Rmu_co8352595.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8352595.1
OG0017856
Physical Location & Seq
Reverse (-)
1 .. 1048
1048 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8352595.1_g000001.1.cds

Sequence Viewer

Length: 319 bp
tgattttgaggaagcagacgagaaggaagaggaggagggagaaggcggtggtggctgcgagtgggacgaggagatgggtgcagtggggctgcggtggctaagaatgacagggttgggtgattgggcgcatcgtgagaggaagaggaggaggagaaggaggaagaagaagaataagaagcaggaggaggaggaactgaaagcccgaatgaaccggcacgttttgtgtcggtccgggtttaggccggtccccgttctctgcaactgcaagtccggtcctggtttagctttgccggttccggtccctgtaaaagcagtgccg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

12.18

Weight (kDa)

9.03

Isoelectric Point (pI)

100.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 46, 92
AfiI CCNNNNNNNGG 1 cut(s) 238
AjnI CCWGG 1 cut(s) 275
AluBI AGCT 1 cut(s) 285
AluI AGCT 1 cut(s) 285
AoxI GGCC 1 cut(s) 240
ApeKI GCWGC 2 cut(s) 55, 89
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 4 cut(s) 229, 245, 273, 299
AsuC2I CCSGG 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 129
AvaII GGWCC 4 cut(s) 229, 245, 273, 299
BbvI GCAGC 2 cut(s) 42, 76
BccI CCATC 1 cut(s) 68
BciT130I CCWGG 1 cut(s) 277
BcnI CCSGG 1 cut(s) 233
BisI GCNGC 2 cut(s) 56, 90
BlsI GCNGC 2 cut(s) 57, 91
Bme1390I CCNGG 2 cut(s) 233, 277
Bme18I GGWCC 4 cut(s) 229, 245, 273, 299
BmgT120I GGNCC 4 cut(s) 229, 245, 273, 299
BmiI GGNNCC 3 cut(s) 247, 295, 301
BmrFI CCNGG 2 cut(s) 233, 277
BmsI GCATC 1 cut(s) 137
BpuMI CCSGG 1 cut(s) 233
BsaWI WCCGGW 2 cut(s) 270, 296
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse118I RCCGGY 3 cut(s) 211, 242, 290
BseBI CCWGG 1 cut(s) 277
BseLI CCNNNNNNNGG 1 cut(s) 238
BseRI GAGGAG 8 cut(s) 45, 48, 84, 158, 161, 164, 198, 201
BseXI GCAGC 2 cut(s) 42, 76
BsgI GTGCAG 1 cut(s) 100
BshFI GGCC 1 cut(s) 242
BsiSI CCGG 6 cut(s) 212, 232, 243, 271, 291, 297
BslFI GGGAC 3 cut(s) 78, 231, 285
BslI CCNNNNNNNGG 1 cut(s) 238
BsmFI GGGAC 3 cut(s) 78, 231, 285
BsnI GGCC 1 cut(s) 242
BspACI CCGC 2 cut(s) 46, 92
BspANI GGCC 1 cut(s) 242
BspLI GGNNCC 3 cut(s) 247, 295, 301
BsrFI RCCGGY 3 cut(s) 211, 242, 290
BssAI RCCGGY 3 cut(s) 211, 242, 290
Bst2UI CCWGG 1 cut(s) 277
Bst6I CTCTTC 2 cut(s) 22, 135
BstDEI CTNAG 1 cut(s) 99
BstHHI GCGC 1 cut(s) 128
BstMWI GCNNNNNNNGC 2 cut(s) 52, 95
BstNI CCWGG 1 cut(s) 277
BstSCI CCNGG 2 cut(s) 231, 275
BstV1I GCAGC 2 cut(s) 42, 76
BsuRI GGCC 1 cut(s) 242
BtsI GCAGTG 2 cut(s) 88, 319
BtsIMutI CAGTG 2 cut(s) 88, 319
CfoI GCGC 1 cut(s) 128
Cfr10I RCCGGY 3 cut(s) 211, 242, 290
Cfr13I GGNCC 4 cut(s) 229, 245, 273, 299
CpoI CGGWCCG 1 cut(s) 229
CspI CGGWCCG 1 cut(s) 229
CviJI RGCY 6 cut(s) 55, 89, 98, 201, 242, 285
CviKI_1 RGCY 6 cut(s) 55, 89, 98, 201, 242, 285
DdeI CTNAG 1 cut(s) 99
Eam1104I CTCTTC 2 cut(s) 22, 135
EarI CTCTTC 2 cut(s) 22, 135
Eco47I GGWCC 4 cut(s) 229, 245, 273, 299
EcoRII CCWGG 1 cut(s) 275
FaqI GGGAC 3 cut(s) 78, 231, 285
Fnu4HI GCNGC 2 cut(s) 56, 90
Fsp4HI GCNGC 2 cut(s) 56, 90
GlaI GCGC 1 cut(s) 127
GluI GCNGC 2 cut(s) 56, 90
HaeIII GGCC 1 cut(s) 242
HapII CCGG 6 cut(s) 212, 232, 243, 271, 291, 297
HhaI GCGC 1 cut(s) 128
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HpaII CCGG 6 cut(s) 212, 232, 243, 271, 291, 297
HphI GGTGA 1 cut(s) 129
Hpy188III TCNNGA 1 cut(s) 132
HpyAV CCTTC 3 cut(s) 17, 36, 148
HpyCH4IV ACGT 1 cut(s) 217
HpyCH4V TGCA 3 cut(s) 81, 259, 265
HpyF10VI GCNNNNNNNGC 2 cut(s) 52, 95
HpyF3I CTNAG 1 cut(s) 99
HpySE526I ACGT 1 cut(s) 217
HspAI GCGC 1 cut(s) 126
Lsp1109I GCAGC 2 cut(s) 42, 76
LweI GCATC 1 cut(s) 137
MaeII ACGT 1 cut(s) 217
MboII GAAGA 5 cut(s) 39, 152, 173, 176, 179
MspI CCGG 6 cut(s) 212, 232, 243, 271, 291, 297
MspR9I CCNGG 2 cut(s) 233, 277
MvaI CCWGG 1 cut(s) 277
MwoI GCNNNNNNNGC 2 cut(s) 52, 95
NciI CCSGG 1 cut(s) 233
NlaIV GGNNCC 3 cut(s) 247, 295, 301
PkrI GCNGC 2 cut(s) 57, 91
Psp6I CCWGG 1 cut(s) 275
PspGI CCWGG 1 cut(s) 275
PspN4I GGNNCC 3 cut(s) 247, 295, 301
PspPI GGNCC 4 cut(s) 229, 245, 273, 299
Rsr2I CGGWCCG 1 cut(s) 229
RsrII CGGWCCG 1 cut(s) 229
SatI GCNGC 2 cut(s) 56, 90
Sau96I GGNCC 4 cut(s) 229, 245, 273, 299
ScrFI CCNGG 2 cut(s) 233, 277
SetI ASST 2 cut(s) 220, 287
SfaNI GCATC 1 cut(s) 137
SinI GGWCC 4 cut(s) 229, 245, 273, 299
SsiI CCGC 2 cut(s) 46, 92
StyD4I CCNGG 2 cut(s) 231, 275
TaiI ACGT 1 cut(s) 220
TaqII GACCGA 1 cut(s) 217
TscAI CASTG 2 cut(s) 88, 319
TseI GCWGC 2 cut(s) 55, 89
TspDTI ATGAA 1 cut(s) 222
TspRI CASTG 2 cut(s) 88, 319
VpaK11BI GGWCC 4 cut(s) 229, 245, 273, 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.