Rw6G015490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0017856
Physical Location & Seq
Reverse (-)
29674925 .. 29687116
12192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G015490.1

Sequence Viewer

Length: 315 bp
ATGAAGTGGAAACTATCAAGAAATATACCTGGTGAAGGTAGCTCAAGGGATGGCCAAGCAAGAAAGAGGCAGAATAATGATCAACAGGCCAAGAGAGCAGCTGCTCCAAAGAGGTCTAAGAATGCCATTCCTCAGGTCATCACATCAAAAATGACATACAAAAAAAGAAAAGCAGCTGAGGAAGCATCATCGTCACATGCTGTGCAACCAAATTCAAAAGCTAGAAGGCAACCAAGTTCAAAAGCTAGAAGGCCAGCAAGTTCAGAAGGTAGGAAGCAACCAAGTTCACAAAGAATGAAGAAATCAAGGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.67

Weight (kDa)

11.9

Isoelectric Point (pI)

91.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 52
AcsI RAATTY 1 cut(s) 211
AfiI CCNNNNNNNGG 1 cut(s) 35
AgsI TTSAA 2 cut(s) 216, 240
AjnI CCWGG 1 cut(s) 28
AluBI AGCT 5 cut(s) 42, 101, 176, 221, 245
AluI AGCT 5 cut(s) 42, 101, 176, 221, 245
AoxI GGCC 3 cut(s) 52, 87, 251
ApeKI GCWGC 3 cut(s) 98, 101, 173
ApoI RAATTY 1 cut(s) 211
AsuHPI GGTGA 1 cut(s) 44
AxyI CCTNAGG 1 cut(s) 132
BalI TGGCCA 1 cut(s) 54
BbvCI CCTCAGC 1 cut(s) 177
BbvI GCAGC 3 cut(s) 88, 110, 185
BccI CCATC 1 cut(s) 44
BciT130I CCWGG 1 cut(s) 30
BclI TGATCA 1 cut(s) 79
BfaI CTAG 2 cut(s) 222, 246
BisI GCNGC 3 cut(s) 99, 102, 174
BlsI GCNGC 3 cut(s) 100, 103, 175
Bme1390I CCNGG 1 cut(s) 30
BmrFI CCNGG 1 cut(s) 30
BmsI GCATC 1 cut(s) 194
Bpu10I CCTNAGC 1 cut(s) 177
BpuEI CTTGAG 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse21I CCTNAGG 1 cut(s) 132
BseBI CCWGG 1 cut(s) 30
BseGI GGATG 1 cut(s) 55
BseLI CCNNNNNNNGG 1 cut(s) 35
BseMII CTCAG 2 cut(s) 146, 168
BseXI GCAGC 3 cut(s) 88, 110, 185
BshFI GGCC 3 cut(s) 54, 89, 253
BslI CCNNNNNNNGG 1 cut(s) 35
BsmI GAATGC 1 cut(s) 127
BsnI GGCC 3 cut(s) 54, 89, 253
Bsp143I GATC 1 cut(s) 79
BspANI GGCC 3 cut(s) 54, 89, 253
BspCNI CTCAG 2 cut(s) 145, 169
BssMI GATC 1 cut(s) 79
Bst2UI CCWGG 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 3 cut(s) 117, 132, 177
BstENI CCTNNNNNAGG 1 cut(s) 33
BstF5I GGATG 1 cut(s) 55
BstKTI GATC 1 cut(s) 82
BstMBI GATC 1 cut(s) 79
BstMWI GCNNNNNNNGC 2 cut(s) 95, 182
BstNI CCWGG 1 cut(s) 30
BstNSI RCATGY 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 28
BstV1I GCAGC 3 cut(s) 88, 110, 185
Bsu36I CCTNAGG 1 cut(s) 132
BsuRI GGCC 3 cut(s) 54, 89, 253
BtsCI GGATG 1 cut(s) 55
Cac8I GCNNGC 1 cut(s) 255
CsiI ACCWGGT 1 cut(s) 28
CviAII CATG 1 cut(s) 197
CviJI RGCY 9 cut(s) 42, 54, 89, 101, 176, 221, 245, 253, 310
