Rh1DG206000

Rab11 family GTPase. Source PGD

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0017856
Physical Location & Seq
Reverse (-)
40250301 .. 40278097
27797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG206000.1

Sequence Viewer

Length: 471 bp
ATGTCTCAAGTCGCCTCTGTGGCTCTCTCCCTTACAATCGGTCTTCCTCACCTCTGCAGCTCTTCCTCTCAGCTCTCACTCTTGCCCCTCGTGGTCTCTTGCGTCTCTGTCCCAGCCTCCCAGGTACACCAAGTATTGATTGGCGACTCCGGCGTCGGCAAGTCCAATCTCCTCTCCAGAACCCTCAACGTCGACGTAGCTGGCCAATCGGTCATCAAGGCCCAGATTTGGGACACTGCTGGCCAAGAAAGTCATGATAGAAGTGATCCTGTCTGGCTGCAGATCCTTTATAACGGAGCATATGCAACTAGATCAGTCAAGGTGGATATCAGTCAAGGTGCTTCCTTACTGAAGTTCCAAGAGTCAATTGCTGAATATTCAAAAGCAAATGCAATTATAAACAGCGGCAAATTTTCTACAGCAATTGATTCATATAGACTATACAAGTTTGGAGTTTGGCGGCGTCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ras

Protein Analysis

156

Amino Acids

16.82

Weight (kDa)

9.23

Isoelectric Point (pI)

