Rh5CG348400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
40111427 .. 40111759
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG348400.1

Sequence Viewer

Length: 333 bp
ATGTTGCAGGCCAAGAGAGCAGCTGCTCCAAAGAGGTCTAAGAATGCCATTCCTCAGGTCATCACATCAAAAATGACATACAAAAAAAGAAAAGCAGCTGAGGAAGCATCATCGTCACATGCTGTGCAACCAAATTCAAAAGCTAGAAGGCAACCAAGTTCAAAAGCTAGAAGGCTAGCAAGTTCAGAAGGTAGGAAGCAACCAAGTTCACAAAGAAGGAAGAAACCAAGTACACAAGCCACTCAACAGCCAAATTCACAAGTTATGGAGCAGTGCCAGACTTCACAGATTACTCAACAGAGCCAGACATCCTCTGAATGGGCAGGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.21

Weight (kDa)

11.5

Isoelectric Point (pI)

88.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 133, 253
AfaI GTAC 1 cut(s) 232
AfiI CCNNNNNNNGG 1 cut(s) 318
AgsI TTSAA 2 cut(s) 138, 162
AluBI AGCT 4 cut(s) 23, 98, 143, 167
AluI AGCT 4 cut(s) 23, 98, 143, 167
AoxI GGCC 1 cut(s) 9
ApeKI GCWGC 3 cut(s) 20, 23, 95
ApoI RAATTY 2 cut(s) 133, 253
AsuNHI GCTAGC 1 cut(s) 175
AxyI CCTNAGG 1 cut(s) 54
BbvCI CCTCAGC 1 cut(s) 99
BbvI GCAGC 3 cut(s) 10, 32, 107
BfaI CTAG 3 cut(s) 144, 168, 176
BisI GCNGC 3 cut(s) 21, 24, 96
BlsI GCNGC 3 cut(s) 22, 25, 97
BmsI GCATC 1 cut(s) 116
BmtI GCTAGC 1 cut(s) 179
Bpu10I CCTNAGC 1 cut(s) 99
Bsc4I CCNNNNNNNGG 1 cut(s) 318
Bse21I CCTNAGG 1 cut(s) 54
BseGI GGATG 1 cut(s) 308
BseLI CCNNNNNNNGG 1 cut(s) 318
BseMII CTCAG 2 cut(s) 68, 90
BseXI GCAGC 3 cut(s) 10, 32, 107
BshFI GGCC 1 cut(s) 11
BslI CCNNNNNNNGG 1 cut(s) 318
BsmI GAATGC 1 cut(s) 49
BsnI GGCC 1 cut(s) 11
BspANI GGCC 1 cut(s) 11
BspCNI CTCAG 2 cut(s) 67, 91
BspOI GCTAGC 1 cut(s) 179
BstC8I GCNNGC 3 cut(s) 9, 177, 325
BstDEI CTNAG 3 cut(s) 39, 54, 99
BstF5I GGATG 1 cut(s) 308
BstMWI GCNNNNNNNGC 2 cut(s) 17, 104
BstNSI RCATGY 1 cut(s) 122
BstV1I GCAGC 3 cut(s) 10, 32, 107
Bsu36I CCTNAGG 1 cut(s) 54
BsuRI GGCC 1 cut(s) 11
BtsCI GGATG 1 cut(s) 308
BtsI GCAGTG 1 cut(s) 278
BtsIMutI CAGTG 1 cut(s) 278
Cac8I GCNNGC 3 cut(s) 9, 177, 325
Csp6I GTAC 1 cut(s) 231
CviAII CATG 1 cut(s) 119
CviQI GTAC 1 cut(s) 231
DdeI CTNAG 3 cut(s) 39, 54, 99
Eco81I CCTNAGG 1 cut(s) 54
FaeI CATG 1 cut(s) 122
FaiI YATR 3 cut(s) 79, 120, 266
FatI CATG 1 cut(s) 118
Fnu4HI GCNGC 3 cut(s) 21, 24, 96
FokI GGATG 1 cut(s) 295
Fsp4HI GCNGC 3 cut(s) 21, 24, 96
FspBI CTAG 3 cut(s) 144, 168, 176
GluI GCNGC 3 cut(s) 21, 24, 96
HaeIII GGCC 1 cut(s) 11
Hin1II CATG 1 cut(s) 122
Hpy166II GTNNAC 2 cut(s) 209, 233
Hpy188I TCNGA 2 cut(s) 187, 316
Hpy8I GTNNAC 2 cut(s) 209, 233
HpyAV CCTTC 4 cut(s) 141, 165, 182, 210
HpyCH4V TGCA 2 cut(s) 7, 127
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 104
HpyF3I CTNAG 3 cut(s) 39, 54, 99
Hsp92II CATG 1 cut(s) 122
LmnI GCTCC 2 cut(s) 31, 268
LpnPI CCDG 4 cut(s) 41, 290, 309, 317
Lsp1109I GCAGC 3 cut(s) 10, 32, 107
LweI GCATC 1 cut(s) 116
MaeI CTAG 3 cut(s) 144, 168, 176
MaeIII GTNAC 1 cut(s) 114
MboII GAAGA 1 cut(s) 232
MluCI AATT 2 cut(s) 133, 253
MnlI CCTC 4 cut(s) 27, 63, 94, 322
MspA1I CMGCKG 2 cut(s) 23, 98
Mva1269I GAATGC 1 cut(s) 49
MwoI GCNNNNNNNGC 2 cut(s) 17, 104
NheI GCTAGC 1 cut(s) 175
NlaIII CATG 1 cut(s) 122
NmuCI GTSAC 1 cut(s) 114
NspI RCATGY 1 cut(s) 122
PctI GAATGC 1 cut(s) 49
PkrI GCNGC 3 cut(s) 22, 25, 97
PvuII CAGCTG 2 cut(s) 23, 98
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
SatI GCNGC 3 cut(s) 21, 24, 96
SetI ASST 7 cut(s) 25, 38, 60, 100, 145, 169, 193
SfaNI GCATC 1 cut(s) 116
Sse9I AATT 2 cut(s) 133, 253
SspMI CTAG 3 cut(s) 144, 168, 176
TasI AATT 2 cut(s) 133, 253
TatI WGTACW 1 cut(s) 230
TscAI CASTG 1 cut(s) 278
TseFI GTSAC 1 cut(s) 114
TseI GCWGC 3 cut(s) 20, 23, 95
Tsp45I GTSAC 1 cut(s) 114
TspRI CASTG 1 cut(s) 278
XapI RAATTY 2 cut(s) 133, 253
XceI RCATGY 1 cut(s) 122
XspI CTAG 3 cut(s) 144, 168, 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.