CviKI_1 RGCY 9 cut(s) 42, 54, 89, 101, 176, 221, 245, 253, 310
DdeI CTNAG 3 cut(s) 117, 132, 177
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
EaeI YGGCCR 1 cut(s) 52
Eco81I CCTNAGG 1 cut(s) 132
EcoNI CCTNNNNNAGG 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 28
FaeI CATG 1 cut(s) 200
FaiI YATR 3 cut(s) 26, 157, 198
FatI CATG 1 cut(s) 196
FbaI TGATCA 1 cut(s) 79
Fnu4HI GCNGC 3 cut(s) 99, 102, 174
FokI GGATG 1 cut(s) 62
Fsp4HI GCNGC 3 cut(s) 99, 102, 174
FspBI CTAG 2 cut(s) 222, 246
GluI GCNGC 3 cut(s) 99, 102, 174
HaeIII GGCC 3 cut(s) 54, 89, 253
Hin1II CATG 1 cut(s) 200
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 1 cut(s) 287
Hpy188I TCNGA 1 cut(s) 265
Hpy188III TCNNGA 1 cut(s) 18
Hpy8I GTNNAC 1 cut(s) 287
HpyAV CCTTC 4 cut(s) 29, 219, 243, 260
HpyCH4V TGCA 1 cut(s) 205
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 182
HpyF3I CTNAG 3 cut(s) 117, 132, 177
Hsp92II CATG 1 cut(s) 200
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 1 cut(s) 79
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 5 cut(s) 15, 42, 71, 119, 267
Lsp1109I GCAGC 3 cut(s) 88, 110, 185
LweI GCATC 1 cut(s) 194
MabI ACCWGGT 1 cut(s) 28
MaeI CTAG 2 cut(s) 222, 246
MaeIII GTNAC 1 cut(s) 192
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MboII GAAGA 1 cut(s) 310
MlsI TGGCCA 1 cut(s) 54
MluCI AATT 1 cut(s) 211
MluNI TGGCCA 1 cut(s) 54
MnlI CCTC 4 cut(s) 60, 105, 141, 172
Mox20I TGGCCA 1 cut(s) 54
MscI TGGCCA 1 cut(s) 54
Msp20I TGGCCA 1 cut(s) 54
MspA1I CMGCKG 2 cut(s) 101, 176
MspR9I CCNGG 1 cut(s) 30
Mva1269I GAATGC 1 cut(s) 127
MvaI CCWGG 1 cut(s) 30
MwoI GCNNNNNNNGC 2 cut(s) 95, 182
NdeII GATC 1 cut(s) 79
NlaIII CATG 1 cut(s) 200
NmuCI GTSAC 1 cut(s) 192
NspI RCATGY 1 cut(s) 200
PctI GAATGC 1 cut(s) 127
PkrI GCNGC 3 cut(s) 100, 103, 175
Psp6I CCWGG 1 cut(s) 28
PspGI CCWGG 1 cut(s) 28
PvuII CAGCTG 2 cut(s) 101, 176
SatI GCNGC 3 cut(s) 99, 102, 174
Sau3AI GATC 1 cut(s) 79
ScrFI CCNGG 1 cut(s) 30
SexAI ACCWGGT 1 cut(s) 28
SfaNI GCATC 1 cut(s) 194
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
Sse9I AATT 1 cut(s) 211
SspMI CTAG 2 cut(s) 222, 246
StyD4I CCNGG 1 cut(s) 28
TasI AATT 1 cut(s) 211
TseFI GTSAC 1 cut(s) 192
TseI GCWGC 3 cut(s) 98, 101, 173
Tsp45I GTSAC 1 cut(s) 192
TspDTI ATGAA 2 cut(s) 17, 311
XagI CCTNNNNNAGG 1 cut(s) 33
XapI RAATTY 1 cut(s) 211
XceI RCATGY 1 cut(s) 200
XspI CTAG 2 cut(s) 222, 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.