Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8349301.1

Orthogroup ID

OG0013583

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 914

Gene Structure 913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8349301.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 913 bp

atggagccgtacggcaattccggtgtcgtcagcagcagcgccagctcctcttcctcctcctccgccgcctccataaccaagccgcatgatatggacgggtatttggccgaggccgggtacaaggtccgctcctccgacctacgacacgtcgctcagcgccttgagcgtttggaaaacgtcatggtcaactcccccaacgacctcgcccacttcgcctccgacgccgtcatctacaacccctccgacctcgcctcctgggtcgactccctcctctccgcctccgatctcgacttccctggcgtcatcatcaacaatcatcacaccgctctccccaccgccgacacgtggaccgaaattccaccgatcccctccgccgccgcgccgccgcagaaccaccaccaggtaaccgccgtgatggaggaagactccgggataaggctggtgcagctgctcgtcacgtgcgccgagtccgtccagcgcggcgacctcgcattggccggctcgattatcgagaccatgcaggcgctgctcacacgtgtcaacacgggttgcggcatcggaaaggtcgccggctacttcatcgacgccctcagccgccgcgtcttcaccccgcagagcgtcggctccgacggcggctcggctcaccagaacgagcttctctaccactacttctacgaagcctgcccctacctcaaattcgcgcatttcacggcaaaccaggcgatcttggaggccttccacggccacgattgcgtccacgtcatcgacttcaacttaatgcacggactccaatggccggcgctgattcaggctctggctttacggcccggtgggccccccttgcttcggctgacgggcattggaccgccgtcacctgatggccgtgactcgctaagagaaatcgggctccggc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DELLA GRAS

Protein Analysis

304

Amino Acids

32.67

Weight (kDa)

5.42

Isoelectric Point (pI)

