Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003069.1

Orthogroup ID

OG0017856

Physical Location & Seq

Genomic Coordinates Forward (+)

72294 .. 73216

Gene Structure 923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003069.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atgaccgaaaaaccgaaaaaccgaaaggaatcgatccggaccggacggttcgggtccggttttacactgagaattactgttttcggtccgggtgcttttgcgggtgattttgaggaagcagacgagaaggaagaggaggagggagaaggcggtggtggctgcgagtgggacgaggagatgggtgcagtggggctgcggtggctgagaatgacagggttgggtgattgggcgcatcgtgagaggaagaggaggaggagaaggaggaagaagaagaataagaagcaggaggaggaggaactgaaagcccgaatgaaccggcacgttttgtgtcggtccgggtttaggccggtccccgttctctgcaactgcaagtccggtcctggtttagctttgccggttccggtccctgtaaaagcagtgccggtctgggaccgtgcccagccatatatatatcagactcatctccaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.88

Weight (kDa)

9.65

Isoelectric Point (pI)

77.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017856)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8352595.1_g000001 Rmu_sc0001009.1_g000018 Rmu_sc0002723.1_g000002 Rmu_sc0003069.1_g000015
rosa_samantha	Rh1AG161900 Rh1CG151200 Rh1DG206000 Rh5CG268400 Rh5CG348400 Rh6AG220900 Rh6CG409500
rosa_wichuraiana	Rw6G015490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	36
AciI	CCGC	3 cut(s)	101, 150, 196
AclWI	GGATC	1 cut(s)	28
AfiI	CCNNNNNNNGG	1 cut(s)	342
AjnI	CCWGG	1 cut(s)	379
AluBI	AGCT	1 cut(s)	389
AluI	AGCT	1 cut(s)	389
AlwI	GGATC	1 cut(s)	28
Aor13HI	TCCGGA	1 cut(s)	36
AoxI	GGCC	1 cut(s)	344
ApeKI	GCWGC	2 cut(s)	159, 193
AspLEI	GCGC	1 cut(s)	232
AspS9I	GGNCC	8 cut(s)	39, 54, 86, 333, 349, 377, 403, 430
AsuC2I	CCSGG	2 cut(s)	90, 337
AsuHPI	GGTGA	2 cut(s)	116, 233
AvaII	GGWCC	8 cut(s)	39, 54, 86, 333, 349, 377, 403, 430
BaeGI	GKGCMC	1 cut(s)	439
BbvI	GCAGC	2 cut(s)	146, 180
BccI	CCATC	1 cut(s)	172
BciT130I	CCWGG	1 cut(s)	381
BcnI	CCSGG	2 cut(s)	90, 337
BisI	GCNGC	2 cut(s)	160, 194
BlsI	GCNGC	2 cut(s)	161, 195
Bme1390I	CCNGG	3 cut(s)	90, 337, 381
Bme18I	GGWCC	8 cut(s)	39, 54, 86, 333, 349, 377, 403, 430
BmgT120I	GGNCC	8 cut(s)	39, 54, 86, 333, 349, 377, 403, 430
BmiI	GGNNCC	5 cut(s)	55, 351, 399, 405, 431
BmrFI	CCNGG	3 cut(s)	90, 337, 381
BmsI	GCATC	1 cut(s)	241
BpuMI	CCSGG	2 cut(s)	90, 337
Bsa29I	ATCGAT	1 cut(s)	32
BsaWI	WCCGGW	5 cut(s)	36, 41, 56, 374, 400