47.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 291, 398
AasI GACNNNNNNGTC 1 cut(s) 152
AccI GTMKAC 1 cut(s) 192
AciI CCGC 2 cut(s) 405, 460
AclWI GGATC 2 cut(s) 260, 277
AcoI YGGCCR 2 cut(s) 202, 241
AcsI RAATTY 1 cut(s) 410
AcuI CTGAAG 1 cut(s) 371
AcyI GRCGYC 2 cut(s) 153, 463
AfaI GTAC 1 cut(s) 126
AfiI CCNNNNNNNGG 2 cut(s) 228, 229
AgsI TTSAA 1 cut(s) 381
AjnI CCWGG 1 cut(s) 120
AluBI AGCT 3 cut(s) 60, 73, 200
AluI AGCT 3 cut(s) 60, 73, 200
Alw26I GTCTC 3 cut(s) 9, 100, 109
AlwI GGATC 2 cut(s) 260, 277
AoxI GGCC 3 cut(s) 202, 219, 241
ApeKI GCWGC 2 cut(s) 57, 277
ApoI RAATTY 1 cut(s) 410
AspS9I GGNCC 1 cut(s) 220
AsuHPI GGTGA 1 cut(s) 41
BalI TGGCCA 2 cut(s) 204, 243
BauI CACGAG 1 cut(s) 89
BbsI GAAGAC 1 cut(s) 35
BbvI GCAGC 2 cut(s) 69, 264
BciT130I CCWGG 1 cut(s) 122
BcoDI GTCTC 3 cut(s) 9, 100, 109
BfaI CTAG 2 cut(s) 309, 469
BfmI CTRYAG 3 cut(s) 55, 278, 417
BglI GCCNNNNNGGC 1 cut(s) 20
BisI GCNGC 4 cut(s) 58, 278, 406, 461
BlsI GCNGC 4 cut(s) 59, 279, 407, 462
Bme1390I CCNGG 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 220
BmrFI CCNGG 1 cut(s) 122
BpiI GAAGAC 1 cut(s) 35
BpmI CTGGAG 1 cut(s) 160
BsaHI GRCGYC 2 cut(s) 153, 463
BsaI GGTCTC 1 cut(s) 100
BsaJI CCNNGG 1 cut(s) 120
Bsc4I CCNNNNNNNGG 2 cut(s) 228, 229
BseBI CCWGG 1 cut(s) 122
BseDI CCNNGG 1 cut(s) 120
BseLI CCNNNNNNNGG 2 cut(s) 228, 229
BseMII CTCAG 1 cut(s) 83
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 2 cut(s) 69, 264
BseYI CCCAGC 1 cut(s) 112
BshFI GGCC 3 cut(s) 204, 221, 243
BsiSI CCGG 1 cut(s) 150
BslFI GGGAC 2 cut(s) 95, 245
BslI CCNNNNNNNGG 2 cut(s) 228, 229
BsmAI GTCTC 3 cut(s) 9, 100, 109
BsmBI CGTCTC 1 cut(s) 109
BsmFI GGGAC 2 cut(s) 95, 245
BsnI GGCC 3 cut(s) 204, 221, 243
Bso31I GGTCTC 1 cut(s) 100
Bsp143I GATC 3 cut(s) 265, 282, 311
BspACI CCGC 2 cut(s) 405, 460
BspANI GGCC 3 cut(s) 204, 221, 243
BspCNI CTCAG 1 cut(s) 82
BspHI TCATGA 1 cut(s) 253
BspMAI CTGCAG 2 cut(s) 59, 282
BspPI GGATC 2 cut(s) 260, 277
BspQI GCTCTTC 1 cut(s) 67
BspTNI GGTCTC 1 cut(s) 100
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 3 cut(s) 265, 282, 311
BssNI GRCGYC 2 cut(s) 153, 463
BssSI CACGAG 1 cut(s) 89
Bst2BI CACGAG 1 cut(s) 89
Bst2UI CCWGG 1 cut(s) 122
Bst6I CTCTTC 1 cut(s) 67
BstACI GRCGYC 2 cut(s) 153, 463
BstC8I GCNNGC 2 cut(s) 202, 241
BstDEI CTNAG 1 cut(s) 69
BstKTI GATC 3 cut(s) 268, 285, 314
BstMAI GTCTC 3 cut(s) 9, 100, 109
BstMBI GATC 3 cut(s) 265, 282, 311
BstMWI GCNNNNNNNGC 2 cut(s) 20, 150
BstNI CCWGG 1 cut(s) 122
BstSCI CCNGG 1 cut(s) 120
BstSFI CTRYAG 3 cut(s) 55, 278, 417
BstV1I GCAGC 2 cut(s) 69, 264
BstV2I GAAGAC 1 cut(s) 35
BstX2I RGATCY 1 cut(s) 282
BstYI RGATCY 1 cut(s) 282
BsuRI GGCC 3 cut(s) 204, 221, 243
BtsI GCAGTG 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 234
Cac8I GCNNGC 2 cut(s) 202, 241
CciI TCATGA 1 cut(s) 253
Cfr13I GGNCC 1 cut(s) 220
CseI GACGC 3 cut(s) 91, 142, 452
Csp6I GTAC 1 cut(s) 125
CviAII CATG 1 cut(s) 254
CviJI RGCY 9 cut(s) 23, 60, 73, 116, 200, 204, 221, 243, 277
CviKI_1 RGCY 9 cut(s) 23, 60, 73, 116, 200, 204, 221, 243, 277
CviQI GTAC 1 cut(s) 125
DdeI CTNAG 1 cut(s) 69
DpnI GATC 3 cut(s) 267, 284, 313
DpnII GATC 3 cut(s) 265, 282, 311
DrdI GACNNNNNNGTC 1 cut(s) 152
DseDI GACNNNNNNGTC 1 cut(s) 152
EaeI YGGCCR 2 cut(s) 202, 241
Eam1104I CTCTTC 1 cut(s) 67
EarI CTCTTC 1 cut(s) 67
Eco31I GGTCTC 1 cut(s) 100
Eco32I GATATC 1 cut(s) 328
Eco57I CTGAAG 1 cut(s) 371