41.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013583)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04080
malus_domestica	MD02G1039600.v1.1 MD15G1180500.v1.1
prunus_persica	Prupe.7G236100_v2.0.a1
pyrus_communis	pycom02g03290 pycom15g16190
rosa_chinensis	RchiOBHm_Chr2g0089571
rosa_laevigata	RLG00000016041
rosa_multiflora	Rmu_co8325249.1_g000001 Rmu_co8349301.1_g000001 Rmu_sc0006193.1_g000003
rosa_roxburghii	Rroxscaffold_2G00151810
rosa_rugosa	Rorug02G0001500
rosa_samantha	Rh2AG047000 Rh2BG045800 Rh2CG047600 Rh2DG047200
rosa_wichuraiana	Rw2G003570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	129, 326
AccI	GTMKAC	1 cut(s)	261
AccII	CGCG	4 cut(s)	380, 480, 600, 701
AclWI	GGATC	1 cut(s)	358
AcoI	YGGCCR	5 cut(s)	105, 495, 742, 794, 880
AcsI	RAATTY	2 cut(s)	354, 695
AcvI	CACGTG	3 cut(s)	345, 459, 536
AcyI	GRCGYC	3 cut(s)	222, 300, 585
AfaI	GTAC	2 cut(s)	11, 119
AfiI	CCNNNNNNNGG	7 cut(s)	114, 345, 400, 435, 493, 796, 846
AflIII	ACRYGT	4 cut(s)	145, 342, 533, 535
AgsI	TTSAA	1 cut(s)	772
AjiI	CACGTC	2 cut(s)	148, 760
AjnI	CCWGG	4 cut(s)	254, 295, 399, 717
AluBI	AGCT	3 cut(s)	45, 448, 655
AluI	AGCT	3 cut(s)	45, 448, 655
Alw26I	GTCTC	1 cut(s)	506
AlwI	GGATC	1 cut(s)	358
AlwNI	CAGNNNCTG	2 cut(s)	526, 814
AoxI	GGCC	9 cut(s)	105, 111, 495, 732, 742, 794, 824, 833, 880
ApaI	GGGCCC	1 cut(s)	837
ApeKI	GCWGC	5 cut(s)	33, 36, 445, 448, 526
ApoI	RAATTY	2 cut(s)	354, 695
AspLEI	GCGC	8 cut(s)	41, 159, 382, 464, 480, 526, 703, 802
AspS9I	GGNCC	6 cut(s)	124, 348, 825, 833, 834, 863
AsuC2I	CCSGG	3 cut(s)	115, 430, 828
AsuHPI	GGTGA	3 cut(s)	598, 635, 864
AvaII	GGWCC	3 cut(s)	124, 348, 863
BaeGI	GKGCMC	1 cut(s)	837
BanII	GRGCYC	2 cut(s)	837, 909
BbrPI	CACGTG	3 cut(s)	345, 459, 536
BbsI	GAAGAC	2 cut(s)	429, 595
BbvCI	CCTCAGC	1 cut(s)	590
BbvI	GCAGC	5 cut(s)	45, 48, 435, 457, 513
BccI	CCATC	2 cut(s)	409, 872
BceAI	ACGGC	9 cut(s)	28, 209, 395, 646, 726, 757, 839, 853, 867
BciT130I	CCWGG	4 cut(s)	256, 297, 401, 719
BcnI	CCSGG	3 cut(s)	115, 430, 828
BcoDI	GTCTC	1 cut(s)	506
BfoI	RGCGCY	4 cut(s)	42, 160, 527, 803
BglI	GCCNNNNNGGC	1 cut(s)	832
BlpI	GCTNAGC	1 cut(s)	153
Bme1390I	CCNGG	7 cut(s)	115, 256, 297, 401, 430, 719, 828
Bme18I	GGWCC	3 cut(s)	124, 348, 863
BmgBI	CACGTC	2 cut(s)	148, 760
BmgT120I	GGNCC	6 cut(s)	124, 348, 825, 833, 834, 863
BmiI	GGNNCC	5 cut(s)	6, 625, 835, 836, 908
BmrFI	CCNGG	7 cut(s)	115, 256, 297, 401, 430, 719, 828
BmsI	GCATC	1 cut(s)	564
BoxI	GACNNNNGTC	1 cut(s)	868
BpiI	GAAGAC	2 cut(s)	429, 595
BplI	GAGNNNNNCTC	2 cut(s)	410, 442
Bpu10I	CCTNAGC	1 cut(s)	590
Bpu1102I	GCTNAGC	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	182
BpuMI	CCSGG	3 cut(s)	115, 430, 828
BsaAI	YACGTR	3 cut(s)	345, 459, 536