Bsc4I	CCNNNNNNNGG	1 cut(s)	342
Bse118I	RCCGGY	4 cut(s)	315, 346, 394, 421
BseAI	TCCGGA	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	381
BseCI	ATCGAT	1 cut(s)	32
BseLI	CCNNNNNNNGG	1 cut(s)	342
BseMII	CTCAG	2 cut(s)	59, 194
BseRI	GAGGAG	8 cut(s)	149, 152, 188, 262, 265, 268, 302, 305
BseSI	GKGCMC	1 cut(s)	439
BseXI	GCAGC	2 cut(s)	146, 180
BseYI	CCCAGC	1 cut(s)	438
BsgI	GTGCAG	1 cut(s)	204
BshFI	GGCC	1 cut(s)	346
BshVI	ATCGAT	1 cut(s)	32
BslFI	GGGAC	4 cut(s)	182, 335, 389, 443
BslI	CCNNNNNNNGG	1 cut(s)	342
BsmFI	GGGAC	4 cut(s)	182, 335, 389, 443
BsnI	GGCC	1 cut(s)	346
Bsp1286I	GDGCHC	1 cut(s)	439
Bsp13I	TCCGGA	1 cut(s)	36
Bsp143I	GATC	1 cut(s)	33
BspACI	CCGC	3 cut(s)	101, 150, 196
BspANI	GGCC	1 cut(s)	346
BspCNI	CTCAG	2 cut(s)	60, 195
BspDI	ATCGAT	1 cut(s)	32
BspEI	TCCGGA	1 cut(s)	36
BspLI	GGNNCC	5 cut(s)	55, 351, 399, 405, 431
BspPI	GGATC	1 cut(s)	28
BsrFI	RCCGGY	4 cut(s)	315, 346, 394, 421
BssAI	RCCGGY	4 cut(s)	315, 346, 394, 421
BssMI	GATC	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	3 cut(s)	48, 79, 434
Bst6I	CTCTTC	2 cut(s)	126, 239
BstDEI	CTNAG	2 cut(s)	68, 203
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	1 cut(s)	36
BstMBI	GATC	1 cut(s)	33
BstMWI	GCNNNNNNNGC	2 cut(s)	156, 199
BstNI	CCWGG	1 cut(s)	381
BstSCI	CCNGG	3 cut(s)	88, 335, 379
BstSLI	GKGCMC	1 cut(s)	439
BstV1I	GCAGC	2 cut(s)	146, 180
Bsu15I	ATCGAT	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	346
BsuTUI	ATCGAT	1 cut(s)	32
BtsI	GCAGTG	2 cut(s)	192, 423
BtsIMutI	CAGTG	3 cut(s)	65, 192, 423
CfoI	GCGC	1 cut(s)	232
Cfr10I	RCCGGY	4 cut(s)	315, 346, 394, 421
Cfr13I	GGNCC	8 cut(s)	39, 54, 86, 333, 349, 377, 403, 430
ClaI	ATCGAT	1 cut(s)	32
CpoI	CGGWCCG	3 cut(s)	39, 86, 333
CspI	CGGWCCG	3 cut(s)	39, 86, 333
CviJI	RGCY	7 cut(s)	159, 193, 202, 305, 346, 389, 442
CviKI_1	RGCY	7 cut(s)	159, 193, 202, 305, 346, 389, 442
DdeI	CTNAG	2 cut(s)	68, 203
DpnI	GATC	1 cut(s)	35
DpnII	GATC	1 cut(s)	33
Eam1104I	CTCTTC	2 cut(s)	126, 239
EarI	CTCTTC	2 cut(s)	126, 239
Eco47I	GGWCC	8 cut(s)	39, 54, 86, 333, 349, 377, 403, 430
EcoRII	CCWGG	1 cut(s)	379
FaiI	YATR	4 cut(s)	445, 447, 449, 451
FaqI	GGGAC	4 cut(s)	182, 335, 389, 443
FauI	CCCGC	1 cut(s)	94
Fnu4HI	GCNGC	2 cut(s)	160, 194
Fsp4HI	GCNGC	2 cut(s)	160, 194
