Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8376727.1

Orthogroup ID

OG0005094

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 710

Gene Structure 710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8376727.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ccaccagaacaagcctggaggaggaagttaaacagcaatgctaatcttcttaaagaatttagtattacatttagggaagcaataaagatggttaggttaggtgtacgcttgtggtcatatgtcagacaagaggcttctcatggaaggaaagcacctattgatcctttcacacgaggtatttgcaagccatctgcatctcaaggggttccgctcggagggatgggaagtggcagcatctcaagaggttttagaggcgagttcaggcaatggcaaatcattccgggtgtatgtgatggttctcctgtcatggccaatcaattctctgtaaaattctactctttatctgttatcgatctgttgatattattcgttatcttctattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0006082 GO:0006629 GO:0007275 GO:0007399 GO:0007417 GO:0008150 GO:0008152 GO:0008202 GO:0008206 GO:0008422 GO:0009056 GO:0009987 GO:0015926 GO:0016020 GO:0016021 GO:0016137 GO:0016139 GO:0016787 GO:0016798 GO:0019752 GO:0021953 GO:0021954 GO:0022008 GO:0030154 GO:0030182 GO:0031224 GO:0032501 GO:0032502 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044425 GO:0048468 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0071704 GO:1901135 GO:1901136 GO:1901360 GO:1901575 GO:1901615 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00511 ko00600 ko01100 map00511 map00600 map01100

Pfam Domains

Protein Families

DUF608 Glyco_hydr_116N

Protein Analysis

127

Amino Acids

14.28

Weight (kDa)

10.28

Isoelectric Point (pI)