BsaHI	GRCGYC	3 cut(s)	222, 300, 585
BsaI	GGTCTC	1 cut(s)	506
BsaJI	CCNNGG	4 cut(s)	108, 255, 295, 739
BsaWI	WCCGGW	1 cut(s)	20
BsaXI	ACNNNNNCTCC	6 cut(s)	200, 224, 230, 236, 254, 266
Bsc4I	CCNNNNNNNGG	7 cut(s)	114, 345, 400, 435, 493, 796, 846
Bse118I	RCCGGY	3 cut(s)	497, 569, 796
BseBI	CCWGG	4 cut(s)	256, 297, 401, 719
BseDI	CCNNGG	4 cut(s)	108, 255, 295, 739
BseLI	CCNNNNNNNGG	7 cut(s)	114, 345, 400, 435, 493, 796, 846
BseMII	CTCAG	2 cut(s)	167, 604
BseRI	GAGGAG	5 cut(s)	37, 46, 49, 121, 260
BseSI	GKGCMC	1 cut(s)	837
BseXI	GCAGC	5 cut(s)	45, 48, 435, 457, 513
BsgI	GTGCAG	1 cut(s)	464
Bsh1236I	CGCG	4 cut(s)	380, 480, 600, 701
BshFI	GGCC	9 cut(s)	107, 113, 497, 734, 744, 796, 826, 835, 882
BsiSI	CCGG	8 cut(s)	21, 114, 429, 498, 570, 797, 828, 910
BsiWI	CGTACG	1 cut(s)	9
BslI	CCNNNNNNNGG	7 cut(s)	114, 345, 400, 435, 493, 796, 846
BsmAI	GTCTC	1 cut(s)	506
BsnI	GGCC	9 cut(s)	107, 113, 497, 734, 744, 796, 826, 835, 882
Bso31I	GGTCTC	1 cut(s)	506
Bsp120I	GGGCCC	1 cut(s)	833
Bsp1286I	GDGCHC	2 cut(s)	837, 909
Bsp143I	GATC	3 cut(s)	283, 363, 723
Bsp1720I	GCTNAGC	1 cut(s)	153
BspANI	GGCC	9 cut(s)	107, 113, 497, 734, 744, 796, 826, 835, 882
BspCNI	CTCAG	2 cut(s)	166, 603
BspFNI	CGCG	4 cut(s)	380, 480, 600, 701
BspLI	GGNNCC	5 cut(s)	6, 625, 835, 836, 908
BspPI	GGATC	1 cut(s)	358
BspTNI	GGTCTC	1 cut(s)	506
BsrBI	CCGCTC	2 cut(s)	129, 326
BsrFI	RCCGGY	3 cut(s)	497, 569, 796
BssAI	RCCGGY	3 cut(s)	497, 569, 796
BssECI	CCNNGG	4 cut(s)	108, 255, 295, 739
BssMI	GATC	3 cut(s)	283, 363, 723
BssNI	GRCGYC	3 cut(s)	222, 300, 585
Bst2UI	CCWGG	4 cut(s)	256, 297, 401, 719
Bst6I	CTCTTC	1 cut(s)	55
BstACI	GRCGYC	3 cut(s)	222, 300, 585
BstAPI	GCANNNNNTGC	1 cut(s)	526
BstBAI	YACGTR	3 cut(s)	345, 459, 536
BstC8I	GCNNGC	6 cut(s)	43, 499, 522, 571, 682, 798
BstDEI	CTNAG	3 cut(s)	153, 590, 893
BstDSI	CCRYGG	1 cut(s)	739
BstEII	GGTNACC	1 cut(s)	403
BstFNI	CGCG	4 cut(s)	380, 480, 600, 701
BstH2I	RGCGCY	4 cut(s)	42, 160, 527, 803
BstHHI	GCGC	8 cut(s)	41, 159, 382, 464, 480, 526, 703, 802
BstKTI	GATC	3 cut(s)	286, 366, 726
BstMAI	GTCTC	1 cut(s)	506
BstMBI	GATC	3 cut(s)	283, 363, 723
BstNI	CCWGG	4 cut(s)	256, 297, 401, 719
BstPAI	GACNNNNGTC	1 cut(s)	868
BstPI	GGTNACC	1 cut(s)	403
BstSCI	CCNGG	7 cut(s)	113, 254, 295, 399, 428, 717, 826
BstSLI	GKGCMC	1 cut(s)	837
BstUI	CGCG	4 cut(s)	380, 480, 600, 701
BstV1I	GCAGC	5 cut(s)	45, 48, 435, 457, 513
BstV2I	GAAGAC	2 cut(s)	429, 595
BsuRI	GGCC	9 cut(s)	107, 113, 497, 734, 744, 796, 826, 835, 882
BtgI	CCRYGG	1 cut(s)	739
BtrI	CACGTC	2 cut(s)	148, 760
Cac8I	GCNNGC	6 cut(s)	43, 499, 522, 571, 682, 798
CaiI	CAGNNNCTG	2 cut(s)	526, 814
CfoI	GCGC	8 cut(s)	41, 159, 382, 464, 480, 526, 703, 802
Cfr10I	RCCGGY	3 cut(s)	497, 569, 796
