Rh1AG161900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0017856
Physical Location & Seq
Reverse (-)
31010394 .. 31026738
16345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG161900.1

Sequence Viewer

Length: 417 bp
ATGGGTGCGATGGGGCTGCGGTGGCTGAGAGTGACGGGGTTGGGTGATTGGGCGCATCGTGAGGGTGAAGGTAGCTCAAGGGATGGCCAAGCAAAAAAGCGGGAGAATACTCAACAGGCCAAGAGAGCTGCTACTCCAAAGAGGTCTAAGAATGCCATTCCTCAGGTCATCACATCAAAAATGTCATACAAAAAAAGAAAAGCAGCTGAGGAAGCATCATCGTCACATGCTGTGCCACCAAGTTCAAAAGCTAGAAGGCAACCAAATTCAGATGCTCAGAAGCAACCAAGATCACAAGGAACGAAGCAACCAAGCACACAAGCCACTCAACAGCAAACTTCACAAGTTATAGAGCAGGTCCAGACTTCACAGATTATGCAACAGAGTCAGACATCCTCTGAATGGGCAAGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.25

Weight (kDa)

10.83

Isoelectric Point (pI)

78.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 346
AciI CCGC 2 cut(s) 19, 100
AcoI YGGCCR 1 cut(s) 85
AcsI RAATTY 1 cut(s) 265
AfiI CCNNNNNNNGG 1 cut(s) 402
AgsI TTSAA 1 cut(s) 246
AluBI AGCT 5 cut(s) 75, 128, 206, 251, 411
AluI AGCT 5 cut(s) 75, 128, 206, 251, 411
AoxI GGCC 2 cut(s) 85, 117
ApeKI GCWGC 3 cut(s) 16, 128, 203
ApoI RAATTY 1 cut(s) 265
AspLEI GCGC 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 358
AsuHPI GGTGA 2 cut(s) 56, 77
AvaII GGWCC 1 cut(s) 358
AxyI CCTNAGG 1 cut(s) 162
BalI TGGCCA 1 cut(s) 87
BbvCI CCTCAGC 1 cut(s) 207
BbvI GCAGC 3 cut(s) 3, 115, 215
BccI CCATC 2 cut(s) 4, 77
BcgI CGANNNNNNTGC 1 cut(s) 32
BfaI CTAG 1 cut(s) 252
BfuAI ACCTGC 1 cut(s) 346
BisI GCNGC 3 cut(s) 17, 129, 204
BlsI GCNGC 3 cut(s) 18, 130, 205
Bme18I GGWCC 1 cut(s) 358
BmgT120I GGNCC 1 cut(s) 358
BmsI GCATC 3 cut(s) 64, 224, 262
Bpu10I CCTNAGC 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 61
Bsc4I CCNNNNNNNGG 1 cut(s) 402
Bse21I CCTNAGG 1 cut(s) 162
BseGI GGATG 2 cut(s) 88, 392
BseLI CCNNNNNNNGG 1 cut(s) 402
BseMII CTCAG 4 cut(s) 17, 176, 198, 290
BseXI GCAGC 3 cut(s) 3, 115, 215
BshFI GGCC 2 cut(s) 87, 119
BslI CCNNNNNNNGG 1 cut(s) 402
BsmI GAATGC 1 cut(s) 157
BsnI GGCC 2 cut(s) 87, 119
Bsp143I GATC 1 cut(s) 290
BspACI CCGC 2 cut(s) 19, 100
BspANI GGCC 2 cut(s) 87, 119
BspCNI CTCAG 4 cut(s) 18, 175, 199, 289
BspMI ACCTGC 1 cut(s) 346
BssMI GATC 1 cut(s) 290
BstC8I GCNNGC 1 cut(s) 409
BstDEI CTNAG 5 cut(s) 26, 147, 162, 207, 276
BstF5I GGATG 2 cut(s) 88, 392
BstHHI GCGC 1 cut(s) 55
BstKTI GATC 1 cut(s) 293
BstMBI GATC 1 cut(s) 290
BstMWI GCNNNNNNNGC 3 cut(s) 22, 125, 212
BstNSI RCATGY 1 cut(s) 230
BstV1I GCAGC 3 cut(s) 3, 115, 215
Bsu36I CCTNAGG 1 cut(s) 162
BsuRI GGCC 2 cut(s) 87, 119
BtgZI GCGATG 1 cut(s) 23
