Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001009.1

Orthogroup ID

OG0017856

Physical Location & Seq

Genomic Coordinates Reverse (-)

58115 .. 59015

Gene Structure 901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001009.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atgaccgaaaatccgaaaaaccggaagaaacggatccggacgggacggtccgggtcggcttttacactgaaaattactgttttcgcagacgagaaggaagaggaggagggagaaggcggtggtggctgcgagtgggacgaggagatgggtgcggtggggctacggtggctgagaatgacggggttgggtgattgggcgcatcgtgagaggagaaggaggaggaggaagaggaagaagaagaataagaagcaggacgaggaggaactgaaagcccggatgaactggcccgttttgtgtcgatctgggttgaggccggtccccgttctctgcatctgcaagtccggttcgggtttagctttgccggttccggtcccagtccctgtaaagcagtgccagtctgggaccgtgcccagccctagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

15.81

Weight (kDa)

10.03

Isoelectric Point (pI)

91.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017856)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8352595.1_g000001 Rmu_sc0001009.1_g000018 Rmu_sc0002723.1_g000002 Rmu_sc0003069.1_g000015
rosa_samantha	Rh1AG161900 Rh1CG151200 Rh1DG206000 Rh5CG268400 Rh5CG348400 Rh6AG220900 Rh6CG409500
rosa_wichuraiana	Rw6G015490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	46
AccIII	TCCGGA	1 cut(s)	36
AciI	CCGC	2 cut(s)	117, 152
AclWI	GGATC	2 cut(s)	28, 41
AluBI	AGCT	1 cut(s)	356
AluI	AGCT	1 cut(s)	356
AlwI	GGATC	2 cut(s)	28, 41
AlwNI	CAGNNNCTG	1 cut(s)	380
Aor13HI	TCCGGA	1 cut(s)	36
AoxI	GGCC	2 cut(s)	284, 311
ApeKI	GCWGC	1 cut(s)	126
AspLEI	GCGC	1 cut(s)	199
AspS9I	GGNCC	5 cut(s)	48, 285, 316, 370, 402
AsuC2I	CCSGG	2 cut(s)	52, 274
AsuHPI	GGTGA	1 cut(s)	200
AvaII	GGWCC	4 cut(s)	48, 316, 370, 402
BaeGI	GKGCMC	1 cut(s)	411
BamHI	GGATCC	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	113
BccI	CCATC	1 cut(s)	139
BcnI	CCSGG	2 cut(s)	52, 274
BfaI	CTAG	1 cut(s)	417
BisI	GCNGC	1 cut(s)	127
BlsI	GCNGC	1 cut(s)	128
Bme1390I	CCNGG	2 cut(s)	52, 274
Bme18I	GGWCC	4 cut(s)	48, 316, 370, 402
BmgT120I	GGNCC	5 cut(s)	48, 285, 316, 370, 402
BmiI	GGNNCC	5 cut(s)	35, 318, 366, 372, 403
BmrFI	CCNGG	2 cut(s)	52, 274
BmrI	ACTGGG	1 cut(s)	368
BmsI	GCATC	2 cut(s)	208, 339
BmuI	ACTGGG	1 cut(s)	368
BpuMI	CCSGG	2 cut(s)	52, 274
BsaWI	WCCGGW	4 cut(s)	21, 36, 341, 367
Bse118I	RCCGGY	2 cut(s)	313, 361
Bse1I	ACTGG	3 cut(s)	287, 374, 394
BseAI	TCCGGA	1 cut(s)	36
BseGI	GGATG	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	3 cut(s)	287, 374, 394
BseRI	GAGGAG	7 cut(s)	116, 119, 155, 223, 232, 235, 272
BseSI	GKGCMC	1 cut(s)	411
BseXI	GCAGC	1 cut(s)	113
BseYI	CCCAGC	1 cut(s)	410
BshFI	GGCC	2 cut(s)	286, 313
BsiSI	CCGG	8 cut(s)	22, 37, 51, 274, 314, 342, 362, 368
BslFI	GGGAC	6 cut(s)	57, 149, 302, 356, 362, 415
BsmFI	GGGAC	6 cut(s)	57, 149, 302, 356, 362, 415
BsnI	GGCC	2 cut(s)	286, 313
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp13I	TCCGGA	1 cut(s)	36
Bsp143I	GATC	2 cut(s)	33, 299
BspACI	CCGC	2 cut(s)	117, 152
BspANI	GGCC	2 cut(s)	286, 313
BspCNI	CTCAG	1 cut(s)	162
BspEI	TCCGGA	1 cut(s)	36
BspLI	GGNNCC	5 cut(s)	35, 318, 366, 372, 403
BspPI	GGATC	2 cut(s)	28, 41
BsrFI	RCCGGY	2 cut(s)	313, 361
BsrI	ACTGG	3 cut(s)	287, 374, 394
BssAI	RCCGGY	2 cut(s)	313, 361
BssMI	GATC	2 cut(s)	33, 299
Bst4CI	ACNGT	4 cut(s)	48, 79, 165, 406
Bst6I	CTCTTC	2 cut(s)	93, 221
BstDEI	CTNAG	1 cut(s)	170
BstF5I	GGATG	1 cut(s)	282