Cfr13I	GGNCC	6 cut(s)	124, 348, 825, 833, 834, 863
CseI	GACGC	6 cut(s)	230, 289, 589, 593, 607, 742
CsiI	ACCWGGT	1 cut(s)	399
Csp6I	GTAC	2 cut(s)	10, 118
CviAII	CATG	3 cut(s)	86, 181, 517
CviQI	GTAC	2 cut(s)	10, 118
DdeI	CTNAG	3 cut(s)	153, 590, 893
DpnI	GATC	3 cut(s)	285, 365, 725
DpnII	GATC	3 cut(s)	283, 363, 723
EaeI	YGGCCR	5 cut(s)	105, 495, 742, 794, 880
Eam1104I	CTCTTC	1 cut(s)	55
EarI	CTCTTC	1 cut(s)	55
EciI	GGCGGA	3 cut(s)	52, 265, 361
Eco147I	AGGCCT	1 cut(s)	734
Eco24I	GRGCYC	2 cut(s)	837, 909
Eco31I	GGTCTC	1 cut(s)	506
Eco47I	GGWCC	3 cut(s)	124, 348, 863
Eco72I	CACGTG	3 cut(s)	345, 459, 536
Eco91I	GGTNACC	1 cut(s)	403
EcoO109I	RGGNCCY	1 cut(s)	834
EcoO65I	GGTNACC	1 cut(s)	403
EcoRII	CCWGG	4 cut(s)	254, 295, 399, 717
EcoT38I	GRGCYC	2 cut(s)	837, 909
FaeI	CATG	3 cut(s)	89, 184, 520
FaiI	YATR	5 cut(s)	74, 87, 92, 182, 518
FatI	CATG	3 cut(s)	85, 180, 516
FauI	CCCGC	1 cut(s)	618
FblI	GTMKAC	1 cut(s)	261
FriOI	GRGCYC	2 cut(s)	837, 909
GlaI	GCGC	8 cut(s)	40, 158, 381, 463, 479, 525, 702, 801
HaeII	RGCGCY	4 cut(s)	42, 160, 527, 803
HaeIII	GGCC	9 cut(s)	107, 113, 497, 734, 744, 796, 826, 835, 882
HapII	CCGG	8 cut(s)	21, 114, 429, 498, 570, 797, 828, 910
HgaI	GACGC	6 cut(s)	230, 289, 589, 593, 607, 742
HhaI	GCGC	8 cut(s)	41, 159, 382, 464, 480, 526, 703, 802
Hin1I	GRCGYC	3 cut(s)	222, 300, 585
Hin1II	CATG	3 cut(s)	89, 184, 520
Hin6I	GCGC	8 cut(s)	39, 157, 380, 462, 478, 524, 701, 800
HinP1I	GCGC	8 cut(s)	39, 157, 380, 462, 478, 524, 701, 800
HincII	GTYRAC	3 cut(s)	187, 262, 541
HindII	GTYRAC	3 cut(s)	187, 262, 541
HinfI	GANTC	6 cut(s)	263, 425, 467, 786, 805, 887
HpaII	CCGG	8 cut(s)	21, 114, 429, 498, 570, 797, 828, 910
HphI	GGTGA	3 cut(s)	598, 635, 864
Hpy166II	GTNNAC	5 cut(s)	187, 262, 348, 541, 757
Hpy188I	TCNGA	6 cut(s)	136, 220, 244, 283, 560, 628
Hpy188III	TCNNGA	2 cut(s)	287, 511
Hpy8I	GTNNAC	5 cut(s)	187, 262, 348, 541, 757
Hpy99I	CGWCG	5 cut(s)	152, 224, 587, 623, 632
HpyAV	CCTTC	1 cut(s)	745
HpyCH4IV	ACGT	6 cut(s)	147, 177, 344, 458, 535, 759
HpyCH4V	TGCA	3 cut(s)	445, 520, 781
HpyF3I	CTNAG	3 cut(s)	153, 590, 893
HpySE526I	ACGT	6 cut(s)	147, 177, 344, 458, 535, 759
Hsp92I	GRCGYC	3 cut(s)	222, 300, 585
Hsp92II	CATG	3 cut(s)	89, 184, 520
HspAI	GCGC	8 cut(s)	39, 157, 380, 462, 478, 524, 701, 800
KroI	GCCGGC	3 cut(s)	497, 569, 796
KroNI	GCCGGC	3 cut(s)	499, 571, 798
Kzo9I	GATC	3 cut(s)	283, 363, 723
LmnI	GCTCC	5 cut(s)	4, 50, 134, 629, 912
Lsp1109I	GCAGC	5 cut(s)	45, 48, 435, 457, 513
LweI	GCATC	1 cut(s)	564
MabI	ACCWGGT	1 cut(s)	399
MaeII	ACGT	6 cut(s)	147, 177, 344, 458, 535, 759
MaeIII	GTNAC	4 cut(s)	403, 454, 870, 884
MalI	GATC	3 cut(s)	285, 365, 725
MbiI	CCGCTC	2 cut(s)	129, 326
MboI	GATC	3 cut(s)	283, 363, 723
MboII	GAAGA	3 cut(s)	42, 434, 595
