Rh6AG220900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0017856
Physical Location & Seq
Forward (+)
39769221 .. 39772449
3229 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG220900.1

Sequence Viewer

Length: 573 bp
ATGGAAAAGACTACAGGGATTGGTGTTAGGAGTAGTGTGAATGGCAGGAGGGATGATTGGATAATTAATGACGATGGTGTAAATGAAGGTGTGCTTGGTGATGGGTTGAATGAAGTAGTAAAGAATGATAGTGAGGTGGGTAGAGGTCTGTGTGAAGTAGTAAATGAAGGTAGTGTGGTGGAGAATAAAGAAGGGCATGAAGGTAGCTCAAGGGATGGCCAAGCAAAAAAGCGGCAGAATACTCAACAGGCCAAGAGAGCTACTGCTCCAAAGAGGTCTAAGAATGCCATTCCTCAAGTCATCACGTCAAAAATGTCATACAAAAAAAGAAAAGCAGCTGAGGAAGCATCATCGTCACATGCTGTGCCACCAAGTTCAAAAGCTAGAAAGCAACCAAGTTCAAAAGCTAGAAGGCAACCAAGTTCAGATGCTCAGAAGCAACCAAGATCACAAGGAACGAAGGAACCAAGCACACAAGCCACTCAACAGCAAACTTCACAAGTTATAGAGCAGGTCCAGACTTCACAGATTATGCAACAGAGTCAGACATCCTCTGAATGGGCAAGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

20.69

Weight (kDa)

9.71

Isoelectric Point (pI)