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	2 cut(s)	160, 194
GsaI	CCCAGC	1 cut(s)	442
HaeIII	GGCC	1 cut(s)	346
HhaI	GCGC	1 cut(s)	232
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HinfI	GANTC	2 cut(s)	29, 457
HphI	GGTGA	2 cut(s)	116, 233
Hpy188I	TCNGA	1 cut(s)	456
Hpy188III	TCNNGA	2 cut(s)	37, 236
HpyAV	CCTTC	3 cut(s)	121, 140, 252
HpyCH4III	ACNGT	3 cut(s)	48, 79, 434
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	3 cut(s)	185, 363, 369
HpyF10VI	GCNNNNNNNGC	2 cut(s)	156, 199
HpyF3I	CTNAG	2 cut(s)	68, 203
HpySE526I	ACGT	1 cut(s)	321
HspAI	GCGC	1 cut(s)	230
Kpn2I	TCCGGA	1 cut(s)	36
Kzo9I	GATC	1 cut(s)	33
Lsp1109I	GCAGC	2 cut(s)	146, 180
LweI	GCATC	1 cut(s)	241
MaeII	ACGT	1 cut(s)	321
MalI	GATC	1 cut(s)	35
MboI	GATC	1 cut(s)	33
MboII	GAAGA	5 cut(s)	143, 256, 277, 280, 283
MhlI	GDGCHC	1 cut(s)	439
MluCI	AATT	1 cut(s)	72
MlyI	GAGTC	1 cut(s)	451
MroI	TCCGGA	1 cut(s)	36
MspR9I	CCNGG	3 cut(s)	90, 337, 381
MvaI	CCWGG	1 cut(s)	381
MwoI	GCNNNNNNNGC	2 cut(s)	156, 199
NciI	CCSGG	2 cut(s)	90, 337
NdeII	GATC	1 cut(s)	33
NlaIV	GGNNCC	5 cut(s)	55, 351, 399, 405, 431
PfeI	GAWTC	1 cut(s)	29
PkrI	GCNGC	2 cut(s)	161, 195
PleI	GAGTC	1 cut(s)	451
PpsI	GAGTC	1 cut(s)	451
Psp6I	CCWGG	1 cut(s)	379
PspFI	CCCAGC	1 cut(s)	438
PspGI	CCWGG	1 cut(s)	379
PspN4I	GGNNCC	5 cut(s)	55, 351, 399, 405, 431
PspPI	GGNCC	8 cut(s)	39, 54, 86, 333, 349, 377, 403, 430
Rsr2I	CGGWCCG	3 cut(s)	39, 86, 333
RsrII	CGGWCCG	3 cut(s)	39, 86, 333
SatI	GCNGC	2 cut(s)	160, 194
Sau3AI	GATC	1 cut(s)	33
Sau96I	GGNCC	8 cut(s)	39, 54, 86, 333, 349, 377, 403, 430
SchI	GAGTC	1 cut(s)	451
ScrFI	CCNGG	3 cut(s)	90, 337, 381
SduI	GDGCHC	1 cut(s)	439
SetI	ASST	2 cut(s)	324, 391
SfaNI	GCATC	1 cut(s)	241
SinI	GGWCC	8 cut(s)	39, 54, 86, 333, 349, 377, 403, 430
Sse9I	AATT	1 cut(s)	72
SsiI	CCGC	3 cut(s)	101, 150, 196
StyD4I	CCNGG	3 cut(s)	88, 335, 379
TaaI	ACNGT	3 cut(s)	48, 79, 434
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	1 cut(s)	32
TaqII	GACCGA	3 cut(s)	20, 74, 321
TasI	AATT	1 cut(s)	72
TfiI	GAWTC	1 cut(s)	29
TscAI	CASTG	3 cut(s)	72, 192, 423
TseI	GCWGC	2 cut(s)	159, 193
TspDTI	ATGAA	1 cut(s)	326
TspRI	CASTG	3 cut(s)	72, 192, 423
VpaK11BI	GGWCC	8 cut(s)	39, 54, 86, 333, 349, 377, 403, 430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.