MhlI	GDGCHC	2 cut(s)	837, 909
MluCI	AATT	3 cut(s)	16, 354, 695
MlyI	GAGTC	5 cut(s)	257, 419, 476, 780, 881
MmeI	TCCRAC	4 cut(s)	159, 243, 267, 651
MroNI	GCCGGC	3 cut(s)	497, 569, 796
MseI	TTAA	1 cut(s)	776
MspA1I	CMGCKG	1 cut(s)	448
MspI	CCGG	8 cut(s)	21, 114, 429, 498, 570, 797, 828, 910
MspR9I	CCNGG	7 cut(s)	115, 256, 297, 401, 430, 719, 828
MvaI	CCWGG	4 cut(s)	256, 297, 401, 719
MvnI	CGCG	4 cut(s)	380, 480, 600, 701
NaeI	GCCGGC	3 cut(s)	499, 571, 798
NciI	CCSGG	3 cut(s)	115, 430, 828
NdeII	GATC	3 cut(s)	283, 363, 723
NgoMIV	GCCGGC	3 cut(s)	497, 569, 796
NlaIII	CATG	3 cut(s)	89, 184, 520
NlaIV	GGNNCC	5 cut(s)	6, 625, 835, 836, 908
NmeAIII	GCCGAG	3 cut(s)	133, 490, 617
NmuCI	GTSAC	3 cut(s)	454, 870, 884
PceI	AGGCCT	1 cut(s)	734
PdiI	GCCGGC	3 cut(s)	499, 571, 798
PfeI	GAWTC	1 cut(s)	805
Pfl23II	CGTACG	1 cut(s)	9
PflFI	GACNNNGTC	1 cut(s)	224
PfoI	TCCNGGA	1 cut(s)	428
PleI	GAGTC	5 cut(s)	257, 419, 475, 780, 881
PmaCI	CACGTG	3 cut(s)	345, 459, 536
PmlI	CACGTG	3 cut(s)	345, 459, 536
PpsI	GAGTC	5 cut(s)	257, 419, 475, 780, 881
Ppu21I	YACGTR	3 cut(s)	345, 459, 536
PshAI	GACNNNNGTC	1 cut(s)	868
Psp6I	CCWGG	4 cut(s)	254, 295, 399, 717
PspCI	CACGTG	3 cut(s)	345, 459, 536
PspEI	GGTNACC	1 cut(s)	403
PspGI	CCWGG	4 cut(s)	254, 295, 399, 717
PspLI	CGTACG	1 cut(s)	9
PspN4I	GGNNCC	5 cut(s)	6, 625, 835, 836, 908
PspOMI	GGGCCC	1 cut(s)	833
PspPI	GGNCC	6 cut(s)	124, 348, 825, 833, 834, 863
PstNI	CAGNNNCTG	2 cut(s)	526, 814
PsyI	GACNNNGTC	1 cut(s)	224
PvuII	CAGCTG	1 cut(s)	448
RsaI	GTAC	2 cut(s)	11, 119
RsaNI	GTAC	2 cut(s)	10, 118
SalI	GTCGAC	1 cut(s)	260
SaqAI	TTAA	1 cut(s)	776
Sau3AI	GATC	3 cut(s)	283, 363, 723
Sau96I	GGNCC	6 cut(s)	124, 348, 825, 833, 834, 863
SchI	GAGTC	5 cut(s)	257, 419, 476, 780, 881
ScrFI	CCNGG	7 cut(s)	115, 256, 297, 401, 430, 719, 828
SduI	GDGCHC	2 cut(s)	837, 909
SexAI	ACCWGGT	1 cut(s)	399
SfaNI	GCATC	1 cut(s)	564
SfiI	GGCCNNNNNGGCC	1 cut(s)	832
SinI	GGWCC	3 cut(s)	124, 348, 863
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	3 cut(s)	16, 354, 695
SseBI	AGGCCT	1 cut(s)	734
StuI	AGGCCT	1 cut(s)	734
StyD4I	CCNGG	7 cut(s)	113, 254, 295, 399, 428, 717, 826
TaiI	ACGT	6 cut(s)	150, 180, 347, 461, 538, 762
TaqI	TCGA	6 cut(s)	261, 288, 503, 510, 582, 765
TaqII	GACCGA	1 cut(s)	365
TasI	AATT	3 cut(s)	16, 354, 695
TfiI	GAWTC	1 cut(s)	805
Tru1I	TTAA	1 cut(s)	776
Tru9I	TTAA	1 cut(s)	776
TseFI	GTSAC	3 cut(s)	454, 870, 884
TseI	GCWGC	5 cut(s)	33, 36, 445, 448, 526
Tsp45I	GTSAC	3 cut(s)	454, 870, 884
TspDTI	ATGAA	1 cut(s)	568
TspGWI	ACGGA	2 cut(s)	460, 798
Tth111I	GACNNNGTC	1 cut(s)	224
VpaK11BI	GGWCC	3 cut(s)	124, 348, 863
XapI	RAATTY	2 cut(s)	354, 695
XmiI	GTMKAC	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.