, 476, 553, 777, 957, 1002, 1320
TaqII	GACCGA	1 cut(s)	380
TasI	AATT	3 cut(s)	16, 710, 1096
TatI	WGTACW	1 cut(s)	1293
TfiI	GAWTC	4 cut(s)	820, 1085, 1377, 1398
Tru1I	TTAA	5 cut(s)	791, 951, 1002, 1137, 1605
Tru9I	TTAA	5 cut(s)	791, 951, 1002, 1137, 1605
TseFI	GTSAC	4 cut(s)	469, 885, 899, 1150
TseI	GCWGC	9 cut(s)	33, 36, 460, 463, 541, 1060, 1267, 1326, 1447
Tsp45I	GTSAC	4 cut(s)	469, 885, 899, 1150
TspDTI	ATGAA	1 cut(s)	583
TspGWI	ACGGA	5 cut(s)	475, 813, 937, 947, 1223
Tth111I	GACNNNGTC	1 cut(s)	224
VpaK11BI	GGWCC	5 cut(s)	124, 363, 878, 1025, 1174
XapI	RAATTY	2 cut(s)	710, 1096
XmiI	GTMKAC	1 cut(s)	261
XmnI	GAANNNNTTC	1 cut(s)	1427
XspI	CTAG	3 cut(s)	1283, 1385, 1391
Zsp2I	ATGCAT	1 cut(s)	1429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.