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	2 cut(s)	36, 302
BstMBI	GATC	2 cut(s)	33, 299
BstMWI	GCNNNNNNNGC	2 cut(s)	123, 166
BstSCI	CCNGG	2 cut(s)	50, 272
BstSLI	GKGCMC	1 cut(s)	411
BstV1I	GCAGC	1 cut(s)	113
BstX2I	RGATCY	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	33
BsuRI	GGCC	2 cut(s)	286, 313
BtsCI	GGATG	1 cut(s)	282
BtsI	GCAGTG	1 cut(s)	395
BtsIMutI	CAGTG	2 cut(s)	65, 395
CaiI	CAGNNNCTG	1 cut(s)	380
CfoI	GCGC	1 cut(s)	199
Cfr10I	RCCGGY	2 cut(s)	313, 361
Cfr13I	GGNCC	5 cut(s)	48, 285, 316, 370, 402
CpoI	CGGWCCG	1 cut(s)	48
CspI	CGGWCCG	1 cut(s)	48
CviJI	RGCY	9 cut(s)	59, 126, 160, 169, 272, 286, 313, 356, 414
CviKI_1	RGCY	9 cut(s)	59, 126, 160, 169, 272, 286, 313, 356, 414
DdeI	CTNAG	1 cut(s)	170
DpnI	GATC	2 cut(s)	35, 301
DpnII	GATC	2 cut(s)	33, 299
DrdI	GACNNNNNNGTC	1 cut(s)	46
DseDI	GACNNNNNNGTC	1 cut(s)	46
Eam1104I	CTCTTC	2 cut(s)	93, 221
EarI	CTCTTC	2 cut(s)	93, 221
Eco47I	GGWCC	4 cut(s)	48, 316, 370, 402
FaqI	GGGAC	6 cut(s)	57, 149, 302, 356, 362, 415
Fnu4HI	GCNGC	1 cut(s)	127
FokI	GGATG	1 cut(s)	289
Fsp4HI	GCNGC	1 cut(s)	127
FspBI	CTAG	1 cut(s)	417
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	1 cut(s)	127
GsaI	CCCAGC	1 cut(s)	414
HaeIII	GGCC	2 cut(s)	286, 313
HapII	CCGG	8 cut(s)	22, 37, 51, 274, 314, 342, 362, 368
HhaI	GCGC	1 cut(s)	199
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HpaII	CCGG	8 cut(s)	22, 37, 51, 274, 314, 342, 362, 368
HphI	GGTGA	1 cut(s)	200
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	2 cut(s)	37, 203
HpyAV	CCTTC	3 cut(s)	88, 107, 207
HpyCH4III	ACNGT	4 cut(s)	48, 79, 165, 406
HpyCH4V	TGCA	2 cut(s)	330, 336
HpyF10VI	GCNNNNNNNGC	2 cut(s)	123, 166
HpyF3I	CTNAG	1 cut(s)	170
HspAI	GCGC	1 cut(s)	197
Kpn2I	TCCGGA	1 cut(s)	36
Kzo9I	GATC	2 cut(s)	33, 299
Lsp1109I	GCAGC	1 cut(s)	113
LweI	GCATC	2 cut(s)	208, 339
MaeI	CTAG	1 cut(s)	417
MalI	GATC	2 cut(s)	35, 301
MboI	GATC	2 cut(s)	33, 299
MboII	GAAGA	6 cut(s)	37, 110, 238, 244, 247, 250
MflI	RGATCY	1 cut(s)	33
MhlI	GDGCHC	1 cut(s)	411
MluCI	AATT	1 cut(s)	72
MroI	TCCGGA	1 cut(s)	36
MseI	TTAA	1 cut(s)	421
MspI	CCGG	8 cut(s)	22, 37, 51, 274, 314, 342, 362, 368
MspR9I	CCNGG	2 cut(s)	52, 274
MwoI	GCNNNNNNNGC	2 cut(s)	123, 166
NciI	CCSGG	2 cut(s)	52, 274
NdeII	GATC	2 cut(s)	33, 299
NlaIV	GGNNCC	5 cut(s)	35, 318, 366, 372, 403
PkrI	GCNGC	1 cut(s)	128
PspFI	CCCAGC	1 cut(s)	410
PspN4I	GGNNCC	5 cut(s)	35, 318, 366, 372, 403
PspPI	GGNCC	5 cut(s)	48, 285, 316, 370, 402
PstNI	CAGNNNCTG	1 cut(s)	380
PsuI	RGATCY	1 cut(s)	33
Rsr2I	CGGWCCG	1 cut(s)	48
RsrII	CGGWCCG	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	421
SatI	GCNGC	1 cut(s)	127
Sau3AI	GATC	2 cut(s)	33, 299
Sau96I	GGNCC	5 cut(s)	48, 285, 316, 370, 402
ScrFI	CCNGG	2 cut(s)	52, 274
SduI	GDGCHC	1 cut(s)	411
SetI	ASST	1 cut(s)	358
SfaNI	GCATC	2 cut(s)	208, 339
SinI	GGWCC	4 cut(s)	48, 316, 370, 402
Sse9I	AATT	1 cut(s)	72
SsiI	CCGC	2 cut(s)	117, 152
SspMI	CTAG	1 cut(s)	417
StyD4I	CCNGG	2 cut(s)	50, 272
TaaI	ACNGT	4 cut(s)	48, 79, 165, 406
TaqI	TCGA	1 cut(s)	298
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	1 cut(s)	72
Tru1I	TTAA	1 cut(s)	421
Tru9I	TTAA	1 cut(s)	421
TscAI	CASTG	2 cut(s)	72, 395
TseI	GCWGC	1 cut(s)	126
TspDTI	ATGAA	1 cut(s)	293
TspGWI	ACGGA	1 cut(s)	46
TspRI	CASTG	2 cut(s)	72, 395
VpaK11BI	GGWCC	4 cut(s)	48, 316, 370, 402
XspI	CTAG	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.