70.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 502
AciI CCGC 1 cut(s) 232
AcoI YGGCCR 1 cut(s) 217
AfiI CCNNNNNNNGG 1 cut(s) 558
AgsI TTSAA 3 cut(s) 109, 378, 402
AjiI CACGTC 1 cut(s) 306
AjuI GAANNNNNNNTTGG 2 cut(s) 78, 110
AluBI AGCT 6 cut(s) 207, 260, 338, 383, 407, 567
AluI AGCT 6 cut(s) 207, 260, 338, 383, 407, 567
AoxI GGCC 2 cut(s) 217, 249
ApeKI GCWGC 1 cut(s) 335
AseI ATTAAT 1 cut(s) 66
AspS9I GGNCC 1 cut(s) 514
AsuHPI GGTGA 1 cut(s) 110
AvaII GGWCC 1 cut(s) 514
BalI TGGCCA 1 cut(s) 219
BbvCI CCTCAGC 1 cut(s) 339
BbvI GCAGC 1 cut(s) 347
BccI CCATC 3 cut(s) 68, 95, 209
BfaI CTAG 2 cut(s) 384, 408
BfmI CTRYAG 1 cut(s) 12
BfuAI ACCTGC 1 cut(s) 502
BisI GCNGC 2 cut(s) 233, 336
BlsI GCNGC 2 cut(s) 234, 337
Bme18I GGWCC 1 cut(s) 514
BmgBI CACGTC 1 cut(s) 306
BmgT120I GGNCC 1 cut(s) 514
BmiI GGNNCC 1 cut(s) 465
BmsI GCATC 2 cut(s) 356, 418
Bpu10I CCTNAGC 1 cut(s) 339
BpuEI CTTGAG 2 cut(s) 193, 279
Bsc4I CCNNNNNNNGG 1 cut(s) 558
BseGI GGATG 3 cut(s) 58, 220, 548
BseLI CCNNNNNNNGG 1 cut(s) 558
BseMII CTCAG 2 cut(s) 330, 446
BseXI GCAGC 1 cut(s) 347
BshFI GGCC 2 cut(s) 219, 251
BslI CCNNNNNNNGG 1 cut(s) 558
BsmI GAATGC 1 cut(s) 289
BsnI GGCC 2 cut(s) 219, 251
Bsp143I GATC 1 cut(s) 446
BspACI CCGC 1 cut(s) 232
BspANI GGCC 2 cut(s) 219, 251
BspCNI CTCAG 2 cut(s) 331, 445
BspLI GGNNCC 1 cut(s) 465
BspMI ACCTGC 1 cut(s) 502
BssMI GATC 1 cut(s) 446
BstC8I GCNNGC 1 cut(s) 565
BstDEI CTNAG 3 cut(s) 279, 339, 432
BstF5I GGATG 3 cut(s) 58, 220, 548
BstKTI GATC 1 cut(s) 449
BstMBI GATC 1 cut(s) 446
BstMWI GCNNNNNNNGC 2 cut(s) 257, 344
BstNSI RCATGY 1 cut(s) 362
BstSFI CTRYAG 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 347
BsuRI GGCC 2 cut(s) 219, 251
BtrI CACGTC 1 cut(s) 306
BtsCI GGATG 3 cut(s) 58, 220, 548
BveI ACCTGC 1 cut(s) 502
Cac8I GCNNGC 1 cut(s) 565
Cfr13I GGNCC 1 cut(s) 514
CviAII CATG 2 cut(s) 197, 359
CviJI RGCY 9 cut(s) 207, 219, 251, 260, 338, 383, 407, 479, 567
CviKI_1 RGCY 9 cut(s) 207, 219, 251, 260, 338, 383, 407, 479, 567
DdeI CTNAG 3 cut(s) 279, 339, 432
DpnI GATC 1 cut(s) 448
DpnII GATC 1 cut(s) 446
EaeI YGGCCR 1 cut(s) 217
Eco47I GGWCC 1 cut(s) 514
FaeI CATG 2 cut(s) 200, 362
FaiI YATR 5 cut(s) 198, 319, 360, 506, 533
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FatI CATG 2 cut(s) 196, 358
Fnu4HI GCNGC 2 cut(s) 233, 336
FokI GGATG 3 cut(s) 65, 227, 535
Fsp4HI GCNGC 2 cut(s) 233, 336
FspBI CTAG 2 cut(s) 384, 408
GluI GCNGC 2 cut(s) 233, 336
HaeIII GGCC 2 cut(s) 219, 251
Hin1II CATG 2 cut(s) 200, 362
HindIII AAGCTT 1 cut(s) 565
HinfI GANTC 1 cut(s) 541
HphI GGTGA 1 cut(s) 110
Hpy188I TCNGA 4 cut(s) 427, 435, 546, 556
Hpy188III TCNNGA 1 cut(s) 517
HpyAV CCTTC 6 cut(s) 80, 161, 185, 194, 405, 454
HpyCH4IV ACGT 1 cut(s) 305
HpyCH4V TGCA 1 cut(s) 535
HpyF10VI GCNNNNNNNGC 2 cut(s) 257, 344
HpyF3I CTNAG 3 cut(s) 279, 339, 432
HpySE526I ACGT 1 cut(s) 305
Hsp92II CATG 2 cut(s) 200, 362
Kzo9I GATC 1 cut(s) 446
LmnI GCTCC 1 cut(s) 271
LpnPI CCDG 4 cut(s) 31, 233, 497, 530
Lsp1109I GCAGC 1 cut(s) 347
LweI GCATC 2 cut(s) 356, 418
MaeI CTAG 2 cut(s) 384, 408
MaeII ACGT 1 cut(s) 305
MaeIII GTNAC 1 cut(s) 354
MalI GATC 1 cut(s) 448
MboI GATC 1 cut(s) 446
MlsI TGGCCA 1 cut(s) 219
MluCI AATT 1 cut(s) 63
MluNI TGGCCA 1 cut(s) 219
MlyI GAGTC 1 cut(s) 550
MnlI CCTC 7 cut(s) 42, 127, 137, 267, 303, 334, 562
Mox20I TGGCCA 1 cut(s) 219
MscI TGGCCA 1 cut(s) 219
MseI TTAA 1 cut(s) 66
Msp20I TGGCCA 1 cut(s) 219
MspA1I CMGCKG 1 cut(s) 338
Mva1269I GAATGC 1 cut(s) 289
MwoI GCNNNNNNNGC 2 cut(s) 257, 344
NdeII GATC 1 cut(s) 446
NlaIII CATG 2 cut(s) 200, 362
NlaIV GGNNCC 1 cut(s) 465
NmuCI GTSAC 1 cut(s) 354
NspI RCATGY 1 cut(s) 362
PctI GAATGC 1 cut(s) 289
PkrI GCNGC 2 cut(s) 234, 337
PleI GAGTC 1 cut(s) 549
PpsI GAGTC 1 cut(s) 549
PshBI ATTAAT 1 cut(s) 66
PspN4I GGNNCC 1 cut(s) 465
PspPI GGNCC 1 cut(s) 514
PvuII CAGCTG 1 cut(s) 338
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 2 cut(s) 233, 336
Sau3AI GATC 1 cut(s) 446
Sau96I GGNCC 1 cut(s) 514
SchI GAGTC 1 cut(s) 550
SfaNI GCATC 2 cut(s) 356, 418
SfcI CTRYAG 1 cut(s) 12
SinI GGWCC 1 cut(s) 514
SmlI CTYRAG 2 cut(s) 208, 294
SmoI CTYRAG 2 cut(s) 208, 294
Sse9I AATT 1 cut(s) 63
SsiI CCGC 1 cut(s) 232
SspMI CTAG 2 cut(s) 384, 408
TaiI ACGT 1 cut(s) 308
TasI AATT 1 cut(s) 63
TauI GCSGC 1 cut(s) 235
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TseFI GTSAC 1 cut(s) 354
TseI GCWGC 1 cut(s) 335
Tsp45I GTSAC 1 cut(s) 354
TspDTI ATGAA 4 cut(s) 99, 126, 180, 213
VpaK11BI GGWCC 1 cut(s) 514
VspI ATTAAT 1 cut(s) 66
XceI RCATGY 1 cut(s) 362
XspI CTAG 2 cut(s) 384, 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.