BtsCI GGATG 2 cut(s) 88, 392
BveI ACCTGC 1 cut(s) 346
Cac8I GCNNGC 1 cut(s) 409
CfoI GCGC 1 cut(s) 55
Cfr13I GGNCC 1 cut(s) 358
CviAII CATG 1 cut(s) 227
DdeI CTNAG 5 cut(s) 26, 147, 162, 207, 276
DpnI GATC 1 cut(s) 292
DpnII GATC 1 cut(s) 290
EaeI YGGCCR 1 cut(s) 85
Eco47I GGWCC 1 cut(s) 358
Eco81I CCTNAGG 1 cut(s) 162
FaeI CATG 1 cut(s) 230
FaiI YATR 4 cut(s) 187, 228, 350, 377
FatI CATG 1 cut(s) 226
FauI CCCGC 1 cut(s) 93
Fnu4HI GCNGC 3 cut(s) 17, 129, 204
FokI GGATG 2 cut(s) 95, 379
Fsp4HI GCNGC 3 cut(s) 17, 129, 204
FspBI CTAG 1 cut(s) 252
GlaI GCGC 1 cut(s) 54
GluI GCNGC 3 cut(s) 17, 129, 204
HaeIII GGCC 2 cut(s) 87, 119
HhaI GCGC 1 cut(s) 55
Hin1II CATG 1 cut(s) 230
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HindIII AAGCTT 1 cut(s) 409
HinfI GANTC 1 cut(s) 385
HphI GGTGA 2 cut(s) 56, 77
Hpy188I TCNGA 4 cut(s) 271, 279, 390, 400
Hpy188III TCNNGA 2 cut(s) 59, 361
HpyAV CCTTC 2 cut(s) 62, 249
HpyCH4V TGCA 1 cut(s) 379
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 125, 212
HpyF3I CTNAG 5 cut(s) 26, 147, 162, 207, 276
Hsp92II CATG 1 cut(s) 230
HspAI GCGC 1 cut(s) 53
Kzo9I GATC 1 cut(s) 290
LpnPI CCDG 4 cut(s) 101, 149, 341, 374
Lsp1109I GCAGC 3 cut(s) 3, 115, 215
LweI GCATC 3 cut(s) 64, 224, 262
MaeI CTAG 1 cut(s) 252
MaeIII GTNAC 2 cut(s) 31, 222
MalI GATC 1 cut(s) 292
MboI GATC 1 cut(s) 290
MlsI TGGCCA 1 cut(s) 87
MluCI AATT 1 cut(s) 265
MluNI TGGCCA 1 cut(s) 87
MlyI GAGTC 1 cut(s) 394
MnlI CCTC 5 cut(s) 55, 135, 171, 202, 406
Mox20I TGGCCA 1 cut(s) 87
MscI TGGCCA 1 cut(s) 87
Msp20I TGGCCA 1 cut(s) 87
MspA1I CMGCKG 1 cut(s) 206
Mva1269I GAATGC 1 cut(s) 157
MwoI GCNNNNNNNGC 3 cut(s) 22, 125, 212
NdeII GATC 1 cut(s) 290
NlaIII CATG 1 cut(s) 230
NmuCI GTSAC 2 cut(s) 31, 222
NspI RCATGY 1 cut(s) 230
PctI GAATGC 1 cut(s) 157
PkrI GCNGC 3 cut(s) 18, 130, 205
PleI GAGTC 1 cut(s) 393
PpsI GAGTC 1 cut(s) 393
PspPI GGNCC 1 cut(s) 358
PvuII CAGCTG 1 cut(s) 206
SatI GCNGC 3 cut(s) 17, 129, 204
Sau3AI GATC 1 cut(s) 290
Sau96I GGNCC 1 cut(s) 358
SchI GAGTC 1 cut(s) 394
SetI ASST 9 cut(s) 73, 77, 130, 146, 168, 208, 253, 360, 413
SfaNI GCATC 3 cut(s) 64, 224, 262
SinI GGWCC 1 cut(s) 358
SmlI CTYRAG 1 cut(s) 76
SmoI CTYRAG 1 cut(s) 76
Sse9I AATT 1 cut(s) 265
SsiI CCGC 2 cut(s) 19, 100
SspMI CTAG 1 cut(s) 252
TasI AATT 1 cut(s) 265
TseFI GTSAC 2 cut(s) 31, 222
TseI GCWGC 3 cut(s) 16, 128, 203
Tsp45I GTSAC 2 cut(s) 31, 222
VpaK11BI GGWCC 1 cut(s) 358
XapI RAATTY 1 cut(s) 265
XceI RCATGY 1 cut(s) 230
XspI CTAG 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.