EcoRII CCWGG 1 cut(s) 120
EcoRV GATATC 1 cut(s) 328
Esp3I CGTCTC 1 cut(s) 109
FaeI CATG 1 cut(s) 257
FaiI YATR 8 cut(s) 255, 291, 301, 303, 398, 433, 435, 442
FaqI GGGAC 2 cut(s) 95, 245
FatI CATG 1 cut(s) 253
FauNDI CATATG 1 cut(s) 301
FblI GTMKAC 1 cut(s) 192
Fnu4HI GCNGC 4 cut(s) 58, 278, 406, 461
Fsp4HI GCNGC 4 cut(s) 58, 278, 406, 461
FspBI CTAG 2 cut(s) 309, 469
GluI GCNGC 4 cut(s) 58, 278, 406, 461
GsaI CCCAGC 1 cut(s) 116
GsuI CTGGAG 1 cut(s) 160
HaeIII GGCC 3 cut(s) 204, 221, 243
HapII CCGG 1 cut(s) 150
HgaI GACGC 3 cut(s) 91, 142, 452
Hin1I GRCGYC 2 cut(s) 153, 463
Hin1II CATG 1 cut(s) 257
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 3 cut(s) 146, 362, 428
HpaII CCGG 1 cut(s) 150
HphI GGTGA 1 cut(s) 41
Hpy166II GTNNAC 2 cut(s) 127, 193
Hpy188III TCNNGA 2 cut(s) 177, 254
Hpy8I GTNNAC 2 cut(s) 127, 193
Hpy99I CGWCG 4 cut(s) 158, 194, 197, 468
HpyCH4IV ACGT 2 cut(s) 189, 195
HpyCH4V TGCA 4 cut(s) 57, 280, 305, 392
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 150
HpyF3I CTNAG 1 cut(s) 69
HpySE526I ACGT 2 cut(s) 189, 195
Hsp92I GRCGYC 2 cut(s) 153, 463
Hsp92II CATG 1 cut(s) 257
Kzo9I GATC 3 cut(s) 265, 282, 311
LguI GCTCTTC 1 cut(s) 67
LmnI GCTCC 1 cut(s) 296
Lsp1109I GCAGC 2 cut(s) 69, 264
MaeI CTAG 2 cut(s) 309, 469
MaeII ACGT 2 cut(s) 189, 195
MalI GATC 3 cut(s) 267, 284, 313
MboI GATC 3 cut(s) 265, 282, 311
MboII GAAGA 2 cut(s) 35, 54
MfeI CAATTG 2 cut(s) 366, 423
MflI RGATCY 1 cut(s) 282
MlsI TGGCCA 2 cut(s) 204, 243
MluCI AATT 4 cut(s) 366, 393, 410, 423
MluNI TGGCCA 2 cut(s) 204, 243
MlyI GAGTC 2 cut(s) 140, 371
MnlI CCTC 8 cut(s) 25, 57, 62, 76, 98, 127, 182, 194
Mox20I TGGCCA 2 cut(s) 204, 243
MscI TGGCCA 2 cut(s) 204, 243
Msp20I TGGCCA 2 cut(s) 204, 243
MspA1I CMGCKG 1 cut(s) 405
MspI CCGG 1 cut(s) 150
MspR9I CCNGG 1 cut(s) 122
MunI CAATTG 2 cut(s) 366, 423
MvaI CCWGG 1 cut(s) 122
MwoI GCNNNNNNNGC 2 cut(s) 20, 150
NdeI CATATG 1 cut(s) 301
NdeII GATC 3 cut(s) 265, 282, 311
NlaIII CATG 1 cut(s) 257
PagI TCATGA 1 cut(s) 253
PciSI GCTCTTC 1 cut(s) 67
PfeI GAWTC 1 cut(s) 428
PkrI GCNGC 4 cut(s) 59, 279, 407, 462
PleI GAGTC 2 cut(s) 140, 370
PpsI GAGTC 2 cut(s) 140, 370
PsiI TTATAA 2 cut(s) 291, 398
Psp6I CCWGG 1 cut(s) 120
PspFI CCCAGC 1 cut(s) 112
PspGI CCWGG 1 cut(s) 120
PspPI GGNCC 1 cut(s) 220
PstI CTGCAG 2 cut(s) 59, 282
PsuI RGATCY 1 cut(s) 282
RsaI GTAC 1 cut(s) 126
RsaNI GTAC 1 cut(s) 125
SalI GTCGAC 1 cut(s) 191
SapI GCTCTTC 1 cut(s) 67
SatI GCNGC 4 cut(s) 58, 278, 406, 461
Sau3AI GATC 3 cut(s) 265, 282, 311
Sau96I GGNCC 1 cut(s) 220
SchI GAGTC 2 cut(s) 140, 371
ScrFI CCNGG 1 cut(s) 122
SetI ASST 9 cut(s) 54, 62, 75, 126, 192, 198, 202, 324, 340
SfcI CTRYAG 3 cut(s) 55, 278, 417
SgrDI CGTCGACG 1 cut(s) 191
SmlI CTYRAG 1 cut(s) 6
SmoI CTYRAG 1 cut(s) 6
Sse9I AATT 4 cut(s) 366, 393, 410, 423
SsiI CCGC 2 cut(s) 405, 460
SspI AATATT 1 cut(s) 377
SspMI CTAG 2 cut(s) 309, 469
StyD4I CCNGG 1 cut(s) 120
TaiI ACGT 2 cut(s) 192, 198
TaqI TCGA 1 cut(s) 192
TaqII GACCGA 2 cut(s) 29, 199
TasI AATT 4 cut(s) 366, 393, 410, 423
TauI GCSGC 2 cut(s) 408, 463
TfiI GAWTC 1 cut(s) 428
TscAI CASTG 1 cut(s) 241
TseI GCWGC 2 cut(s) 57, 277
TspDTI ATGAA 1 cut(s) 420
TspGWI ACGGA 1 cut(s) 309
TspRI CASTG 1 cut(s) 241
XapI RAATTY 1 cut(s) 410
XcmI CCANNNNNNNNNTGG 1 cut(s) 137
XmiI GTMKAC 1 cut(s) 192
XspI CTAG 2 cut(s) 309, 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.