44.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24180 AT3G24180
fragaria_vesca	FvH4_4g00440 FvH4_4g00440 FvH4_4g00440 FvH4_4g00440 FvH4_4g00440
malus_domestica	MD04G1004800.v1.1
prunus_persica	Prupe.1G004700_v2.0.a1 Prupe.1G004700_v2.0.a1 Prupe.1G004700_v2.0.a1
pyrus_communis	pycom04g00480
rosa_chinensis	RchiOBHm_Chr4g0385861
rosa_laevigata	RLG00000010208
rosa_multiflora	Rmu_co8376727.1_g000001 Rmu_co8521537.1_g000001 Rmu_sc0004773.1_g000004 Rmu_sc0008728.1_g000010
rosa_roxburghii	Rroxscaffold_5G00333460
rosa_rugosa	Rorug01G0169800 Rorug03G0301400 Rorug03G0301500 Rorug03G0301600 Rorug03G0301700 Rorug05G0362900
rosa_samantha	Rh4AG006800 Rh4BG004300 Rh4CG007300 Rh4DG006300
rosa_wichuraiana	Rw4G000370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	211
AciI	CCGC	1 cut(s)	209
AclWI	GGATC	1 cut(s)	155
AcoI	YGGCCR	1 cut(s)	309
AcsI	RAATTY	2 cut(s)	56, 329
AfaI	GTAC	1 cut(s)	105
AfiI	CCNNNNNNNGG	2 cut(s)	21, 215
AjnI	CCWGG	1 cut(s)	14
AlwI	GGATC	1 cut(s)	155
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	1 cut(s)	231
ApoI	RAATTY	2 cut(s)	56, 329
AsuC2I	CCSGG	1 cut(s)	282
BalI	TGGCCA	1 cut(s)	311
BauI	CACGAG	1 cut(s)	171
BbvI	GCAGC	1 cut(s)	243
BccI	CCATC	4 cut(s)	82, 196, 214, 287
BcgI	CGANNNNNNTGC	2 cut(s)	162, 196
BciT130I	CCWGG	1 cut(s)	16
BcnI	CCSGG	1 cut(s)	282
BisI	GCNGC	1 cut(s)	232
BlsI	GCNGC	1 cut(s)	233
Bme1390I	CCNGG	2 cut(s)	16, 282
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	2 cut(s)	16, 282
BmsI	GCATC	2 cut(s)	203, 243
BpmI	CTGGAG	1 cut(s)	37
BpuEI	CTTGAG	2 cut(s)	183, 223
BpuMI	CCSGG	1 cut(s)	282
Bsa29I	ATCGAT	1 cut(s)	351
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 215
Bse3DI	GCAATG	2 cut(s)	43, 272
BseBI	CCWGG	1 cut(s)	16
BseCI	ATCGAT	1 cut(s)	351
BseGI	GGATG	1 cut(s)	225
BseLI	CCNNNNNNNGG	2 cut(s)	21, 215
BseMI	GCAATG	2 cut(s)	43, 272
BseRI	GAGGAG	1 cut(s)	34
BseXI	GCAGC	1 cut(s)	243
BshFI	GGCC	1 cut(s)	311
BshVI	ATCGAT	1 cut(s)	351
BsiSI	CCGG	1 cut(s)	281
BslI	CCNNNNNNNGG	2 cut(s)	21, 215
BsnI	GGCC	1 cut(s)	311
Bsp143I	GATC	2 cut(s)	160, 352
BspACI	CCGC	1 cut(s)	209
BspANI	GGCC	1 cut(s)	311
BspDI	ATCGAT	1 cut(s)	351
BspLI	GGNNCC	1 cut(s)	207
BspPI	GGATC	1 cut(s)	155
BsrBI	CCGCTC	1 cut(s)	211
BsrDI	GCAATG	2 cut(s)	43, 272
BssMI	GATC	2 cut(s)	160, 352
BssSI	CACGAG	1 cut(s)	171
Bst2BI	CACGAG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	16
BstC8I	GCNNGC	1 cut(s)	185
BstENI	CCTNNNNNAGG	1 cut(s)	19
BstF5I	GGATG	1 cut(s)	225
BstKTI	GATC	2 cut(s)	163, 355
BstMBI	GATC	2 cut(s)	160, 352
BstNI	CCWGG	1 cut(s)	16
BstSCI	CCNGG	2 cut(s)	14, 280
BstV1I	GCAGC	1 cut(s)	243
Bsu15I	ATCGAT	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	311
BsuTUI	ATCGAT	1 cut(s)	351
BtsCI	GGATG	1 cut(s)	225
Cac8I	GCNNGC	1 cut(s)	185
ClaI	ATCGAT	1 cut(s)	351
Csp6I	GTAC	1 cut(s)	104
CviAII	CATG	2 cut(s)	140, 307
CviJI	RGCY	4 cut(s)	14, 134, 187, 311
CviKI_1	RGCY	4 cut(s)	14, 134, 187, 311
CviQI	GTAC	1 cut(s)	104
DpnI	GATC	2 cut(s)	162, 354
DpnII	GATC	2 cut(s)	160, 352
EaeI	YGGCCR	1 cut(s)	309
EcoNI	CCTNNNNNAGG	1 cut(s)	19
EcoRII	CCWGG	1 cut(s)	14
FaeI	CATG	2 cut(s)	143, 310
FaiI	YATR	5 cut(s)	118, 120, 141, 289, 308
FatI	CATG	2 cut(s)	139, 306
FauNDI	CATATG	1 cut(s)	118
Fnu4HI	GCNGC	1 cut(s)	232
FokI	GGATG	1 cut(s)	232
Fsp4HI	GCNGC	1 cut(s)	232
GluI	GCNGC	1 cut(s)	232
GsuI	CTGGAG	1 cut(s)	37
HaeIII	GGCC	1 cut(s)	311
HapII	CCGG	1 cut(s)	281
Hin1II	CATG	2 cut(s)	143, 310
HpaII	CCGG	1 cut(s)	281
Hpy166II	GTNNAC	1 cut(s)	104
Hpy188I	TCNGA	2 cut(s)	125, 215
Hpy188III	TCNNGA	1 cut(s)	240
Hpy8I	GTNNAC	1 cut(s)	104
HpyAV	CCTTC	1 cut(s)	138
HpyCH4V	TGCA	2 cut(s)	183, 194
Hsp92II	CATG	2 cut(s)	143, 310
Kzo9I	GATC	2 cut(s)	160, 352
LpnPI	CCDG	5 cut(s)	18, 28, 247, 294, 315
Lsp1109I	GCAGC	1 cut(s)	243
LweI	GCATC	2 cut(s)	203, 243
MalI	GATC	2 cut(s)	162, 354
MbiI	CCGCTC	1 cut(s)	211
MboI	GATC	2 cut(s)	160, 352
MboII	GAAGA	2 cut(s)	38, 367
MlsI	TGGCCA	1 cut(s)	311
MluCI	AATT	3 cut(s)	56, 317, 329
MluNI	TGGCCA	1 cut(s)	311
MnlI	CCTC	7 cut(s)	12, 15, 124, 167, 209, 236, 245
Mox20I	TGGCCA	1 cut(s)	311
MscI	TGGCCA	1 cut(s)	311
MseI	TTAA	2 cut(s)	29, 51
Msp20I	TGGCCA	1 cut(s)	311
MspI	CCGG	1 cut(s)	281
MspR9I	CCNGG	2 cut(s)	16, 282
MvaI	CCWGG	1 cut(s)	16
NciI	CCSGG	1 cut(s)	282
NdeI	CATATG	1 cut(s)	118
NdeII	GATC	2 cut(s)	160, 352
NlaIII	CATG	2 cut(s)	143, 310
NlaIV	GGNNCC	1 cut(s)	207
PkrI	GCNGC	1 cut(s)	233
Psp6I	CCWGG	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	14
PspN4I	GGNNCC	1 cut(s)	207
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
SaqAI	TTAA	2 cut(s)	29, 51
SatI	GCNGC	1 cut(s)	232
Sau3AI	GATC	2 cut(s)	160, 352
ScrFI	CCNGG	2 cut(s)	16, 282
SetI	ASST	5 cut(s)	98, 103, 157, 178, 247
SfaNI	GCATC	2 cut(s)	203, 243
SmlI	CTYRAG	2 cut(s)	198, 238
SmoI	CTYRAG	2 cut(s)	198, 238
Sse9I	AATT	3 cut(s)	56, 317, 329
SsiI	CCGC	1 cut(s)	209
StyD4I	CCNGG	2 cut(s)	14, 280
TaqI	TCGA	1 cut(s)	351
TasI	AATT	3 cut(s)	56, 317, 329
Tru1I	TTAA	2 cut(s)	29, 51
Tru9I	TTAA	2 cut(s)	29, 51
TseI	GCWGC	1 cut(s)	231
XagI	CCTNNNNNAGG	1 cut(s)	19
XapI	RAATTY	2 cut(s)	56, 329
XcmI	CCANNNNNNNNNTGG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.